Prupe.4G060300_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000611
Physical Location & Seq
Forward (+)
2874115 .. 2878688
4574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G060300.1

Sequence Viewer

Length: 1146 bp
ATGGACTTCACGAAGAAGCGCAAAACTGAGCTGAACGGCACCGTATCACTATCTCCAACTTCCCAATCGAGTTCTCTAACCTCAGAAGACGCCCGCAAGCTCCTTCAACCCTTGACCCAGGACCAGCTCATCGACATCCTCCAAAACGCCGTCGTTCGCCACCCCGACGTCCTCGACTCCGTCCGCTCCGTCACCGACAAAGACTCTACCCTCCGGAAACTCTTCATCCGCGGCCTAGGCGCTGACACCACCTCCGACTCCCTCCGCTCTCTCTTCTCCGCCTTCGGCGACCTCGACGAGGCCATCGTAATTCCCGACAAGGCCACTGGAAAATCCAAAGGCTACGGCTTCGTCACGTTCAAGCACGCCGACTCGGCCCTTCTCGCTCTCAAAGAACCGAGCAAGAAAATCGATGGTAGAGTCACTGTGACGCAATTCGCTGCTGCCGGCTTGACGGCGTCGTTTAGCAACAGCAACTCTAACGCCGCCGATGTCTCCGCCAGGAAGATTTACGTGGGAAGCGTACCGTTTGATATCTCTTCGGAGAGACTGTTGTCGACTTTCTCGGCGTACGGAGAGATTGAGGAAGGACCGCTAGGGTTCGATAAGGCCACCGGAAAATCAAAGGGGTTTGCTTTCTTTGTGTACAAGACTGAGGAGGGTGCCAGGGCTGCACTTGTTGAACCCATAAAGAACATCGACGGTCATCAGGTGGCTTGCAAATTGGCGGTGGACAACAAGAAGAGCAAACCTGGTGGGGCCCAAGCAGCTCCTGTTGATAACTCCGGCGTCCCTCCACCGCAATCTTCGATGCCACCGGGGTTGTATCAGGGCCCGCCGCCGCATCAGCAGGGTCCATATTCTGGTTATCCTGGCGGGCATCAGCCTTTGCCTGGGCTGCCTGGTAATAGTTTCGGTGCTAGGTATAATGCCAATTTGGGAGGTGCATATGGTTTGCCGCCTCCAGGTGAATTCACAGCTCGGTTGCCGCCAAGTTCTATAGGAATGGGGCATGGAGGGTATTCGGATGGTCCGCATTATGGTTTAGGAGCATCCATGGGGCTTCCTTCTCAGCATCAGCAGCCTCCTCCTGTACCTAGAGTCCCGCCTGGTGGACTTTACCAGGGCATGCCACCATACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

382

Amino Acids

40.13

Weight (kDa)

8.68

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 2 cut(s) 38, 662
AccB7I CCANNNNNTGG 1 cut(s) 863
AccBSI CCGCTC 2 cut(s) 186, 267
AccI GTMKAC 1 cut(s) 557
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 213
AcsI RAATTY 1 cut(s) 971
AcyI GRCGYC 4 cut(s) 90, 168, 458, 789
AfaI GTAC 4 cut(s) 525, 572, 647, 1095
AfiI CCNNNNNNNGG 6 cut(s) 298, 863, 893, 965, 1040, 1112
AgsI TTSAA 3 cut(s) 107, 361, 683
AluBI AGCT 5 cut(s) 31, 100, 127, 770, 980
AluI AGCT 5 cut(s) 31, 100, 127, 770, 980
Alw26I GTCTC 2 cut(s) 499, 541
AlwNI CAGNNNCTG 1 cut(s) 773
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 7 cut(s) 232, 300, 321, 375, 609, 759, 832
ApaI GGGCCC 2 cut(s) 763, 836
ApeKI GCWGC 6 cut(s) 440, 443, 671, 767, 898, 1081
ApoI RAATTY 1 cut(s) 971
Asp700I GAANNNNTTC 1 cut(s) 221
AspA2I CCTAGG 1 cut(s) 235
AspLEI GCGC 2 cut(s) 21, 242
AspS9I GGNCC 9 cut(s) 121, 376, 590, 759, 760, 832, 833, 854, 1031
AsuC2I CCSGG 1 cut(s) 819
AsuHPI GGTGA 2 cut(s) 184, 980
AvaII GGWCC 4 cut(s) 121, 590, 854, 1031
AvrII CCTAGG 1 cut(s) 235
BaeGI GKGCMC 2 cut(s) 763, 836
BanI GGYRCC 2 cut(s) 38, 662
BanII GRGCYC 2 cut(s) 763, 836
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 6 cut(s) 427, 430, 658, 779, 885, 1093
BccI CCATC 3 cut(s) 311, 407, 1022
BceAI ACGGC 4 cut(s) 52, 134, 361, 471
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BcnI CCSGG 1 cut(s) 819
BcoDI GTCTC 2 cut(s) 499, 541
BfaI CTAG 4 cut(s) 236, 596, 921, 1098
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 374
BlnI CCTAGG 1 cut(s) 235
Bme18I GGWCC 4 cut(s) 121, 590, 854, 1031
BmgT120I GGNCC 9 cut(s) 121, 376, 590, 759, 760, 832, 833, 854, 1031
BmiI GGNNCC 6 cut(s) 40, 664, 760, 761, 834, 855
BmsI GCATC 5 cut(s) 801, 853, 889, 1061, 1084
BoxI GACNNNNGTC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 948
BpuMI CCSGG 1 cut(s) 819
Bsa29I ATCGAT 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 514
BsaHI GRCGYC 4 cut(s) 90, 168, 458, 789
BsaJI CCNNGG 8 cut(s) 117, 229, 235, 666, 818, 893, 1056, 1123
BsaWI WCCGGW 2 cut(s) 213, 614
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 536, 566
Bsc4I CCNNNNNNNGG 6 cut(s) 298, 863, 893, 965, 1040, 1112
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 331
BseAI TCCGGA 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 8 cut(s) 117, 229, 235, 666, 818, 893, 1056, 1123
BseGI GGATG 4 cut(s) 135, 225, 1033, 1052
BseLI CCNNNNNNNGG 6 cut(s) 298, 863, 893, 965, 1040, 1112
BseMII CTCAG 4 cut(s) 18, 96, 645, 1085
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 671, 1077
BseSI GKGCMC 2 cut(s) 763, 836
BseXI GCAGC 6 cut(s) 427, 430, 658, 779, 885, 1093
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 7 cut(s) 234, 302, 323, 377, 611, 761, 834
BshNI GGYRCC 2 cut(s) 38, 662
BshVI ATCGAT 1 cut(s) 411
BsiSI CCGG 5 cut(s) 214, 447, 615, 786, 818
BsiWI CGTACG 1 cut(s) 570
BslFI GGGAC 2 cut(s) 776, 1088
BslI CCNNNNNNNGG 6 cut(s) 298, 863, 893, 965, 1040, 1112
BsmAI GTCTC 2 cut(s) 499, 541
BsmFI GGGAC 2 cut(s) 776, 1088
BsnI GGCC 7 cut(s) 234, 302, 323, 377, 611, 761, 834
Bsp120I GGGCCC 2 cut(s) 759, 832
Bsp1286I GDGCHC 2 cut(s) 763, 836
Bsp13I TCCGGA 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 645
Bsp19I CCATGG 1 cut(s) 1056
BspANI GGCC 7 cut(s) 234, 302, 323, 377, 611, 761, 834
BspCNI CTCAG 4 cut(s) 19, 95, 646, 1084
BspDI ATCGAT 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 213
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 6 cut(s) 40, 664, 760, 761, 834, 855
BspQI GCTCTTC 1 cut(s) 737
BspT107I GGYRCC 2 cut(s) 38, 662
BsrBI CCGCTC 2 cut(s) 186, 267
BsrFI RCCGGY 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 645
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 8 cut(s) 117, 229, 235, 666, 818, 893, 1056, 1123
BssNI GRCGYC 4 cut(s) 90, 168, 458, 789
BssT1I CCWWGG 2 cut(s) 235, 1056
Bst4CI ACNGT 5 cut(s) 43, 427, 528, 552, 704
Bst6I CTCTTC 4 cut(s) 227, 278, 544, 737
BstACI GRCGYC 4 cut(s) 90, 168, 458, 789
BstAUI TGTACA 1 cut(s) 645
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 8 cut(s) 94, 98, 366, 448, 718, 836, 878, 1130
BstDEI CTNAG 4 cut(s) 27, 82, 654, 1071
BstDSI CCRYGG 2 cut(s) 229, 1056
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 4 cut(s) 135, 225, 1033, 1052
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 21, 242
BstMAI GTCTC 2 cut(s) 499, 541
BstMWI GCNNNNNNNGC 8 cut(s) 237, 374, 383, 671, 767, 847, 898, 1081
BstNSI RCATGY 1 cut(s) 1132
BstPAI GACNNNNGTC 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 2 cut(s) 763, 836
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 6 cut(s) 427, 430, 658, 779, 885, 1093
BstV2I GAAGAC 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 7 cut(s) 234, 302, 323, 377, 611, 761, 834
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 2 cut(s) 229, 1056
BtsCI GGATG 4 cut(s) 135, 225, 1033, 1052
BtsIMutI CAGTG 2 cut(s) 324, 423
Cac8I GCNNGC 8 cut(s) 94, 98, 366, 448, 718, 836, 878, 1130
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 2 cut(s) 21, 242
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 9 cut(s) 121, 376, 590, 759, 760, 832, 833, 854, 1031
Cfr42I CCGCGG 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 4 cut(s) 98, 439, 447, 778
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 4 cut(s) 524, 571, 646, 1094
CspCI CAANNNNNGTGG 4 cut(s) 736, 771, 804, 839
CviAII CATG 3 cut(s) 1013, 1057, 1129
CviQI GTAC 4 cut(s) 524, 571, 646, 1094
DdeI CTNAG 4 cut(s) 27, 82, 654, 1071
Eam1104I CTCTTC 4 cut(s) 227, 278, 544, 737
EarI CTCTTC 4 cut(s) 227, 278, 544, 737
EciI GGCGGA 2 cut(s) 268, 487
Eco130I CCWWGG 2 cut(s) 235, 1056
Eco24I GRGCYC 2 cut(s) 763, 836
Eco32I GATATC 1 cut(s) 535
Eco47I GGWCC 4 cut(s) 121, 590, 854, 1031
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 759, 832
EcoRI GAATTC 1 cut(s) 971
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 2 cut(s) 235, 1056
EcoT38I GRGCYC 2 cut(s) 763, 836
ErhI CCWWGG 2 cut(s) 235, 1056
FaeI CATG 3 cut(s) 1016, 1060, 1132
FaqI GGGAC 2 cut(s) 776, 1088
FatI CATG 3 cut(s) 1012, 1056, 1128
FauI CCCGC 4 cut(s) 101, 843, 869, 1113
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 1 cut(s) 557
FokI GGATG 4 cut(s) 122, 212, 1039, 1040
FriOI GRGCYC 2 cut(s) 763, 836
FspBI CTAG 4 cut(s) 236, 596, 921, 1098
GlaI GCGC 2 cut(s) 20, 241
GsuI CTGGAG 1 cut(s) 948
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 7 cut(s) 234, 302, 323, 377, 611, 761, 834
HapII CCGG 5 cut(s) 214, 447, 615, 786, 818
HgaI GACGC 4 cut(s) 98, 439, 447, 778
HhaI GCGC 2 cut(s) 21, 242
Hin1I GRCGYC 4 cut(s) 90, 168, 458, 789
Hin1II CATG 3 cut(s) 1016, 1060, 1132
Hin6I GCGC 2 cut(s) 19, 240
HinP1I GCGC 2 cut(s) 19, 240
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HinfI GANTC 6 cut(s) 176, 203, 257, 371, 420, 1101
HpaII CCGG 5 cut(s) 214, 447, 615, 786, 818
HphI GGTGA 2 cut(s) 184, 980
Hpy166II GTNNAC 4 cut(s) 558, 646, 733, 1115
Hpy188I TCNGA 4 cut(s) 85, 256, 544, 1027
Hpy188III TCNNGA 3 cut(s) 10, 214, 314
Hpy8I GTNNAC 4 cut(s) 558, 646, 733, 1115
Hpy99I CGWCG 5 cut(s) 155, 170, 299, 463, 704
HpyAV CCTTC 5 cut(s) 113, 292, 389, 581, 1077
HpyCH4III ACNGT 5 cut(s) 43, 427, 528, 552, 704
HpyCH4IV ACGT 3 cut(s) 168, 356, 513
HpyCH4V TGCA 3 cut(s) 674, 720, 947
HpyF10VI GCNNNNNNNGC 8 cut(s) 237, 374, 383, 671, 767, 847, 898, 1081
HpyF3I CTNAG 4 cut(s) 27, 82, 654, 1071
HpySE526I ACGT 3 cut(s) 168, 356, 513
Hsp92I GRCGYC 4 cut(s) 90, 168, 458, 789
Hsp92II CATG 3 cut(s) 1016, 1060, 1132
HspAI GCGC 2 cut(s) 19, 240
Kpn2I TCCGGA 1 cut(s) 213
KroI GCCGGC 1 cut(s) 446
KroNI GCCGGC 1 cut(s) 448
KspI CCGCGG 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 737
LmnI GCTCC 4 cut(s) 105, 191, 775, 1049
Lsp1109I GCAGC 6 cut(s) 427, 430, 658, 779, 885, 1093
LweI GCATC 5 cut(s) 801, 853, 889, 1061, 1084
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 4 cut(s) 236, 596, 921, 1098
MaeII ACGT 3 cut(s) 168, 356, 513
MaeIII GTNAC 4 cut(s) 190, 352, 421, 427
MbiI CCGCTC 2 cut(s) 186, 267
MboII GAAGA 8 cut(s) 25, 98, 214, 265, 517, 531, 754, 798
MhlI GDGCHC 2 cut(s) 763, 836
MluCI AATT 5 cut(s) 309, 434, 722, 934, 971
MlyI GAGTC 6 cut(s) 170, 197, 251, 365, 429, 1110
MmeI TCCRAC 2 cut(s) 80, 279
MroI TCCGGA 1 cut(s) 213
MroNI GCCGGC 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 5 cut(s) 214, 447, 615, 786, 818
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 8 cut(s) 237, 374, 383, 671, 767, 847, 898, 1081
NaeI GCCGGC 1 cut(s) 448
NciI CCSGG 1 cut(s) 819
NcoI CCATGG 1 cut(s) 1056
NdeI CATATG 1 cut(s) 949
NgoMIV GCCGGC 1 cut(s) 446
NlaIII CATG 3 cut(s) 1016, 1060, 1132
NlaIV GGNNCC 6 cut(s) 40, 664, 760, 761, 834, 855
NmeAIII GCCGAG 2 cut(s) 353, 545
NmuCI GTSAC 4 cut(s) 190, 352, 421, 427
NspI RCATGY 1 cut(s) 1132
PaeI GCATGC 1 cut(s) 1132
PciSI GCTCTTC 1 cut(s) 737
PcsI WCGNNNNNNNCGW 4 cut(s) 291, 303, 312, 519
PdiI GCCGGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 221
Pfl23II CGTACG 1 cut(s) 570
PflFI GACNNNGTC 2 cut(s) 179, 457
PflMI CCANNNNNTGG 1 cut(s) 863
PleI GAGTC 6 cut(s) 170, 197, 251, 365, 428, 1109
PpsI GAGTC 6 cut(s) 170, 197, 251, 365, 428, 1109
Ppu21I YACGTR 1 cut(s) 514
PshAI GACNNNNGTC 1 cut(s) 553
PspLI CGTACG 1 cut(s) 570
PspN4I GGNNCC 6 cut(s) 40, 664, 760, 761, 834, 855
PspOMI GGGCCC 2 cut(s) 759, 832
PspPI GGNCC 9 cut(s) 121, 376, 590, 759, 760, 832, 833, 854, 1031
PstNI CAGNNNCTG 1 cut(s) 773
PsyI GACNNNGTC 2 cut(s) 179, 457
RsaI GTAC 4 cut(s) 525, 572, 647, 1095
RsaNI GTAC 4 cut(s) 524, 571, 646, 1094
SacII CCGCGG 1 cut(s) 232
SalI GTCGAC 1 cut(s) 556
SapI GCTCTTC 1 cut(s) 737
Sau96I GGNCC 9 cut(s) 121, 376, 590, 759, 760, 832, 833, 854, 1031
SchI GAGTC 6 cut(s) 170, 197, 251, 365, 429, 1110
SduI GDGCHC 2 cut(s) 763, 836
SexAI ACCWGGT 1 cut(s) 751
SfaNI GCATC 5 cut(s) 801, 853, 889, 1061, 1084
SfcI CTRYAG 1 cut(s) 999
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 4 cut(s) 121, 590, 854, 1031
SphI GCATGC 1 cut(s) 1132
Sse9I AATT 5 cut(s) 309, 434, 722, 934, 971
SspMI CTAG 4 cut(s) 236, 596, 921, 1098
StyI CCWWGG 2 cut(s) 235, 1056
TaaI ACNGT 5 cut(s) 43, 427, 528, 552, 704
TaiI ACGT 3 cut(s) 171, 359, 516
TaqI TCGA 9 cut(s) 68, 132, 174, 294, 411, 557, 603, 699, 809
TasI AATT 5 cut(s) 309, 434, 722, 934, 971
TatI WGTACW 1 cut(s) 645
TauI GCSGC 6 cut(s) 234, 488, 841, 844, 961, 991
TscAI CASTG 2 cut(s) 331, 430
TseFI GTSAC 4 cut(s) 190, 352, 421, 427
TseI GCWGC 6 cut(s) 440, 443, 671, 767, 898, 1081
Tsp45I GTSAC 4 cut(s) 190, 352, 421, 427
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 3 cut(s) 169, 178, 588
TspRI CASTG 2 cut(s) 331, 430
Tth111I GACNNNGTC 2 cut(s) 179, 457
Van91I CCANNNNNTGG 1 cut(s) 863
VpaK11BI GGWCC 4 cut(s) 121, 590, 854, 1031
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 1 cut(s) 971
XceI RCATGY 1 cut(s) 1132
XmaJI CCTAGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 4 cut(s) 236, 596, 921, 1098
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.