FvH4_3g07890

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000611
Physical Location & Seq
Reverse (-)
4658573 .. 4659450
878 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07890.t1

Sequence Viewer

Length: 762 bp
ATGGACTCAACAAAGAAGCGCAAGACGGAGGAGAACGGCGACGTTTCGACGGCGCCGCCTTCTTCCCAATCCACAACCCTAACCCCCGAAGACTTCCGCAAGCTCCTCCAGCCCATGTCCCACGACCACCTCGTCGAAATCCTCCAAAACGCCGTCGTTCGCCACCCCGACGTCCTCGAATCCCTCCGCCACGTCACCAACCGCGACCTCACCCTCCGCAAGCTCTTCGTCCGCGGCCTCAGCGCCGACACCACCACCGACTCCCTCCGCTCCGTCTTCTCCTCCTTCGGCGACCTCGACGAGGCCATCGTCATCTTCGACAAGGCCACCGGCAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTCATTGCTCTCAGGGAGCCGAGCAAGAAGATCGACGGCAGGGTCACCGTCACGCAGTACGCCGCCGCCGGCCATTCCGCCCCCTTCAGTAGCAGCAGCAACGGCAGCGCCGACGTCTCCGCCAGGAAGATTTACGTCGGCACGGTGCCGTTTGATATCTCCTCCGAGAGATTGCTGGCTGCGTTTTCGGCTTTCGGCGAGATTGAAGAAGGCCCCCTAGGGTTTGATAAGGCCACCGGAAAATCAAAGGGCTTTGCTTTCTTTGTGTACAAAACCGAGGAAGGTGCCCGGGCCGCGCTGGCTGAGCCTATGAAGAACATTGATGGCCATCAGGCCACAGCCTCAGCCGGGTCAGTACCCGGGTTATCCTGGTCGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

254

Amino Acids

27.24

Weight (kDa)

6.39

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 75 - 142 1.6e-15 RNA recognition motif
RRM_7 PF16367 169 - 230 1.5e-06 RNA recognition motif
RRM_1 PF00076 171 - 237 1.5e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 422
AatII GACGTC 2 cut(s) 174, 498
AccB1I GGYRCC 3 cut(s) 52, 526, 665
AccBSI CCGCTC 1 cut(s) 270
AccII CGCG 3 cut(s) 204, 234, 677
AcoI YGGCCR 2 cut(s) 451, 706
AcuI CTGAAG 1 cut(s) 451
AcyI GRCGYC 3 cut(s) 53, 171, 495
AfaI GTAC 3 cut(s) 440, 650, 738
AfiI CCNNNNNNNGG 2 cut(s) 301, 729
AgsI TTSAA 2 cut(s) 364, 587
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 2 cut(s) 503, 749
AluBI AGCT 2 cut(s) 103, 223
AluI AGCT 2 cut(s) 103, 223
Alw26I GTCTC 1 cut(s) 502
Ama87I CYCGRG 2 cut(s) 669, 740
AoxI GGCC 9 cut(s) 235, 303, 324, 451, 592, 612, 672, 706, 714
ApeKI GCWGC 4 cut(s) 474, 477, 486, 560
AspA2I CCTAGG 1 cut(s) 598
AspLEI GCGC 5 cut(s) 21, 55, 245, 491, 679
AspS9I GGNCC 2 cut(s) 593, 672
AsuC2I CCSGG 5 cut(s) 670, 671, 730, 741, 742
AsuHPI GGTGA 4 cut(s) 187, 202, 349, 418
AvaI CYCGRG 2 cut(s) 669, 740
AvrII CCTAGG 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 670
BalI TGGCCA 1 cut(s) 708
BanI GGYRCC 3 cut(s) 52, 526, 665
BbsI GAAGAC 2 cut(s) 96, 268
BbvCI CCTCAGC 2 cut(s) 239, 724
BbvI GCAGC 4 cut(s) 486, 489, 498, 547
BccI CCATC 3 cut(s) 314, 698, 717
BceAI ACGGC 6 cut(s) 52, 66, 137, 433, 499, 514
BcgI CGANNNNNNTGC 6 cut(s) 208, 242, 394, 428, 647, 681
BciT130I CCWGG 2 cut(s) 505, 751
BcnI CCSGG 5 cut(s) 670, 671, 730, 741, 742
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 1 cut(s) 599
BfoI RGCGCY 3 cut(s) 56, 246, 492
BglI GCCNNNNNGGC 1 cut(s) 680
BisI GCNGC 9 cut(s) 56, 235, 444, 447, 475, 478, 487, 561, 675
BlnI CCTAGG 1 cut(s) 598
BlpI GCTNAGC 1 cut(s) 684
BlsI GCNGC 9 cut(s) 57, 236, 445, 448, 476, 479, 488, 562, 676
Bme1390I CCNGG 7 cut(s) 505, 670, 671, 730, 741, 742, 751
BmeT110I CYCGRG 2 cut(s) 669, 740
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 593, 672
BmiI GGNNCC 5 cut(s) 54, 399, 528, 595, 667
BmrFI CCNGG 7 cut(s) 505, 670, 671, 730, 741, 742, 751
BpiI GAAGAC 2 cut(s) 96, 268
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 2 cut(s) 239, 724
Bpu1102I GCTNAGC 1 cut(s) 684
BpuMI CCSGG 5 cut(s) 670, 671, 730, 741, 742
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 3 cut(s) 53, 171, 495
BsaJI CCNNGG 6 cut(s) 232, 339, 598, 657, 669, 740
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 729
Bse118I RCCGGY 2 cut(s) 329, 449
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 2 cut(s) 505, 751
BseDI CCNNGG 6 cut(s) 232, 339, 598, 657, 669, 740
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 301, 729
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 4 cut(s) 253, 406, 675, 738
BseRI GAGGAG 4 cut(s) 44, 95, 271, 532
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 4 cut(s) 486, 489, 498, 547
Bsh1236I CGCG 3 cut(s) 204, 234, 677
BshFI GGCC 9 cut(s) 237, 305, 326, 453, 594, 614, 674, 708, 716
BshNI GGYRCC 3 cut(s) 52, 526, 665
BsiHKCI CYCGRG 2 cut(s) 669, 740
BsiSI CCGG 6 cut(s) 330, 450, 618, 670, 729, 741
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 301, 729
BsmAI GTCTC 1 cut(s) 502
BsmBI CGTCTC 1 cut(s) 502
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 9 cut(s) 237, 305, 326, 453, 594, 614, 674, 708, 716
BsoBI CYCGRG 2 cut(s) 669, 740
Bsp1286I GDGCHC 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 1 cut(s) 411
Bsp1720I GCTNAGC 1 cut(s) 684
BspANI GGCC 9 cut(s) 237, 305, 326, 453, 594, 614, 674, 708, 716
BspCNI CTCAG 4 cut(s) 252, 405, 676, 737
BspFNI CGCG 3 cut(s) 204, 234, 677
BspLI GGNNCC 5 cut(s) 54, 399, 528, 595, 667
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 3 cut(s) 52, 526, 665
BsrBI CCGCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 2 cut(s) 329, 449
BsrGI TGTACA 1 cut(s) 648
BssAI RCCGGY 2 cut(s) 329, 449
BssECI CCNNGG 6 cut(s) 232, 339, 598, 657, 669, 740
BssMI GATC 1 cut(s) 411
BssNI GRCGYC 3 cut(s) 53, 171, 495
BssT1I CCWWGG 2 cut(s) 339, 598
Bst2UI CCWGG 2 cut(s) 505, 751
Bst4CI ACNGT 2 cut(s) 430, 526
Bst6I CTCTTC 1 cut(s) 230
BstACI GRCGYC 3 cut(s) 53, 171, 495
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 6 cut(s) 101, 221, 369, 451, 558, 681
BstDEI CTNAG 4 cut(s) 239, 392, 684, 724
BstDSI CCRYGG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 424
BstENI CCTNNNNNAGG 1 cut(s) 299
BstFNI CGCG 3 cut(s) 204, 234, 677
BstH2I RGCGCY 3 cut(s) 56, 246, 492
BstHHI GCGC 5 cut(s) 21, 55, 245, 491, 679
BstKTI GATC 1 cut(s) 414
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 1 cut(s) 411
BstNI CCWGG 2 cut(s) 505, 751
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 7 cut(s) 503, 668, 669, 728, 739, 740, 749
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 3 cut(s) 204, 234, 677
BstV1I GCAGC 4 cut(s) 486, 489, 498, 547
BstV2I GAAGAC 2 cut(s) 96, 268
BsuRI GGCC 9 cut(s) 237, 305, 326, 453, 594, 614, 674, 708, 716
BtgI CCRYGG 1 cut(s) 232
BtrI CACGTC 1 cut(s) 193
Cac8I GCNNGC 6 cut(s) 101, 221, 369, 451, 558, 681
CfoI GCGC 5 cut(s) 21, 55, 245, 491, 679
Cfr10I RCCGGY 2 cut(s) 329, 449
Cfr13I GGNCC 2 cut(s) 593, 672
Cfr42I CCGCGG 1 cut(s) 235
Cfr9I CCCGGG 2 cut(s) 669, 740
Csp6I GTAC 3 cut(s) 439, 649, 737
CviAII CATG 1 cut(s) 115
CviQI GTAC 3 cut(s) 439, 649, 737
DdeI CTNAG 4 cut(s) 239, 392, 684, 724
DinI GGCGCC 1 cut(s) 54
DpnI GATC 1 cut(s) 413
DpnII GATC 1 cut(s) 411
DrdI GACNNNNNNGTC 2 cut(s) 131, 422
DseDI GACNNNNNNGTC 2 cut(s) 131, 422
EaeI YGGCCR 2 cut(s) 451, 706
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 3 cut(s) 176, 448, 490
Eco130I CCWWGG 2 cut(s) 339, 598
Eco32I GATATC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 451
Eco88I CYCGRG 2 cut(s) 669, 740
Eco91I GGTNACC 1 cut(s) 424
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 593
EcoO65I GGTNACC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 503, 749
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 2 cut(s) 339, 598
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 339, 598
Esp3I CGTCTC 1 cut(s) 502
FaeI CATG 1 cut(s) 118
FaiI YATR 3 cut(s) 116, 692, 760
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 9 cut(s) 56, 235, 444, 447, 475, 478, 487, 561, 675
Fsp4HI GCNGC 9 cut(s) 56, 235, 444, 447, 475, 478, 487, 561, 675
FspBI CTAG 1 cut(s) 599
GlaI GCGC 5 cut(s) 20, 54, 244, 490, 678
GluI GCNGC 9 cut(s) 56, 235, 444, 447, 475, 478, 487, 561, 675
GsuI CTGGAG 1 cut(s) 92
HaeII RGCGCY 3 cut(s) 56, 246, 492
HaeIII GGCC 9 cut(s) 237, 305, 326, 453, 594, 614, 674, 708, 716
HapII CCGG 6 cut(s) 330, 450, 618, 670, 729, 741
HhaI GCGC 5 cut(s) 21, 55, 245, 491, 679
Hin1I GRCGYC 3 cut(s) 53, 171, 495
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 5 cut(s) 19, 53, 243, 489, 677
HinP1I GCGC 5 cut(s) 19, 53, 243, 489, 677
HinfI GANTC 4 cut(s) 5, 179, 260, 351
HpaII CCGG 6 cut(s) 330, 450, 618, 670, 729, 741
HphI GGTGA 4 cut(s) 187, 202, 349, 418
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 1 cut(s) 547
Hpy8I GTNNAC 1 cut(s) 649
HpyAV CCTTC 6 cut(s) 69, 295, 370, 475, 584, 656
HpyCH4III ACNGT 2 cut(s) 430, 526
HpyCH4IV ACGT 5 cut(s) 42, 171, 192, 495, 516
HpyF3I CTNAG 4 cut(s) 239, 392, 684, 724
HpySE526I ACGT 5 cut(s) 42, 171, 192, 495, 516
Hsp92I GRCGYC 3 cut(s) 53, 171, 495
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 5 cut(s) 19, 53, 243, 489, 677
KasI GGCGCC 1 cut(s) 52
KroI GCCGGC 1 cut(s) 449
KroNI GCCGGC 1 cut(s) 451
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 1 cut(s) 411
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 3 cut(s) 108, 275, 397
Lsp1109I GCAGC 4 cut(s) 486, 489, 498, 547
MaeI CTAG 1 cut(s) 599
MaeII ACGT 5 cut(s) 42, 171, 192, 495, 516
MaeIII GTNAC 4 cut(s) 193, 355, 424, 430
MalI GATC 1 cut(s) 413
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 411
MboII GAAGA 9 cut(s) 54, 101, 217, 268, 307, 421, 520, 599, 706
MhlI GDGCHC 1 cut(s) 670
MlsI TGGCCA 1 cut(s) 708
MluNI TGGCCA 1 cut(s) 708
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 254
Mox20I TGGCCA 1 cut(s) 708
MroNI GCCGGC 1 cut(s) 449
MscI TGGCCA 1 cut(s) 708
Msp20I TGGCCA 1 cut(s) 708
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 6 cut(s) 330, 450, 618, 670, 729, 741
MspR9I CCNGG 7 cut(s) 505, 670, 671, 730, 741, 742, 751
MvaI CCWGG 2 cut(s) 505, 751
MvnI CGCG 3 cut(s) 204, 234, 677
NaeI GCCGGC 1 cut(s) 451
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 5 cut(s) 670, 671, 730, 741, 742
NdeII GATC 1 cut(s) 411
NgoMIV GCCGGC 1 cut(s) 449
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 5 cut(s) 54, 399, 528, 595, 667
NmeAIII GCCGAG 1 cut(s) 426
NmuCI GTSAC 4 cut(s) 193, 355, 424, 430
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 5 cut(s) 129, 294, 306, 315, 489
PdiI GCCGGC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 179, 351
PkrI GCNGC 9 cut(s) 57, 236, 445, 448, 476, 479, 488, 562, 676
PleI GAGTC 1 cut(s) 254
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 503, 749
PspEI GGTNACC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 503, 749
PspN4I GGNNCC 5 cut(s) 54, 399, 528, 595, 667
PspPI GGNCC 2 cut(s) 593, 672
RsaI GTAC 3 cut(s) 440, 650, 738
RsaNI GTAC 3 cut(s) 439, 649, 737
SacII CCGCGG 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 230
SatI GCNGC 9 cut(s) 56, 235, 444, 447, 475, 478, 487, 561, 675
Sau3AI GATC 1 cut(s) 411
Sau96I GGNCC 2 cut(s) 593, 672
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 7 cut(s) 505, 670, 671, 730, 741, 742, 751
SduI GDGCHC 1 cut(s) 670
SfoI GGCGCC 1 cut(s) 54
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SmaI CCCGGG 2 cut(s) 671, 742
SrfI GCCCGGGC 1 cut(s) 671
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 7 cut(s) 503, 668, 669, 728, 739, 740, 749
StyI CCWWGG 2 cut(s) 339, 598
TaaI ACNGT 2 cut(s) 430, 526
TaiI ACGT 5 cut(s) 45, 174, 195, 498, 519
TaqI TCGA 6 cut(s) 47, 135, 177, 297, 318, 414
TatI WGTACW 1 cut(s) 648
TauI GCSGC 5 cut(s) 58, 237, 446, 449, 677
TfiI GAWTC 2 cut(s) 179, 351
TseFI GTSAC 4 cut(s) 193, 355, 424, 430
TseI GCWGC 4 cut(s) 474, 477, 486, 560
Tsp45I GTSAC 4 cut(s) 193, 355, 424, 430
TspDTI ATGAA 1 cut(s) 707
TspGWI ACGGA 3 cut(s) 41, 262, 363
TspMI CCCGGG 2 cut(s) 669, 740
XagI CCTNNNNNAGG 1 cut(s) 299
XmaI CCCGGG 2 cut(s) 669, 740
XmaJI CCTAGG 1 cut(s) 598
XspI CTAG 1 cut(s) 599
ZraI GACGTC 2 cut(s) 172, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.