Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

11214247 .. 11219682

Gene Structure 5436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G075100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAAGACGTAAAGAAGAGAAAGATAGAAGAGGCTTCGGGCAACGGTGAAGAAATCTCAACATATTCAGAAGACCACTTGCGCTCCTTGCTTGACCCCCTTGCTAAACCCCAGCTCGTCGATCTCCTCGCTAAACTAGGTTGCCAATATCCTTCAATTGCAGAAGAAATTAAGGGTGTTGCTAGTGCAGATCCTGTTCATCGAAAGCTTTTTGTTCGTGGGTTGGCTTGGAATACCTCATCAGATACCTTGCGTGCTGCATTTAGTGAGCATGGAGAAATTGAGGAAGGGGCTGTCATCTATGACAAAGCAAGCGGGAAATCACGCGGCTATGGTTTTATTACTTACAAGTATATGGAGTCAACTCAGCATGCGCTCAGAGCACCTAGCAAGTTGATTGATGGTCGCCTGGCTGTTTGTAATCTAGCGTGTGAGGGGTTAAGTGGGACAAGTGCTACCCTTGATCTTACCCAGAGGAAACTCTACATTGGGGGCTTGTCACCAAATGTCACAAGTGAGATGCTGCTCCACTTTTTTGGCAGGCATGGTGATATAGAAGAGGGTTCAGTTGCATATGACAAAGATACAAATGAGTCACGTGGGTTTGGCTTTGTTACATACAGGACAGTGGAGGCCGCAAAGAAGGCCATAGACGATCCGCAAAAGACCCTTGGGGGGAGGAATATCATTGTGAAGCTGGCTGATTCCCACAAGGGCAGAACAGTACAAGCACAGCTACCCCCAGCAATGGTTCCGATGGCCTTACCTCTAGCGGCTGGATATCCCCAGCCTGGAAAAGCACATGCAGGTGCAACCCCTGTTGGCTACGGTTATCCTCAAACTGTAGCAGCATACCCTGATTCTTCTTACCCAAGTCCTCCCACAGCTCCATACCAGGCACAATCACAAATTCCCTATCCATATTACATTGGCAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

314

Amino Acids

33.91

Weight (kDa)

6.72

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	797
Acc36I	ACCTGC	1 cut(s)	797
AccII	CGCG	1 cut(s)	327
AciI	CCGC	5 cut(s)	315, 327, 636, 659, 773
AclWI	GGATC	2 cut(s)	185, 650
AcsI	RAATTY	1 cut(s)	909
AcvI	CACGTG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	3 cut(s)	675, 748, 791
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	3 cut(s)	408, 790, 894
AluBI	AGCT	5 cut(s)	115, 208, 697, 736, 887
AluI	AGCT	5 cut(s)	115, 208, 697, 736, 887
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	185, 650
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	633, 645, 759
ApeKI	GCWGC	3 cut(s)	257, 523, 848
ApoI	RAATTY	1 cut(s)	909
AspLEI	GCGC	2 cut(s)	84, 376
AsuHPI	GGTGA	3 cut(s)	59, 492, 560
BbrPI	CACGTG	1 cut(s)	599
BbsI	GAAGAC	2 cut(s)	12, 78
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	244, 510, 860
BccI	CCATC	2 cut(s)	395, 751
BciT130I	CCWGG	3 cut(s)	410, 792, 896
BfaI	CTAG	5 cut(s)	137, 183, 387, 425, 770
BfmI	CTRYAG	1 cut(s)	843
BfuAI	ACCTGC	1 cut(s)	797
BisI	GCNGC	6 cut(s)	258, 328, 524, 636, 774, 849
BlsI	GCNGC	6 cut(s)	259, 329, 525, 637, 775, 850
Bme1390I	CCNGG	3 cut(s)	410, 792, 896
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	3 cut(s)	410, 792, 896
BmsI	GCATC	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	12, 78
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	675, 748, 791
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	3 cut(s)	410, 792, 896
BseDI	CCNNGG	1 cut(s)	670
BseLI	CCNNNNNNNGG	3 cut(s)	675, 748, 791
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	380, 391
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	244, 510, 860
BseYI	CCCAGC	3 cut(s)	111, 742, 786
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	635, 647, 761
BsiHKAI	GWGCWC	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	675, 748, 791
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	635, 647, 761
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	121, 190, 463, 655
BspACI	CCGC	5 cut(s)	315, 327, 636, 659, 773
BspANI	GGCC	3 cut(s)	635, 647, 761
BspCNI	CTCAG	2 cut(s)	379, 390
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	797
BspPI	GGATC	2 cut(s)	185, 650
BsrDI	GCAATG	1 cut(s)	753
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	4 cut(s)	121, 190, 463, 655
BssT1I	CCWWGG	1 cut(s)	670
Bst2UI	CCWGG	3 cut(s)	410, 792, 896
Bst4CI	ACNGT	5 cut(s)	47, 628, 724, 830, 844
Bst6I	CTCTTC	3 cut(s)	11, 24, 552
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	5 cut(s)	255, 313, 372, 542, 699
BstDEI	CTNAG	2 cut(s)	366, 377
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	84, 376
BstKTI	GATC	4 cut(s)	124, 193, 466, 658
BstMBI	GATC	4 cut(s)	121, 190, 463, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 380, 644
BstNI	CCWGG	3 cut(s)	410, 792, 896
BstNSI	RCATGY	2 cut(s)	374, 806
BstSCI	CCNGG	3 cut(s)	408, 790, 894
BstSFI	CTRYAG	1 cut(s)	843
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	244, 510, 860
BstV2I	GAAGAC	2 cut(s)	12, 78
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	635, 647, 761
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	797
Cac8I	GCNNGC	5 cut(s)	255, 313, 372, 542, 699
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	2 cut(s)	84, 376
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	4 cut(s)	272, 371, 545, 803
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	2 cut(s)	366, 377
DpnI	GATC	4 cut(s)	123, 192, 465, 657
DpnII	GATC	4 cut(s)	121, 190, 463, 655
Eam1104I	CTCTTC	3 cut(s)	11, 24, 552
EarI	CTCTTC	3 cut(s)	11, 24, 552
Eco130I	CCWWGG	1 cut(s)	670
Eco32I	GATATC	1 cut(s)	782
Eco72I	CACGTG	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	408, 790, 894
EcoRV	GATATC	1 cut(s)	782
EcoT14I	CCWWGG	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	4 cut(s)	275, 374, 548, 806
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	4 cut(s)	271, 370, 544, 802
FauI	CCCGC	1 cut(s)	308
FauNDI	CATATG	1 cut(s)	574
Fnu4HI	GCNGC	6 cut(s)	258, 328, 524, 636, 774, 849
Fsp4HI	GCNGC	6 cut(s)	258, 328, 524, 636, 774, 849
FspBI	CTAG	5 cut(s)	137, 183, 387, 425, 770
GlaI	GCGC	2 cut(s)	83, 375
GluI	GCNGC	6 cut(s)	258, 328, 524, 636, 774, 849
GsaI	CCCAGC	3 cut(s)	115, 746, 790
HaeIII	GGCC	3 cut(s)	635, 647, 761
HhaI	GCGC	2 cut(s)	84, 376
Hin1II	CATG	4 cut(s)	275, 374, 548, 806
Hin6I	GCGC	2 cut(s)	82, 374
HinP1I	GCGC	2 cut(s)	82, 374
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	4 cut(s)	359, 593, 704, 860
HphI	GGTGA	3 cut(s)	59, 492, 560
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	4 cut(s)	70, 244, 380, 756
Hpy8I	GTNNAC	1 cut(s)	363
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	162, 281, 637
HpyCH4III	ACNGT	5 cut(s)	47, 628, 724, 830, 844
HpyCH4IV	ACGT	2 cut(s)	9, 598
HpyCH4V	TGCA	6 cut(s)	161, 188, 260, 572, 806, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 380, 644
HpyF3I	CTNAG	2 cut(s)	366, 377
HpySE526I	ACGT	2 cut(s)	9, 598
Hsp92II	CATG	4 cut(s)	275, 374, 548, 806
HspAI	GCGC	2 cut(s)	82, 374
Kzo9I	GATC	4 cut(s)	121, 190, 463, 655
LmnI	GCTCC	3 cut(s)	89, 531, 892
Lsp1109I	GCAGC	3 cut(s)	244, 510, 860
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	5 cut(s)	137, 183, 387, 425, 770
MaeII	ACGT	2 cut(s)	9, 598
MaeIII	GTNAC	4 cut(s)	498, 508, 594, 613
MalI	GATC	4 cut(s)	123, 192, 465, 657
MboI	GATC	4 cut(s)	121, 190, 463, 655
MboII	GAAGA	8 cut(s)	17, 28, 41, 62, 83, 176, 569, 855
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	4 cut(s)	156, 168, 279, 909
MlyI	GAGTC	2 cut(s)	368, 602
MseI	TTAA	2 cut(s)	171, 440
MslI	CAYNNNNRTG	1 cut(s)	807
MspR9I	CCNGG	3 cut(s)	410, 792, 896
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	3 cut(s)	410, 792, 896
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	88, 380, 644
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	4 cut(s)	121, 190, 463, 655
NlaIII	CATG	4 cut(s)	275, 374, 548, 806
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	3 cut(s)	498, 508, 594
NspI	RCATGY	2 cut(s)	374, 806
PaeI	GCATGC	1 cut(s)	374
PaqCI	CACCTGC	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	704, 860
PkrI	GCNGC	6 cut(s)	259, 329, 525, 637, 775, 850
PleI	GAGTC	2 cut(s)	367, 601
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	2 cut(s)	367, 601
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	408, 790, 894
PspCI	CACGTG	1 cut(s)	599
PspFI	CCCAGC	3 cut(s)	111, 742, 786
PspGI	CCWGG	3 cut(s)	408, 790, 894
PspN4I	GGNNCC	1 cut(s)	753
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	171, 440
SatI	GCNGC	6 cut(s)	258, 328, 524, 636, 774, 849
Sau3AI	GATC	4 cut(s)	121, 190, 463, 655
SchI	GAGTC	2 cut(s)	368, 602
ScrFI	CCNGG	3 cut(s)	410, 792, 896
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	807
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	4 cut(s)	156, 168, 279, 909
SsiI	CCGC	5 cut(s)	315, 327, 636, 659, 773
SspMI	CTAG	5 cut(s)	137, 183, 387, 425, 770
StyD4I	CCNGG	3 cut(s)	408, 790, 894
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	5 cut(s)	47, 628, 724, 830, 844
TaiI	ACGT	2 cut(s)	12, 601
TaqI	TCGA	2 cut(s)	120, 202
TasI	AATT	4 cut(s)	156, 168, 279, 909
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	3 cut(s)	330, 638, 776
TfiI	GAWTC	2 cut(s)	704, 860
Tru1I	TTAA	2 cut(s)	171, 440
Tru9I	TTAA	2 cut(s)	171, 440
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	3 cut(s)	498, 508, 594
TseI	GCWGC	3 cut(s)	257, 523, 848
Tsp45I	GTSAC	3 cut(s)	498, 508, 594
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	633
XapI	RAATTY	1 cut(s)	909
XceI	RCATGY	2 cut(s)	374, 806
XspI	CTAG	5 cut(s)	137, 183, 387, 425, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.