Rh3DG316100

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000611
Physical Location & Seq
Forward (+)
33997786 .. 33998830
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG316100.1

Sequence Viewer

Length: 963 bp
ATGTTAAAGGAGGAGGGTTTTCTGGTAACTTGGGGAGGGAAAATATCTCCGGTCCCAGCTTCCTATAGAAGTTGCCTCACAAAGATCTGCCTTGAGCGATATGACGAGTTGGACGAGTTGAAAGCACGCCTGCAAAGAATCGTTCCGGCAATCCTGATAGTGTTTCTTTCCAATTGGTTGGGTTTTGATGTGAGGAAGCAGAACATGAATTTGGGTAATTGGTTATCCATGGACTTCCCAAAGAAGCGGAAGACGGACGAGAACGGCGACGTTTCGGCTGCCCCGCCTTCCCAATTAACAACCCTAACCCCCGACGACTTCCGCAAACTCCTCCAGCCCATGTCCCACGACCACCTCGTCGAAATCCTCGAAAACGCCGTCGTTCGCCACCCCGACGTCCTCGAATCCCTCCTCCACGTCACCAACCGTGACCTCACCCTCCGCAAGCTCTTCGTCCGTGGCCTCGGCGGCGACACCACCACCGATTCGCTCCGCTCCGTCTTCTCCGCCTTCGGCGACCTCGACGAGGCGATCGTCATCTTTGACAAGGCCACCGGAAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTAATTGCGCTCAAGGAACCGAGCAAGAAGATCGACGGCAGAGTCACCGTCACGCAGTACGCCGCCGCCGGACATTCGGCGCCGTTCAGTAGCAGCAACGGCGGCGCCGATGTCTCGGCGAGGAAGATTTACGTCGGGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGTCCTCTAGGGTTTGATAAGGCCACCGGAAAATCAAAGGGCTTTGCATTCTTCGTGTACAAGTCTGAAGAAGGTGCCAGGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGGTCATCATGTGACTTGGCAAATTAGCTGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

320

Amino Acids

35.24

Weight (kDa)

6.46

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 150 - 217 8.7e-15 RNA recognition motif
RRM_7 PF16367 243 - 302 2.1e-06 RNA recognition motif
RRM_1 PF00076 245 - 302 1.1e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 356, 647
AatII GACGTC 1 cut(s) 399
AccB1I GGYRCC 4 cut(s) 685, 710, 748, 887
AccBSI CCGCTC 2 cut(s) 495, 899
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 900
AcyI GRCGYC 3 cut(s) 396, 686, 711
AfaI GTAC 2 cut(s) 665, 872
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 4 cut(s) 121, 589, 809, 916
AjiI CACGTC 1 cut(s) 418
AjnI CCWGG 1 cut(s) 890
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 3 cut(s) 59, 448, 954
AluI AGCT 3 cut(s) 59, 448, 954
Alw26I GTCTC 1 cut(s) 724
AoxI GGCC 4 cut(s) 460, 549, 834, 894
ApeKI GCWGC 2 cut(s) 278, 699
ApoI RAATTY 1 cut(s) 208
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
AspLEI GCGC 3 cut(s) 616, 688, 713
AspS9I GGNCC 3 cut(s) 52, 815, 894
AsuHPI GGTGA 4 cut(s) 412, 427, 574, 643
AvaII GGWCC 2 cut(s) 52, 815
BanI GGYRCC 4 cut(s) 685, 710, 748, 887
BbsI GAAGAC 2 cut(s) 257, 493
BbvI GCAGC 2 cut(s) 265, 711
BccI CCATC 1 cut(s) 920
BceAI ACGGC 6 cut(s) 280, 362, 658, 673, 721, 736
BcgI CGANNNNNNTGC 4 cut(s) 433, 467, 619, 653
BciT130I CCWGG 1 cut(s) 892
BcoDI GTCTC 1 cut(s) 724
BfaI CTAG 1 cut(s) 821
BfmI CTRYAG 1 cut(s) 64
BfoI RGCGCY 2 cut(s) 689, 714
BglI GCCNNNNNGGC 1 cut(s) 468
BglII AGATCT 1 cut(s) 84
BisI GCNGC 7 cut(s) 279, 469, 669, 672, 700, 709, 897
BlsI GCNGC 7 cut(s) 280, 470, 670, 673, 701, 710, 898
Bme1390I CCNGG 1 cut(s) 892
Bme18I GGWCC 2 cut(s) 52, 815
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 3 cut(s) 52, 815, 894
BmiI GGNNCC 6 cut(s) 54, 624, 687, 712, 750, 889
BmrFI CCNGG 1 cut(s) 892
BpiI GAAGAC 2 cut(s) 257, 493
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 113, 602
BsaBI GATNNNNATC 2 cut(s) 536, 930
BsaHI GRCGYC 3 cut(s) 396, 686, 711
BsaJI CCNNGG 6 cut(s) 228, 457, 463, 564, 765, 891
BsaWI WCCGGW 3 cut(s) 49, 554, 839
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse8I GATNNNNATC 2 cut(s) 536, 930
BseBI CCWGG 1 cut(s) 892
BseDI CCNNGG 6 cut(s) 228, 457, 463, 564, 765, 891
BseJI GATNNNNATC 2 cut(s) 536, 930
BseLI CCNNNNNNNGG 1 cut(s) 526
BseRI GAGGAG 4 cut(s) 26, 320, 401, 754
BseXI GCAGC 2 cut(s) 265, 711
BseYI CCCAGC 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 4 cut(s) 462, 551, 836, 896
BshNI GGYRCC 4 cut(s) 685, 710, 748, 887
BsiEI CGRYCG 1 cut(s) 534
BsiSI CCGG 5 cut(s) 50, 146, 555, 675, 840
BslFI GGGAC 3 cut(s) 38, 328, 757
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 724
BsmFI GGGAC 3 cut(s) 38, 328, 757
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 4 cut(s) 462, 551, 836, 896
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 3 cut(s) 84, 531, 636
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 4 cut(s) 462, 551, 836, 896
BspLI GGNNCC 6 cut(s) 54, 624, 687, 712, 750, 889
BspQI GCTCTTC 1 cut(s) 455
BspT107I GGYRCC 4 cut(s) 685, 710, 748, 887
BsrBI CCGCTC 2 cut(s) 495, 899
BsrGI TGTACA 1 cut(s) 870
BssECI CCNNGG 6 cut(s) 228, 457, 463, 564, 765, 891
BssMI GATC 3 cut(s) 84, 531, 636
BssNI GRCGYC 3 cut(s) 396, 686, 711
BssT1I CCWWGG 2 cut(s) 228, 564
Bst2UI CCWGG 1 cut(s) 892
Bst4CI ACNGT 3 cut(s) 428, 655, 748
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 3 cut(s) 396, 686, 711
BstAUI TGTACA 1 cut(s) 870
BstC8I GCNNGC 4 cut(s) 127, 131, 446, 594
BstDSI CCRYGG 2 cut(s) 228, 457
BstENI CCTNNNNNAGG 1 cut(s) 524
BstH2I RGCGCY 2 cut(s) 689, 714
BstHHI GCGC 3 cut(s) 616, 688, 713
BstKTI GATC 3 cut(s) 87, 534, 639
BstMAI GTCTC 1 cut(s) 724
BstMBI GATC 3 cut(s) 84, 531, 636
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 7 cut(s) 468, 602, 611, 705, 708, 791, 896
BstNI CCWGG 1 cut(s) 892
BstSCI CCNGG 1 cut(s) 890
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 265, 711
BstV2I GAAGAC 2 cut(s) 257, 493
BstX2I RGATCY 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 4 cut(s) 462, 551, 836, 896
BtgI CCRYGG 2 cut(s) 228, 457
BtrI CACGTC 1 cut(s) 418
Cac8I GCNNGC 4 cut(s) 127, 131, 446, 594
CfoI GCGC 3 cut(s) 616, 688, 713
Cfr13I GGNCC 3 cut(s) 52, 815, 894
Csp6I GTAC 2 cut(s) 664, 871
CviAII CATG 4 cut(s) 205, 229, 340, 935
CviQI GTAC 2 cut(s) 664, 871
DinI GGCGCC 2 cut(s) 687, 712
DpnI GATC 3 cut(s) 86, 533, 638
DpnII GATC 3 cut(s) 84, 531, 636
DrdI GACNNNNNNGTC 2 cut(s) 356, 647
DseDI GACNNNNNNGTC 2 cut(s) 356, 647
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
EciI GGCGGA 1 cut(s) 496
Eco130I CCWWGG 2 cut(s) 228, 564
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 2 cut(s) 52, 815
Eco57I CTGAAG 1 cut(s) 900
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 815
EcoRII CCWGG 1 cut(s) 890
EcoRV GATATC 1 cut(s) 760
EcoT14I CCWWGG 2 cut(s) 228, 564
EgeI GGCGCC 2 cut(s) 687, 712
EheI GGCGCC 2 cut(s) 687, 712
ErhI CCWWGG 2 cut(s) 228, 564
FaeI CATG 4 cut(s) 208, 232, 343, 938
FaiI YATR 6 cut(s) 66, 102, 206, 230, 341, 936
FaqI GGGAC 3 cut(s) 38, 328, 757
FatI CATG 4 cut(s) 204, 228, 339, 934
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 7 cut(s) 279, 469, 669, 672, 700, 709, 897
Fsp4HI GCNGC 7 cut(s) 279, 469, 669, 672, 700, 709, 897
FspBI CTAG 1 cut(s) 821
GlaI GCGC 3 cut(s) 615, 687, 712
GluI GCNGC 7 cut(s) 279, 469, 669, 672, 700, 709, 897
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 2 cut(s) 689, 714
HaeIII GGCC 4 cut(s) 462, 551, 836, 896
HapII CCGG 5 cut(s) 50, 146, 555, 675, 840
HhaI GCGC 3 cut(s) 616, 688, 713
Hin1I GRCGYC 3 cut(s) 396, 686, 711
Hin1II CATG 4 cut(s) 208, 232, 343, 938
Hin6I GCGC 3 cut(s) 614, 686, 711
HinP1I GCGC 3 cut(s) 614, 686, 711
HinfI GANTC 5 cut(s) 138, 404, 485, 576, 648
HpaII CCGG 5 cut(s) 50, 146, 555, 675, 840
HphI GGTGA 4 cut(s) 412, 427, 574, 643
Hpy166II GTNNAC 1 cut(s) 871
Hpy188I TCNGA 3 cut(s) 769, 800, 880
Hpy188III TCNNGA 2 cut(s) 154, 742
Hpy8I GTNNAC 1 cut(s) 871
Hpy99I CGWCG 9 cut(s) 272, 317, 362, 383, 398, 527, 602, 644, 743
HpyAV CCTTC 5 cut(s) 297, 520, 595, 806, 878
HpyCH4III ACNGT 3 cut(s) 428, 655, 748
HpyCH4IV ACGT 4 cut(s) 270, 396, 417, 738
HpyCH4V TGCA 2 cut(s) 133, 860
HpyF10VI GCNNNNNNNGC 7 cut(s) 468, 602, 611, 705, 708, 791, 896
HpySE526I ACGT 4 cut(s) 270, 396, 417, 738
Hsp92I GRCGYC 3 cut(s) 396, 686, 711
Hsp92II CATG 4 cut(s) 208, 232, 343, 938
HspAI GCGC 3 cut(s) 614, 686, 711
KasI GGCGCC 2 cut(s) 685, 710
Kzo9I GATC 3 cut(s) 84, 531, 636
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 2 cut(s) 495, 500
Lsp1109I GCAGC 2 cut(s) 265, 711
MaeI CTAG 1 cut(s) 821
MaeII ACGT 4 cut(s) 270, 396, 417, 738
MaeIII GTNAC 7 cut(s) 25, 418, 428, 580, 649, 655, 937
MalI GATC 3 cut(s) 86, 533, 638
MbiI CCGCTC 2 cut(s) 495, 899
MboI GATC 3 cut(s) 84, 531, 636
MboII GAAGA 8 cut(s) 262, 442, 493, 646, 742, 821, 856, 893
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 1 cut(s) 84
MluCI AATT 6 cut(s) 172, 208, 217, 293, 609, 948
Mly113I GGCGCC 2 cut(s) 686, 711
MlyI GAGTC 1 cut(s) 657
MmeI TCCRAC 1 cut(s) 90
MseI TTAA 2 cut(s) 5, 296
MspI CCGG 5 cut(s) 50, 146, 555, 675, 840
MspR9I CCNGG 1 cut(s) 892
MunI CAATTG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 1 cut(s) 892
MwoI GCNNNNNNNGC 7 cut(s) 468, 602, 611, 705, 708, 791, 896
NarI GGCGCC 2 cut(s) 686, 711
NcoI CCATGG 1 cut(s) 228
NdeII GATC 3 cut(s) 84, 531, 636
NlaIII CATG 4 cut(s) 208, 232, 343, 938
NlaIV GGNNCC 6 cut(s) 54, 624, 687, 712, 750, 889
NmeAIII GCCGAG 2 cut(s) 444, 701
NmuCI GTSAC 6 cut(s) 418, 428, 580, 649, 655, 937
PciSI GCTCTTC 1 cut(s) 455
PcsI WCGNNNNNNNCGW 8 cut(s) 111, 264, 354, 366, 375, 519, 531, 711
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 4 cut(s) 138, 404, 485, 576
PkrI GCNGC 7 cut(s) 280, 470, 670, 673, 701, 710, 898
Ple19I CGATCG 1 cut(s) 534
PleI GAGTC 1 cut(s) 656
PluTI GGCGCC 2 cut(s) 689, 714
PpsI GAGTC 1 cut(s) 656
PpuMI RGGWCCY 1 cut(s) 815
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 890
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 890
PspN4I GGNNCC 6 cut(s) 54, 624, 687, 712, 750, 889
PspPI GGNCC 3 cut(s) 52, 815, 894
PspPPI RGGWCCY 1 cut(s) 815
PsuI RGATCY 1 cut(s) 84
PvuI CGATCG 1 cut(s) 534
RsaI GTAC 2 cut(s) 665, 872
RsaNI GTAC 2 cut(s) 664, 871
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 5, 296
SatI GCNGC 7 cut(s) 279, 469, 669, 672, 700, 709, 897
Sau3AI GATC 3 cut(s) 84, 531, 636
Sau96I GGNCC 3 cut(s) 52, 815, 894
SchI GAGTC 1 cut(s) 657
ScrFI CCNGG 1 cut(s) 892
SfcI CTRYAG 1 cut(s) 64
SfoI GGCGCC 2 cut(s) 687, 712
SinI GGWCC 2 cut(s) 52, 815
SmlI CTYRAG 2 cut(s) 92, 617
SmoI CTYRAG 2 cut(s) 92, 617
Sse9I AATT 6 cut(s) 172, 208, 217, 293, 609, 948
SspDI GGCGCC 2 cut(s) 685, 710
SspMI CTAG 1 cut(s) 821
StyD4I CCNGG 1 cut(s) 890
StyI CCWWGG 2 cut(s) 228, 564
TaaI ACNGT 3 cut(s) 428, 655, 748
TaiI ACGT 4 cut(s) 273, 399, 420, 741
TaqI TCGA 5 cut(s) 360, 369, 402, 522, 639
TasI AATT 6 cut(s) 172, 208, 217, 293, 609, 948
TatI WGTACW 1 cut(s) 870
TauI GCSGC 5 cut(s) 471, 671, 674, 711, 899
TfiI GAWTC 4 cut(s) 138, 404, 485, 576
Tru1I TTAA 2 cut(s) 5, 296
Tru9I TTAA 2 cut(s) 5, 296
TseFI GTSAC 6 cut(s) 418, 428, 580, 649, 655, 937
TseI GCWGC 2 cut(s) 278, 699
Tsp45I GTSAC 6 cut(s) 418, 428, 580, 649, 655, 937
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 4 cut(s) 269, 446, 487, 588
VpaK11BI GGWCC 2 cut(s) 52, 815
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 1 cut(s) 208
XspI CTAG 1 cut(s) 821
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.