Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003684.1

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Forward (+)

15005 .. 16441

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003684.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggctgtttgtaatttagcatgtgaggggttaactggttcaagttctagccaagatcttacccagaggaaactctacattgggggcttatcaccaaatgtcactagtgagatgctcctccacttctttggcaggcacggtgatatagaagaaggttcagttgcatatgacaaggacacaaatgagtcacgtgggtttggctttgtaacattcaagacagtggaggctgcaaagaaggccatagatgatccacaaaagacccttggggggaggaatgtcattgtgaaacttgctgattcccacaaaggcagaacaattcaaacacagttaccgacaccaatgtttcaaatgccgttacctttagcacctggatatgcacaacctggaaaagcccatccaagtgccgcccctcatggctatggttacccaccagctttgggaccataccatgataatacttattcaagtcctcccacagctccatacccaacacagtcacaaattccgtatccatattacattggcaaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

177

Amino Acids

19.13

Weight (kDa)

7.78

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	501
AcvI	CACGTG	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	267, 437
AgsI	TTSAA	5 cut(s)	42, 214, 320, 347, 465
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	367, 382
AluBI	AGCT	2 cut(s)	434, 479
AluI	AGCT	2 cut(s)	434, 479
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	84, 152
AvaII	GGWCC	1 cut(s)	440
BbrPI	CACGTG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	369, 384
BciVI	GTATCC	1 cut(s)	519
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	2 cut(s)	48, 105
BfuI	GTATCC	1 cut(s)	519
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	2 cut(s)	228, 405
BlsI	GCNGC	2 cut(s)	229, 406
Bme1390I	CCNGG	2 cut(s)	369, 384
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	369, 384
BmsI	GCATC	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 437
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	369, 384
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	267, 437
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	2 cut(s)	267, 437
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	55, 247
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	55, 247
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	369, 384
Bst4CI	ACNGT	4 cut(s)	140, 220, 327, 495
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	134
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	58, 250
BstMBI	GATC	2 cut(s)	55, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	369, 384
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	367, 382
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	440
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	3 cut(s)	21, 413, 449
DpnI	GATC	2 cut(s)	57, 249
DpnII	GATC	2 cut(s)	55, 247
Eco130I	CCWWGG	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	440
Eco72I	CACGTG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	422
EcoO65I	GGTNACC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	367, 382
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	3 cut(s)	24, 416, 452
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	3 cut(s)	20, 412, 448
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	228, 405
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	228, 405
FspBI	CTAG	2 cut(s)	48, 105
GluI	GCNGC	2 cut(s)	228, 405
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	24, 416, 452
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	185, 296
HpaI	GTTAAC	1 cut(s)	33
HphI	GGTGA	2 cut(s)	84, 152
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	146, 229
HpyCH4III	ACNGT	4 cut(s)	140, 220, 327, 495
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	164, 230, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	3 cut(s)	24, 416, 452
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	55, 247
LmnI	GCTCC	2 cut(s)	120, 484
LpnPI	CCDG	8 cut(s)	21, 77, 118, 354, 369, 381, 396, 444
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	48, 105
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	7 cut(s)	100, 186, 205, 327, 354, 422, 495
MalI	GATC	2 cut(s)	57, 249
MboI	GATC	2 cut(s)	55, 247
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	3 cut(s)	13, 315, 501
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	7 cut(s)	19, 60, 128, 217, 264, 420, 480
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	2 cut(s)	399, 417
MspR9I	CCNGG	2 cut(s)	369, 384
MvaI	CCWGG	2 cut(s)	369, 384
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	55, 247
NlaIII	CATG	3 cut(s)	24, 416, 452
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	3 cut(s)	100, 186, 495
NspI	RCATGY	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	229, 406
PleI	GAGTC	1 cut(s)	193
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	367, 382
PspCI	CACGTG	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	367, 382
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	399, 417
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	228, 405
Sau3AI	GATC	2 cut(s)	55, 247
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	369, 384
SetI	ASST	7 cut(s)	157, 193, 361, 370, 385, 436, 481
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	2 cut(s)	399, 417
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	3 cut(s)	13, 315, 501
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	2 cut(s)	48, 105
StyD4I	CCNGG	2 cut(s)	367, 382
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	4 cut(s)	140, 220, 327, 495
TaiI	ACGT	1 cut(s)	193
TasI	AATT	3 cut(s)	13, 315, 501
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	3 cut(s)	100, 186, 495
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	3 cut(s)	100, 186, 495
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	501
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	48, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.