RNA recognition motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 17 |
| AatII | GACGTC | 1 cut(s) | 60 |
| AccI | GTMKAC | 1 cut(s) | 162 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AgsI | TTSAA | 1 cut(s) | 65 |
| AluBI | AGCT | 1 cut(s) | 109 |
| AluI | AGCT | 1 cut(s) | 109 |
| AoxI | GGCC | 2 cut(s) | 174, 195 |
| AspLEI | GCGC | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| BbvCI | CCTCAGC | 1 cut(s) | 119 |
| BccI | CCATC | 1 cut(s) | 185 |
| BceAI | ACGGC | 1 cut(s) | 23 |
| BfoI | RGCGCY | 1 cut(s) | 132 |
| Bpu10I | CCTNAGC | 1 cut(s) | 119 |
| BpuEI | CTTGAG | 1 cut(s) | 89 |
| BsaAI | YACGTR | 1 cut(s) | 16 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 1 cut(s) | 124 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseDI | CCNNGG | 1 cut(s) | 124 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseMII | CTCAG | 1 cut(s) | 133 |
| BshFI | GGCC | 2 cut(s) | 176, 197 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsnI | GGCC | 2 cut(s) | 176, 197 |
| BspANI | GGCC | 2 cut(s) | 176, 197 |
| BspCNI | CTCAG | 1 cut(s) | 132 |
| BssECI | CCNNGG | 1 cut(s) | 124 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 1 cut(s) | 89 |
| Bst6I | CTCTTC | 1 cut(s) | 105 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstBAI | YACGTR | 1 cut(s) | 16 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 170 |
| BstH2I | RGCGCY | 1 cut(s) | 132 |
| BstHHI | GCGC | 1 cut(s) | 131 |
| BsuRI | GGCC | 2 cut(s) | 176, 197 |
| CfoI | GCGC | 1 cut(s) | 131 |
| CviJI | RGCY | 4 cut(s) | 109, 123, 176, 197 |
| CviKI_1 | RGCY | 4 cut(s) | 109, 123, 176, 197 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 17 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 17 |
| Eam1104I | CTCTTC | 1 cut(s) | 105 |
| EarI | CTCTTC | 1 cut(s) | 105 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 170 |
| FaiI | YATR | 1 cut(s) | 185 |
| FblI | GTMKAC | 1 cut(s) | 162 |
| GlaI | GCGC | 1 cut(s) | 130 |
| HaeII | RGCGCY | 1 cut(s) | 132 |
| HaeIII | GGCC | 2 cut(s) | 176, 197 |
| HhaI | GCGC | 1 cut(s) | 131 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin6I | GCGC | 1 cut(s) | 129 |
| HinP1I | GCGC | 1 cut(s) | 129 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HindIII | AAGCTT | 1 cut(s) | 107 |
| HinfI | GANTC | 2 cut(s) | 65, 146 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 1 cut(s) | 163 |
| Hpy8I | GTNNAC | 1 cut(s) | 163 |
| Hpy99I | CGWCG | 2 cut(s) | 44, 164 |
| HpyCH4III | ACNGT | 1 cut(s) | 89 |
| HpyCH4IV | ACGT | 2 cut(s) | 15, 57 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| HpySE526I | ACGT | 2 cut(s) | 15, 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| HspAI | GCGC | 1 cut(s) | 129 |
| LmnI | GCTCC | 1 cut(s) | 156 |
| MaeII | ACGT | 2 cut(s) | 15, 57 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MboII | GAAGA | 1 cut(s) | 92 |
| MnlI | CCTC | 4 cut(s) | 80, 104, 128, 134 |
| NmeAIII | GCCGAG | 1 cut(s) | 105 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 186 |
| PfeI | GAWTC | 2 cut(s) | 65, 146 |
| Ppu21I | YACGTR | 1 cut(s) | 16 |
| SalI | GTCGAC | 1 cut(s) | 161 |
| SetI | ASST | 6 cut(s) | 18, 60, 96, 111, 168, 203 |
| SgeI | CNNG | 9 cut(s) | 20, 26, 64, 74, 101, 118, 137, 179, 184 |
| SmlI | CTYRAG | 1 cut(s) | 104 |
| SmoI | CTYRAG | 1 cut(s) | 104 |
| TaaI | ACNGT | 1 cut(s) | 89 |
| TaiI | ACGT | 2 cut(s) | 18, 60 |
| TaqI | TCGA | 3 cut(s) | 21, 162, 189 |
| TfiI | GAWTC | 2 cut(s) | 65, 146 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspGWI | ACGGA | 1 cut(s) | 68 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 170 |
| XmiI | GTMKAC | 1 cut(s) | 162 |
| ZraI | GACGTC | 1 cut(s) | 58 |