Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

15457789 .. 15462487

Gene Structure 4699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0180400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGGCGTCGCTCTCGAACTTGACGGAGGGGGCGAACGGGTCGGGTCTGGGTCCGGGTCTGGGCGACATCCCGGAGAACTGCGTCGCCTGCGTTTTCATGTACCTGACTCCGCCGGAGATTTGCAACCTCGCCAGGCTCAACCGGGCGTTCCGCGGCGCGGCGTCGTCGGATGCGGTTTGGGAATCGAAGCTGCCCCCTAATTACCATGGTCTGCTTGATTTGCTGCCTCCCGAGAGGTACCAGAACCTGTCGAAGAAGGACATCTTTGCCCTCCTCTCCCGCCCCGTGCCTTACGACGATGCCAATAAGGTATTGTGGCTTGACAGGGTCACCGGAAGGGTTTGCATGTCGATCTCTGCAAAGGCCATGGCTATAACAGGGATTGAGGATCGGCGATACTGGAATTGGATTCCTACTGAAGAATCAAGGTTTCATGTTGTAGCTTATTTACAACAGATATGGTGGTATGAGGTGGATGGGGTTGTGAAGTTCCCTTTTCCTGCGGATATCTACACCCTGTCTTTCAGGCTTCACATTGGAAGATTTGCAAAAAGGTTGGGACGGCGTGTTTGCAACTTTGAGCACACCCATGGTTGGGATATAAAGCCAGTACGATTTGAGTTGTGGACTCCAGATGGTCAGCAAGCATCATATGAGTGCTGCTTGGATCAAATTGAACATGACGATGCCTATGGCAGTCATAAGCGTGGATGCTGGGTTGATTACAAGGTTGGTGAGTTTATCGTCACTGATGCAGATCCTGTGACCGAAGTTAGATTTTCCATGAAACAGATTGATTGCACACATTCCAAAGGTGGGCTATGCGTCGATTCTGTTTTTATTATCCCTAGTAATTTGAAAGAGCGCAAAAGAAAAGGGGTTTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

297

Amino Acids

33.75

Weight (kDa)

7.06

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	22 - 62	7.2e-06	F-box-like
PP2	PF14299	115 - 284	5.8e-38	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	2 cut(s)	156, 161
AciI	CCGC	7 cut(s)	113, 154, 156, 161, 176, 283, 506
AclWI	GGATC	3 cut(s)	399, 678, 755
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	2 cut(s)	8, 164
AfaI	GTAC	3 cut(s)	104, 242, 615
AfiI	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
AgsI	TTSAA	3 cut(s)	680, 862, 889
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	193, 446
AluI	AGCT	2 cut(s)	193, 446
Alw21I	GWGCWC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	399, 678, 755
AlwNI	CAGNNNCTG	2 cut(s)	250, 764
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	193, 226, 663
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
Asp718I	GGTACC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	161, 870
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	3 cut(s)	57, 74, 146
AsuHPI	GGTGA	2 cut(s)	325, 749
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	180, 213, 650
BccI	CCATC	2 cut(s)	473, 632
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	3 cut(s)	57, 74, 146
BfaI	CTAG	1 cut(s)	852
BisI	GCNGC	5 cut(s)	157, 162, 194, 227, 664
BlsI	GCNGC	5 cut(s)	158, 163, 195, 228, 665
Bme1390I	CCNGG	4 cut(s)	57, 74, 136, 146
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	54, 242
BmrFI	CCNGG	4 cut(s)	57, 74, 136, 146
BmsI	GCATC	6 cut(s)	163, 292, 659, 679, 704, 745
BpmI	CTGGAG	1 cut(s)	618
BpuMI	CCSGG	3 cut(s)	57, 74, 146
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	2 cut(s)	8, 164
BsaJI	CCNNGG	4 cut(s)	154, 208, 369, 592
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
Bse1I	ACTGG	2 cut(s)	407, 611
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	4 cut(s)	154, 208, 369, 592
BseGI	GGATG	4 cut(s)	69, 178, 484, 719
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
BseNI	ACTGG	2 cut(s)	407, 611
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	180, 213, 650
BseYI	CCCAGC	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	156, 161
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	5 cut(s)	56, 74, 116, 145, 336
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
BsmFI	GGGAC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	354, 391, 670, 760
Bsp19I	CCATGG	3 cut(s)	208, 369, 592
BspACI	CCGC	7 cut(s)	113, 154, 156, 161, 176, 283, 506
BspANI	GGCC	1 cut(s)	368
BspFNI	CGCG	2 cut(s)	156, 161
BspLI	GGNNCC	2 cut(s)	54, 242
BspPI	GGATC	3 cut(s)	399, 678, 755
BspT107I	GGYRCC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	407, 611
BssECI	CCNNGG	4 cut(s)	154, 208, 369, 592
BssMI	GATC	4 cut(s)	354, 391, 670, 760
BssNI	GRCGYC	2 cut(s)	8, 164
BssT1I	CCWWGG	3 cut(s)	208, 369, 592
Bst2UI	CCWGG	1 cut(s)	136
BstACI	GRCGYC	2 cut(s)	8, 164
BstC8I	GCNNGC	2 cut(s)	91, 648
BstDSI	CCRYGG	4 cut(s)	154, 208, 369, 592
BstEII	GGTNACC	1 cut(s)	331
BstF5I	GGATG	4 cut(s)	69, 178, 484, 719
BstFNI	CGCG	2 cut(s)	156, 161
BstHHI	GCGC	2 cut(s)	161, 870
BstKTI	GATC	4 cut(s)	357, 394, 673, 763
BstMBI	GATC	4 cut(s)	354, 391, 670, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 223
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	352
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	55, 72, 134, 144
BstUI	CGCG	2 cut(s)	156, 161
BstV1I	GCAGC	3 cut(s)	180, 213, 650
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	4 cut(s)	154, 208, 369, 592
BtsCI	GGATG	4 cut(s)	69, 178, 484, 719
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	91, 648
CaiI	CAGNNNCTG	2 cut(s)	250, 764
CfoI	GCGC	2 cut(s)	161, 870
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	3 cut(s)	73, 153, 817
Csp6I	GTAC	3 cut(s)	103, 241, 614
CviAII	CATG	8 cut(s)	100, 209, 349, 370, 437, 593, 683, 787
CviJI	RGCY	9 cut(s)	139, 193, 322, 368, 374, 446, 532, 610, 823
CviKI_1	RGCY	9 cut(s)	139, 193, 322, 368, 374, 446, 532, 610, 823
CviQI	GTAC	3 cut(s)	103, 241, 614
DpnI	GATC	4 cut(s)	356, 393, 672, 762
DpnII	GATC	4 cut(s)	354, 391, 670, 760
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	208, 369, 592
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	3 cut(s)	208, 369, 592
ErhI	CCWWGG	3 cut(s)	208, 369, 592
FaeI	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	8 cut(s)	99, 208, 348, 369, 436, 592, 682, 786
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	5 cut(s)	157, 162, 194, 227, 664
FokI	GGATG	4 cut(s)	56, 185, 491, 726
Fsp4HI	GCNGC	5 cut(s)	157, 162, 194, 227, 664
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	2 cut(s)	160, 869
GluI	GCNGC	5 cut(s)	157, 162, 194, 227, 664
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	5 cut(s)	56, 74, 116, 145, 336
HgaI	GACGC	3 cut(s)	73, 153, 817
HhaI	GCGC	2 cut(s)	161, 870
Hin1I	GRCGYC	2 cut(s)	8, 164
Hin1II	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
Hin6I	GCGC	2 cut(s)	159, 868
HinP1I	GCGC	2 cut(s)	159, 868
HinfI	GANTC	6 cut(s)	109, 185, 412, 425, 631, 833
HpaII	CCGG	5 cut(s)	56, 74, 116, 145, 336
HphI	GGTGA	2 cut(s)	325, 749
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	16, 233, 635
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	6 cut(s)	13, 89, 169, 172, 302, 833
HpyAV	CCTTC	2 cut(s)	253, 333
HpyCH4V	TGCA	7 cut(s)	126, 348, 362, 551, 576, 758, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 223
Hsp92I	GRCGYC	2 cut(s)	8, 164
Hsp92II	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
HspAI	GCGC	2 cut(s)	159, 868
KpnI	GGTACC	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	354, 391, 670, 760
Lsp1109I	GCAGC	3 cut(s)	180, 213, 650
LweI	GCATC	6 cut(s)	163, 292, 659, 679, 704, 745
MaeI	CTAG	1 cut(s)	852
MaeIII	GTNAC	3 cut(s)	331, 748, 766
MalI	GATC	4 cut(s)	356, 393, 672, 762
MboI	GATC	4 cut(s)	354, 391, 670, 760
MboII	GAAGA	3 cut(s)	268, 434, 555
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	4 cut(s)	202, 406, 675, 856
MlyI	GAGTC	2 cut(s)	103, 625
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	22, 140, 231, 240, 284, 287, 382, 466
MslI	CAYNNNNRTG	4 cut(s)	591, 658, 687, 708
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	5 cut(s)	56, 74, 116, 145, 336
MspR9I	CCNGG	4 cut(s)	57, 74, 136, 146
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	2 cut(s)	156, 161
MwoI	GCNNNNNNNGC	2 cut(s)	90, 223
NciI	CCSGG	3 cut(s)	57, 74, 146
NcoI	CCATGG	3 cut(s)	208, 369, 592
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	4 cut(s)	354, 391, 670, 760
NlaIII	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
NlaIV	GGNNCC	2 cut(s)	54, 242
NmuCI	GTSAC	3 cut(s)	331, 748, 766
NspI	RCATGY	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	4 cut(s)	185, 412, 425, 833
PflFI	GACNNNGTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	5 cut(s)	158, 163, 195, 228, 665
PleI	GAGTC	2 cut(s)	103, 625
PpsI	GAGTC	2 cut(s)	103, 625
Psp6I	CCWGG	1 cut(s)	134
PspEI	GGTNACC	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	54, 242
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	2 cut(s)	250, 764
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	3 cut(s)	104, 242, 615
RsaNI	GTAC	3 cut(s)	103, 241, 614
RseI	CAYNNNNRTG	4 cut(s)	591, 658, 687, 708
SacII	CCGCGG	1 cut(s)	157
SatI	GCNGC	5 cut(s)	157, 162, 194, 227, 664
Sau3AI	GATC	4 cut(s)	354, 391, 670, 760
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	103, 625
ScrFI	CCNGG	4 cut(s)	57, 74, 136, 146
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	6 cut(s)	163, 292, 659, 679, 704, 745
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	4 cut(s)	591, 658, 687, 708
Sse9I	AATT	4 cut(s)	202, 406, 675, 856
SsiI	CCGC	7 cut(s)	113, 154, 156, 161, 176, 283, 506
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	4 cut(s)	55, 72, 134, 144
StyI	CCWWGG	3 cut(s)	208, 369, 592
TaqI	TCGA	5 cut(s)	17, 188, 254, 353, 831
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	4 cut(s)	202, 406, 675, 856
TauI	GCSGC	2 cut(s)	159, 164
TfiI	GAWTC	4 cut(s)	185, 412, 425, 833
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	3 cut(s)	331, 748, 766
TseI	GCWGC	3 cut(s)	193, 226, 663
Tsp45I	GTSAC	3 cut(s)	331, 748, 766
TspDTI	ATGAA	3 cut(s)	88, 425, 803
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	757
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.