Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

6733492 .. 6734313

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1058300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGGACGTAAAGAAGAGAAAGCTCGAAGATGCTTCGGGCAACGATGACGATATCTCAACAAATTCGGAGGACCACCTTCGCTCCTTGCTCGAACCTCTTGCTAAATCCCAGCTGGTCGATCTCCTCGCCAAACTAGGTTCCCAATATCCTTCAATTGCAGAAGAAATTAAGGGTGTTGCTAGTGCAGATCCTGTTCATAGAAAGCTTTTCGTTCGTGGGTTGGCCTGGAACACTTCTTCCGAAACCTTGCGTGCTGCATTTAGTGAGCATGGAGAGATTGAGGAAGGGGCTGTCATCTATGAAAAAGCAAGTGGGAAATCGCGTGGCTATGGTTTTATTACTTACAAGCACATGGAATCTACTCAGTGTGCGCTCAGAGCACCTAGCAAGTTGATTGATGTAAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

138

Amino Acids

15.08

Weight (kDa)

5.58

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	70 - 128	2.1e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	325
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	227
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	3 cut(s)	25, 115, 208
AluI	AGCT	3 cut(s)	25, 115, 208
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	229
BfaI	CTAG	3 cut(s)	137, 183, 387
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
BseBI	CCWGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	380, 391
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	121, 190
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	379, 390
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	185
BssMI	GATC	2 cut(s)	121, 190
Bst2UI	CCWGG	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	366, 377
BstFNI	CGCG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	124, 193
BstMBI	GATC	2 cut(s)	121, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	227
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	3 cut(s)	272, 355, 409
CviJI	RGCY	6 cut(s)	25, 115, 208, 227, 293, 330
CviKI_1	RGCY	6 cut(s)	25, 115, 208, 227, 293, 330
DdeI	CTNAG	2 cut(s)	366, 377
DpnI	GATC	2 cut(s)	123, 192
DpnII	GATC	2 cut(s)	121, 190
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	55
FaeI	CATG	3 cut(s)	275, 358, 412
FaiI	YATR	6 cut(s)	201, 273, 303, 333, 356, 410
FatI	CATG	3 cut(s)	271, 354, 408
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	3 cut(s)	137, 183, 387
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	275, 358, 412
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	70, 244, 380
HpyAV	CCTTC	3 cut(s)	89, 162, 281
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	161, 188, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	366, 377
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	275, 358, 412
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	121, 190
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	5 cut(s)	101, 125, 207, 214, 241
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	3 cut(s)	137, 183, 387
MaeII	ACGT	1 cut(s)	9
MalI	GATC	2 cut(s)	123, 192
MboI	GATC	2 cut(s)	121, 190
MboII	GAAGA	4 cut(s)	28, 41, 176, 231
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	3 cut(s)	64, 156, 168
MnlI	CCTC	4 cut(s)	64, 108, 137, 277
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	2 cut(s)	121, 190
NlaIII	CATG	3 cut(s)	275, 358, 412
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	121, 190
Sau96I	GGNCC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	9 cut(s)	12, 27, 81, 100, 117, 142, 210, 251, 388
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	3 cut(s)	64, 156, 168
SspMI	CTAG	3 cut(s)	137, 183, 387
StyD4I	CCNGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	27, 93, 120
TasI	AATT	3 cut(s)	64, 156, 168
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	374
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	188, 318
TspRI	CASTG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	3 cut(s)	137, 183, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.