Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

59667282 .. 59667677

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG422300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCCCACTACCACCTAGTCGAAGTCCTCGAAAAAGCCTTCGTTGGCTACCCGGACGTCCTCGAATCCCTCCGCCACTTCACCAACCATGACCTCACCCTTCGCAAGCTTTTTGTCAGCAGCCTTGGCCCGACACCACCACTGATTCGCTCCGCTTCATCTTCTCCGCCTTCGGCTACCACCACGAGGCCATCGTCATCTTCGACAAGGCCACCAGAAAATCCAAAGCCACGGATTCATCACCTTCGCACTCCGATAAAGCCATCATCGATTCCTCCGCCACCACGCCTCTCCAGGCCGTCAAGCTCCTCGCCCTCTAACTCTCTGGCCCCGATTACAAGGTTTGTCATTGTTCTTGTCTCCGCAATGCTCATTGTCCTAGATCTAGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

131

Amino Acids

14.32

Weight (kDa)

10.88

Isoelectric Point (pI)

67.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AciI	CCGC	5 cut(s)	73, 153, 167, 278, 363
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	109, 306
AluI	AGCT	2 cut(s)	109, 306
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	5 cut(s)	127, 188, 209, 296, 327
ApeKI	GCWGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	128, 328
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	73, 88, 233
BauI	CACGAG	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	2 cut(s)	199, 271
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	3 cut(s)	17, 380, 386
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	53, 295
BmgT120I	GGNCC	2 cut(s)	128, 328
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	53, 295
BpmI	CTGGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	124, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	124, 230
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	132
BshFI	GGCC	5 cut(s)	129, 190, 211, 298, 329
BshVI	ATCGAT	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	5 cut(s)	129, 190, 211, 298, 329
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	5 cut(s)	73, 153, 167, 278, 363
BspANI	GGCC	5 cut(s)	129, 190, 211, 298, 329
BspDI	ATCGAT	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	124, 230
BssMI	GATC	1 cut(s)	382
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	51, 293
BstV1I	GCAGC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	269
BsuRI	GGCC	5 cut(s)	129, 190, 211, 298, 329
BsuTUI	ATCGAT	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	128, 328
ClaI	ATCGAT	1 cut(s)	269
CviAII	CATG	1 cut(s)	89
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EciI	GGCGGA	3 cut(s)	62, 156, 267
Eco130I	CCWWGG	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	92
FaiI	YATR	1 cut(s)	90
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	3 cut(s)	17, 380, 386
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	5 cut(s)	129, 190, 211, 298, 329
HapII	CCGG	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	4 cut(s)	65, 145, 235, 271
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	73, 88, 233
Hpy188I	TCNGA	1 cut(s)	255
HpyAV	CCTTC	4 cut(s)	49, 110, 180, 254
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	155, 311
LpnPI	CCDG	5 cut(s)	66, 228, 280, 307, 311
Lsp1109I	GCAGC	1 cut(s)	132
MaeI	CTAG	3 cut(s)	17, 380, 386
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	2 cut(s)	153, 192
MflI	RGATCY	1 cut(s)	382
MnlI	CCTC	9 cut(s)	38, 71, 80, 104, 180, 285, 299, 319, 325
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	53, 295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 191, 200
PfeI	GAWTC	4 cut(s)	65, 145, 235, 271
PkrI	GCNGC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	128, 328
PsuI	RGATCY	1 cut(s)	382
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	2 cut(s)	128, 328
ScrFI	CCNGG	2 cut(s)	53, 295
SetI	ASST	8 cut(s)	18, 60, 96, 111, 246, 308, 344, 391
SsiI	CCGC	5 cut(s)	73, 153, 167, 278, 363
SspMI	CTAG	3 cut(s)	17, 380, 386
StyD4I	CCNGG	2 cut(s)	51, 293
StyI	CCWWGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	5 cut(s)	21, 30, 63, 203, 269
TfiI	GAWTC	4 cut(s)	65, 145, 235, 271
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	147, 227
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	147
XspI	CTAG	3 cut(s)	17, 380, 386
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.