Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

45525437 .. 45526162

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG406600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAGACGCGCCGATGATTCAACCACCTACCACCTCCTCTAATCGCCCTGCACTGCCATCATCAACTTTGCAGATTTGGCGCACCGATCCAAGCCGGACCGCTCATCATGATCTCTGCCATCTTTCTACTGCTCATCCATGGCGCCAATTCCTTCTTCTTCCCCGGAGTCGCTCCCGAGGACCTCATCAAGCCCATGTCCCATATGACCACGTAGTCGAAGTCCTCGAAAACGCTGTCATTGGCCACCTGAACGTCCTTGAATCCCTCCGCCACTTCACCAACCGTGACCTCACCCTTCGCAAGCTTTTCGTCCGCAGCCTCGGCCCTGACACCACCACCGATTCACTCCACTTAATCTTCTTTGCCTTCGGCGACCTCGACGAGGCAATCGTCATCTTCGACAAGGCCACCAGAAAATCCAAAAGCCATGGATTCGTCACCTTCAAGCACTCCTATGAAGCCCTCATTGACTCCTCCGCCGCCACGCCTCTCCAGGATGTCAAGCTCCTCGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

173

Amino Acids

19.52

Weight (kDa)

7.23

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	103 - 155	2.2e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	11
AciI	CCGC	5 cut(s)	102, 271, 316, 480, 483
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	23, 263, 448
AjnI	CCWGG	1 cut(s)	495
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	2 cut(s)	307, 508
AluI	AGCT	2 cut(s)	307, 508
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	3 cut(s)	244, 325, 408
ApeKI	GCWGC	1 cut(s)	318
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	3 cut(s)	13, 84, 147
AspS9I	GGNCC	3 cut(s)	99, 182, 326
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	271, 286, 433
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	99, 182
BalI	TGGCCA	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	2 cut(s)	67, 129
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	497
BcnI	CCSGG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	2 cut(s)	319, 483
BlsI	GCNGC	2 cut(s)	320, 484
Bme1390I	CCNGG	2 cut(s)	166, 497
Bme18I	GGWCC	2 cut(s)	99, 182
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	3 cut(s)	99, 182, 326
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	166, 497
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	5 cut(s)	140, 164, 178, 322, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	5 cut(s)	140, 164, 178, 322, 430
BseGI	GGATG	2 cut(s)	136, 505
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseRI	GAGGAG	3 cut(s)	28, 466, 500
BseXI	GCAGC	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	246, 327, 410
BshNI	GGYRCC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	97, 166
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	246, 327, 410
BsoBI	CYCGRG	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	88, 112
Bsp19I	CCATGG	2 cut(s)	140, 430
BspACI	CCGC	5 cut(s)	102, 271, 316, 480, 483
BspANI	GGCC	3 cut(s)	246, 327, 410
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	104
BssECI	CCNNGG	5 cut(s)	140, 164, 178, 322, 430
BssMI	GATC	2 cut(s)	88, 112
BssNI	GRCGYC	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	140, 430
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	305
BstDSI	CCRYGG	2 cut(s)	140, 430
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	136, 505
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	3 cut(s)	13, 84, 147
BstKTI	GATC	2 cut(s)	91, 115
BstMBI	GATC	2 cut(s)	88, 112
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 324
BstNI	CCWGG	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	164, 495
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	246, 327, 410
BtgI	CCRYGG	2 cut(s)	140, 430
BtsCI	GGATG	2 cut(s)	136, 505
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	3 cut(s)	13, 84, 147
Cfr13I	GGNCC	3 cut(s)	99, 182, 326
CpoI	CGGWCCG	1 cut(s)	99
CseI	GACGC	1 cut(s)	17
CspI	CGGWCCG	1 cut(s)	99
CviAII	CATG	4 cut(s)	110, 141, 197, 431
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	2 cut(s)	90, 114
DpnII	GATC	2 cut(s)	88, 112
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	244
EciI	GGCGGA	2 cut(s)	260, 469
Eco130I	CCWWGG	2 cut(s)	140, 430
Eco47I	GGWCC	2 cut(s)	99, 182
Eco88I	CYCGRG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	140, 430
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
ErhI	CCWWGG	2 cut(s)	140, 430
FaeI	CATG	4 cut(s)	113, 144, 200, 434
FaiI	YATR	7 cut(s)	111, 142, 198, 205, 207, 432, 459
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	4 cut(s)	109, 140, 196, 430
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	319, 483
FokI	GGATG	2 cut(s)	123, 512
Fsp4HI	GCNGC	2 cut(s)	319, 483
GlaI	GCGC	3 cut(s)	12, 83, 146
GluI	GCNGC	2 cut(s)	319, 483
GsuI	CTGGAG	1 cut(s)	479
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	246, 327, 410
HapII	CCGG	2 cut(s)	97, 166
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	3 cut(s)	13, 84, 147
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	4 cut(s)	113, 144, 200, 434
Hin6I	GCGC	3 cut(s)	11, 82, 145
HinP1I	GCGC	3 cut(s)	11, 82, 145
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	6 cut(s)	19, 169, 263, 344, 435, 473
HpaII	CCGG	2 cut(s)	97, 166
HphI	GGTGA	3 cut(s)	271, 286, 433
Hpy188III	TCNNGA	2 cut(s)	110, 177
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	4 cut(s)	164, 308, 379, 454
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	213, 255
HpyCH4V	TGCA	2 cut(s)	53, 73
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 324
HpySE526I	ACGT	2 cut(s)	213, 255
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	113, 144, 200, 434
HspAI	GCGC	3 cut(s)	11, 82, 145
KasI	GGCGCC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	88, 112
LmnI	GCTCC	2 cut(s)	179, 513
LpnPI	CCDG	8 cut(s)	63, 110, 179, 263, 342, 427, 482, 509
Lsp1109I	GCAGC	1 cut(s)	330
MaeII	ACGT	2 cut(s)	213, 255
MaeIII	GTNAC	2 cut(s)	287, 439
MalI	GATC	2 cut(s)	90, 114
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	2 cut(s)	88, 112
MboII	GAAGA	5 cut(s)	17, 149, 152, 352, 391
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	246
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	178, 467
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	456
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	2 cut(s)	97, 166
MspR9I	CCNGG	2 cut(s)	166, 497
MvaI	CCWGG	1 cut(s)	497
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	79, 324
NarI	GGCGCC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	2 cut(s)	140, 430
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	2 cut(s)	88, 112
NlaIII	CATG	4 cut(s)	113, 144, 200, 434
NlaIV	GGNNCC	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	287, 439
PagI	TCATGA	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	4 cut(s)	225, 378, 390, 399
PfeI	GAWTC	4 cut(s)	19, 263, 344, 435
PfoI	TCCNGGA	1 cut(s)	495
PkrI	GCNGC	2 cut(s)	320, 484
PleI	GAGTC	2 cut(s)	177, 467
PluTI	GGCGCC	1 cut(s)	148
PpsI	GAGTC	2 cut(s)	177, 467
Ppu21I	YACGTR	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	3 cut(s)	99, 182, 326
PspPPI	RGGWCCY	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	456
Rsr2I	CGGWCCG	1 cut(s)	99
RsrII	CGGWCCG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	319, 483
Sau3AI	GATC	2 cut(s)	88, 112
Sau96I	GGNCC	3 cut(s)	99, 182, 326
SchI	GAGTC	2 cut(s)	178, 467
ScrFI	CCNGG	2 cut(s)	166, 497
SfoI	GGCGCC	1 cut(s)	146
SinI	GGWCC	2 cut(s)	99, 182
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	5 cut(s)	102, 271, 316, 480, 483
SspDI	GGCGCC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	164, 495
StyI	CCWWGG	2 cut(s)	140, 430
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	216, 258
TaqI	TCGA	4 cut(s)	219, 228, 381, 402
TasI	AATT	1 cut(s)	149
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	4 cut(s)	19, 263, 344, 435
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	2 cut(s)	287, 439
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	2 cut(s)	287, 439
TspDTI	ATGAA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	2 cut(s)	99, 182
XagI	CCTNNNNNAGG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.