Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Forward (+)

15466674 .. 15467642

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0180500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTTATTACGATCCGGATCTTGTCGGACTTGAGCCACTCGCCGCAATTGTACCCACCGGATGTCGACCACAGCGGGATTTTGTACATTGCGACCTCGCGCACCACTAGCAGCTTAAGAATCCTCGTCGTCGCCGCCGCCGCCGCCGCGATCCATCTCCTTCGTCACTATAAGCTCGATCTCCCCGACGATCTCCTTTCCTCCAAACCCTCCGATCAGTCCTGGACCTCCAAAGAGATGGCGATTAGTTTCGCTTTTGTAGCATTATGTGGATCAGAGTATCGTTATGTTTCGTTTAATTGTGAGAGTGGTTGTTTACATGATTTAACGTCGAGACTGTGGAATACAGGAACATCAGCTTCACTTTGTGGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

6.15

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	2 cut(s)	100, 149
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	7 cut(s)	44, 75, 135, 138, 141, 144, 147
AclWI	GGATC	4 cut(s)	7, 26, 145, 280
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	53, 86
AflII	CTTAAG	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	114, 175, 359
AluI	AGCT	3 cut(s)	114, 175, 359
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	4 cut(s)	7, 26, 145, 280
Aor13HI	TCCGGA	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	162, 232
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	115
BisI	GCNGC	7 cut(s)	44, 112, 135, 138, 141, 144, 147
BlsI	GCNGC	7 cut(s)	45, 113, 136, 139, 142, 145, 148
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	17
BsaWI	WCCGGW	2 cut(s)	15, 58
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	67, 378
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	123
Bsh1236I	CGCG	2 cut(s)	100, 149
BsiSI	CCGG	2 cut(s)	16, 59
BsmAI	GTCTC	1 cut(s)	328
Bsp13I	TCCGGA	1 cut(s)	15
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
BspACI	CCGC	7 cut(s)	44, 75, 135, 138, 141, 144, 147
BspEI	TCCGGA	1 cut(s)	15
BspFNI	CGCG	2 cut(s)	100, 149
BspPI	GGATC	4 cut(s)	7, 26, 145, 280
BspTI	CTTAAG	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	84
BssMI	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	115
BstAUI	TGTACA	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	67, 378
BstFNI	CGCG	2 cut(s)	100, 149
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	7 cut(s)	15, 21, 153, 181, 193, 217, 275
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 140, 143, 146, 260
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	2 cut(s)	100, 149
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	67, 378
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	52, 85
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	4 cut(s)	36, 114, 175, 359
CviKI_1	RGCY	4 cut(s)	36, 114, 175, 359
CviQI	GTAC	2 cut(s)	52, 85
DpnI	GATC	7 cut(s)	14, 20, 152, 180, 192, 216, 274
DpnII	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
DraIII	CACNNNGTG	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	221
FaeI	CATG	1 cut(s)	323
FaiI	YATR	4 cut(s)	171, 268, 288, 321
FatI	CATG	1 cut(s)	319
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	7 cut(s)	44, 112, 135, 138, 141, 144, 147
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	7 cut(s)	44, 112, 135, 138, 141, 144, 147
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	7 cut(s)	44, 112, 135, 138, 141, 144, 147
HapII	CCGG	2 cut(s)	16, 59
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	16, 59
Hpy166II	GTNNAC	2 cut(s)	67, 317
Hpy188I	TCNGA	3 cut(s)	28, 214, 277
Hpy188III	TCNNGA	2 cut(s)	16, 333
Hpy8I	GTNNAC	2 cut(s)	67, 317
Hpy99I	CGWCG	4 cut(s)	131, 134, 191, 334
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 140, 143, 146, 260
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	100
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
LpnPI	CCDG	5 cut(s)	29, 72, 208, 235, 333
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	7 cut(s)	14, 20, 152, 180, 192, 216, 274
MboI	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	2 cut(s)	47, 298
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	106, 134, 211, 220, 238
MroI	TCCGGA	1 cut(s)	15
MseI	TTAA	3 cut(s)	116, 297, 326
MspA1I	CMGCKG	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	2 cut(s)	16, 59
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	2 cut(s)	100, 149
MwoI	GCNNNNNNNGC	5 cut(s)	108, 140, 143, 146, 260
NdeII	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
NlaIII	CATG	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	120
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	7 cut(s)	45, 113, 136, 139, 142, 145, 148
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	2 cut(s)	53, 86
RsaNI	GTAC	2 cut(s)	52, 85
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	116, 297, 326
SatI	GCNGC	7 cut(s)	44, 112, 135, 138, 141, 144, 147
Sau3AI	GATC	7 cut(s)	12, 18, 150, 178, 190, 214, 272
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	6 cut(s)	98, 116, 177, 230, 332, 361
SinI	GGWCC	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	31, 115
SmoI	CTYRAG	2 cut(s)	31, 115
Sse9I	AATT	2 cut(s)	47, 298
SsiI	CCGC	7 cut(s)	44, 75, 135, 138, 141, 144, 147
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	3 cut(s)	66, 177, 332
TasI	AATT	2 cut(s)	47, 298
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	6 cut(s)	46, 137, 140, 143, 146, 149
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	116, 297, 326
Tru9I	TTAA	3 cut(s)	116, 297, 326
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	164
Vha464I	CTTAAG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.