Rorug05G0125900

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000611
Physical Location & Seq
Reverse (-)
11184334 .. 11185088
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0125900.1

Sequence Viewer

Length: 651 bp
ATGGCCTTTAAGTTTCTGTTGTTGGCATTCCTTGCCATAAGTGCTTGTTCCATTGCTTTGGCTTCTGACCCAAGTTCTCTTCAGGATTTCTGTGTTGCGGACCCAACAGGCTCAGTACCAGTGAATGGACATGTCTGCAAGGACCCCAAGGTTGTCGAAGCCAATGACTTCTTCTTCAGTGGACTTCACCTAGCAGGCAACACGTCAAACCCTGCTGGTTCAAAGGTGACCCCTGCTAACGTTGCCCAGATTCCAGGACTTAATACTTTTGGTATCTCCCTAGTTCGTATCGACTATGCACCATGGGGTATCAATGCTCCACACACTCATCCTAGAGCTACTGAAATCTTGACAGTCCTTGAAGGGAGCCTCCAAGTGGGTTTTGTCACCTCCAACCCCGAAAACAGGCTTATCACAAAGGTGCTTCAGAAGGGCGATGTGTTTGTGTTCCCAGTAGGACTTGTGCATTTCCAACACAATGTTGGAAATGTTAATGCGGTAGCCATTGCAGCTCTGAGCAGCCAAAATCCAGGTGCTATTACCATTGCCAATGCAGTGTTTGGATCAAAGCTTGCCATTTCTGCTGATGTTCTTGCAAAGGCATTCCAAGCGGACAAGAACACAATCTATGATCTCCAGTCCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009692 GO:0009693 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032496 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070935 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090693 GO:0097159 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902369 GO:1902373 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

216

Amino Acids

22.7

Weight (kDa)

6.57

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 62 - 208 3.5e-51 Cupin
Cupin_2 PF07883 97 - 169 4.2e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 3 cut(s) 98, 497, 611
AclI AACGTT 1 cut(s) 240
AclWI GGATC 1 cut(s) 571
AcuI CTGAAG 3 cut(s) 65, 160, 410
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 3 cut(s) 125, 376, 405
AflIII ACRYGT 2 cut(s) 130, 201
AgsI TTSAA 2 cut(s) 222, 362
AjiI CACGTC 1 cut(s) 204
AjnI CCWGG 2 cut(s) 253, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 3 cut(s) 338, 512, 571
AluI AGCT 3 cut(s) 338, 512, 571
AlwI GGATC 1 cut(s) 571
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 509, 519
AspS9I GGNCC 2 cut(s) 100, 142
AsuHPI GGTGA 3 cut(s) 179, 238, 379
AvaII GGWCC 2 cut(s) 100, 142
BbvI GCAGC 2 cut(s) 521, 531
BciT130I CCWGG 2 cut(s) 255, 531
BfaI CTAG 4 cut(s) 191, 281, 333, 649
BisI GCNGC 2 cut(s) 510, 520
BlsI GCNGC 2 cut(s) 511, 521
Bme1390I CCNGG 2 cut(s) 255, 531
Bme18I GGWCC 2 cut(s) 100, 142
BmgBI CACGTC 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 100, 142
BmiI GGNNCC 3 cut(s) 102, 144, 368
BmrFI CCNGG 2 cut(s) 255, 531
BmrI ACTGGG 1 cut(s) 446
BmuI ACTGGG 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 147, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 376, 405
Bse1I ACTGG 3 cut(s) 119, 452, 637
Bse3DI GCAATG 3 cut(s) 51, 504, 543
BseBI CCWGG 2 cut(s) 255, 531
BseDI CCNNGG 2 cut(s) 147, 302
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 3 cut(s) 125, 376, 405
BseMI GCAATG 3 cut(s) 51, 504, 543
BseMII CTCAG 2 cut(s) 126, 506
BseNI ACTGG 3 cut(s) 119, 452, 637
BseXI GCAGC 2 cut(s) 521, 531
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 3 cut(s) 125, 376, 405
BsmI GAATGC 2 cut(s) 26, 602
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 563, 631
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 3 cut(s) 98, 497, 611
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 125, 507
BspLI GGNNCC 3 cut(s) 102, 144, 368
BspPI GGATC 1 cut(s) 571
BsrDI GCAATG 3 cut(s) 51, 504, 543
BsrI ACTGG 3 cut(s) 119, 452, 637
BssECI CCNNGG 2 cut(s) 147, 302
BssMI GATC 2 cut(s) 563, 631
BssT1I CCWWGG 2 cut(s) 147, 302
Bst2UI CCWGG 2 cut(s) 255, 531
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 196, 573
BstDEI CTNAG 2 cut(s) 112, 515
BstDSI CCRYGG 1 cut(s) 302
BstEII GGTNACC 1 cut(s) 226
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 2 cut(s) 566, 634
BstMBI GATC 2 cut(s) 563, 631
BstMWI GCNNNNNNNGC 6 cut(s) 32, 41, 242, 509, 581, 608
BstNI CCWGG 2 cut(s) 255, 531
BstNSI RCATGY 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 253, 529
BstV1I GCAGC 2 cut(s) 521, 531
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 450
BtrI CACGTC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 3 cut(s) 126, 184, 561
Cac8I GCNNGC 2 cut(s) 196, 573
Cfr13I GGNCC 2 cut(s) 100, 142
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 131, 303
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 112, 515
DpnI GATC 2 cut(s) 565, 633
DpnII GATC 2 cut(s) 563, 631
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 147, 302
Eco47I GGWCC 2 cut(s) 100, 142
Eco57I CTGAAG 3 cut(s) 65, 160, 410
Eco91I GGTNACC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 253, 529
EcoT14I CCWWGG 2 cut(s) 147, 302
ErhI CCWWGG 2 cut(s) 147, 302
FaeI CATG 2 cut(s) 134, 306
FaiI YATR 5 cut(s) 38, 132, 297, 304, 630
FatI CATG 2 cut(s) 130, 302
Fnu4HI GCNGC 2 cut(s) 510, 520
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 510, 520
FspBI CTAG 4 cut(s) 191, 281, 333, 649
GluI GCNGC 2 cut(s) 510, 520
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 134, 306
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 1 cut(s) 250
HphI GGTGA 3 cut(s) 179, 238, 379
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 67, 429, 516
Hpy188III TCNNGA 2 cut(s) 83, 349
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 356, 424
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 203, 240
HpyCH4V TGCA 6 cut(s) 138, 299, 466, 509, 554, 596
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 41, 242, 509, 581, 608
HpyF3I CTNAG 2 cut(s) 112, 515
HpySE526I ACGT 2 cut(s) 203, 240
Hsp92II CATG 2 cut(s) 134, 306
Kzo9I GATC 2 cut(s) 563, 631
LmnI GCTCC 2 cut(s) 322, 366
Lsp1109I GCAGC 2 cut(s) 521, 531
MaeI CTAG 4 cut(s) 191, 281, 333, 649
MaeII ACGT 2 cut(s) 203, 240
MaeIII GTNAC 2 cut(s) 226, 385
MalI GATC 2 cut(s) 565, 633
MboI GATC 2 cut(s) 563, 631
MboII GAAGA 3 cut(s) 71, 163, 166
MmeI TCCRAC 3 cut(s) 417, 463, 496
MnlI CCTC 2 cut(s) 380, 400
MseI TTAA 3 cut(s) 9, 261, 492
MslI CAYNNNNRTG 1 cut(s) 419
MspR9I CCNGG 2 cut(s) 255, 531
Mva1269I GAATGC 2 cut(s) 26, 602
MvaI CCWGG 2 cut(s) 255, 531
MwoI GCNNNNNNNGC 6 cut(s) 32, 41, 242, 509, 581, 608
NcoI CCATGG 1 cut(s) 302
NdeII GATC 2 cut(s) 563, 631
NlaIII CATG 2 cut(s) 134, 306
NlaIV GGNNCC 3 cut(s) 102, 144, 368
NmuCI GTSAC 2 cut(s) 226, 385
NspI RCATGY 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 419
PciI ACATGT 1 cut(s) 130
PctI GAATGC 2 cut(s) 26, 602
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 2 cut(s) 511, 521
PpuMI RGGWCCY 1 cut(s) 142
PscI ACATGT 1 cut(s) 130
Psp1406I AACGTT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 253, 529
PspEI GGTNACC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 253, 529
PspN4I GGNNCC 3 cut(s) 102, 144, 368
PspPI GGNCC 2 cut(s) 100, 142
PspPPI RGGWCCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 3 cut(s) 9, 261, 492
SatI GCNGC 2 cut(s) 510, 520
Sau3AI GATC 2 cut(s) 563, 631
Sau96I GGNCC 2 cut(s) 100, 142
ScrFI CCNGG 2 cut(s) 255, 531
SinI GGWCC 2 cut(s) 100, 142
SmiMI CAYNNNNRTG 1 cut(s) 419
SsiI CCGC 3 cut(s) 98, 497, 611
SspMI CTAG 4 cut(s) 191, 281, 333, 649
StyD4I CCNGG 2 cut(s) 253, 529
StyI CCWWGG 2 cut(s) 147, 302
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 2 cut(s) 206, 243
TaqI TCGA 2 cut(s) 156, 291
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 3 cut(s) 9, 261, 492
Tru9I TTAA 3 cut(s) 9, 261, 492
TscAI CASTG 3 cut(s) 126, 184, 561
TseFI GTSAC 2 cut(s) 226, 385
TseI GCWGC 2 cut(s) 509, 519
Tsp45I GTSAC 2 cut(s) 226, 385
TspRI CASTG 3 cut(s) 126, 184, 561
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 100, 142
XceI RCATGY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XspI CTAG 4 cut(s) 191, 281, 333, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.