MD05G1314900.v1.1

CBS domain-containing protein CBSX5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0016282
Physical Location & Seq
Reverse (-)
44469387 .. 44470663
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1314900.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGGCACCGCTTCTGCTTTCGCAAGAAGCGTCCGATCTCTGCCTCGGAAAGCCTCCGCTAAAGTCCGTGTCGATCTCCGCCACCGTCGCGGAGGCATTGTCGGCTCTAAAGCGGCTCGGCGAGAGCAGCCTCAGCGTGTGGAGCTGCGACCACTCCTCAGAAAAAAGCAACGTTAACGTCATCGGCAGTTCCGACCCCACGGAGGACTGCCGATGCGTAGGAAAGGTTTGCATGGGGGACGTTATATGCTTCTTGGGGAAAGAAGAGAGCTTGTCGTCTCCGGCGAGAGCGCTCGATGCTCCGCTGGAGCTTTTGATTCCGAAAGGATCTGGCCTTGTTAGGCATTTGGAACCACACGCTAGCTTGGTGGAGGCCATTGATCTCGTTTTAGAAGGTGCACAAAACCTTGTGATTCCGATTCAAAGCCGCCGGACCACAGCCGCAAGAAAAAAGCTCCTACCCAACCGCTCCTTCAACACCCTCCACAACAACCGTGAATACTGCTGGCTCACACAGGAAGACATCATCCGCCACCTCCTCAACTACATAGGGCTCTTCAGTCCCACCTCAAACGCCCCTATCAACTCCCTCCATGCCATCGACACCGTAAACATCCTAGCCGTTCATTACGACGACCCTGCCTCGGCCTCATTGCCCCTCATCTCTCAATCCCTCGCCCAGCAAACTTCGGTTGCCATTCTTGACATGGACGGCAGGGTGATCGGGGAGATCTCCCCGTACACCCTCAACACCTGCCAAGAGTCCGTGGCAGCTGCCATTGCCACGCTTTCCGCAGGTGACCTCATGGCGTACATTGACCGCGGTGGTCCGCCAGATGAGCTGGTACAGTTGGTGAAAGAGAGATTGGAGGAGAAGAAATACGGGGCGTTCTTGGAGCTAATGGAAGAAGAGTCAACAATGTCAATGTCGTCGTCTTCTTCTATCTGTTCAACGTCTTCGGATGAAGAGTTTGGGTGGGGAAGGAGGTCCGGGGGTGGGTATTCGGCACGATTAGTTAGGAGGTCGGAGGCAATTGTGTGCTATCCATGGAGCTCCTTGGTGGCGGTGATGGTTCAGGCGCTTTCGCATCGCGTGAGTTACGTGTGGGTTGTAGAAGAGGATGCAACTTTGTCCGGCATTGTAACCTTTGCAAGCATGTTCAAAGTTTTTCGGGAACGTTTGAGGTCTATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

399

Amino Acids

43.28

Weight (kDa)

5.19

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04900
malus_domestica MD05G1314900.v1.1 MD10G1296300.v1.1
prunus_persica Prupe.4G044300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0008061
rosa_laevigata RLG00000031532
rosa_multiflora Rmu_sc0001626.1_g000001 Rmu_sc0017465.1_g000002
rosa_roxburghii Rroxscaffold_1G00068420
rosa_rugosa Rorug04G0433100
rosa_samantha Rh5AG061100 Rh5BG057900 Rh5CG068000 Rh5DG057100
rosa_wichuraiana Rw5G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 761, 785
Acc36I ACCTGC 2 cut(s) 761, 785
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 468
AccII CGCG 3 cut(s) 89, 822, 1092
AclI AACGTT 2 cut(s) 171, 1177
AclWI GGATC 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 541
AfaI GTAC 3 cut(s) 740, 812, 846
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 3 cut(s) 202, 643, 996
AflIII ACRYGT 1 cut(s) 1101
AgsI TTSAA 4 cut(s) 422, 475, 951, 1162
AjuI GAANNNNNNNTTGG 4 cut(s) 455, 487, 848, 880
AluBI AGCT 9 cut(s) 144, 270, 310, 363, 454, 773, 841, 898, 1053
AluI AGCT 9 cut(s) 144, 270, 310, 363, 454, 773, 841, 898, 1053
Alw21I GWGCWC 2 cut(s) 400, 1055
Alw26I GTCTC 1 cut(s) 282
Alw44I GTGCAC 1 cut(s) 396
AlwI GGATC 1 cut(s) 334
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 3 cut(s) 331, 372, 645
ApaLI GTGCAC 1 cut(s) 396
ApeKI GCWGC 4 cut(s) 126, 144, 770, 773
AspLEI GCGC 2 cut(s) 292, 1081
AspS9I GGNCC 3 cut(s) 432, 827, 987
AsuC2I CCSGG 1 cut(s) 991
AsuHPI GGTGA 4 cut(s) 730, 809, 865, 1078
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 3 cut(s) 432, 827, 987
BaeGI GKGCMC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 555, 1055
BbsI GAAGAC 3 cut(s) 525, 927, 948
Bbv12I GWGCWC 2 cut(s) 400, 1055
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 4 cut(s) 131, 138, 760, 782
BccI CCATC 2 cut(s) 605, 1063
BceAI ACGGC 2 cut(s) 605, 727
BcgI CGANNNNNNTGC 4 cut(s) 620, 654, 703, 737
BcnI CCSGG 1 cut(s) 991
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 360, 617
BfoI RGCGCY 2 cut(s) 293, 1082
BfuAI ACCTGC 2 cut(s) 761, 785
BglII AGATCT 1 cut(s) 729
BisI GCNGC 7 cut(s) 113, 127, 145, 427, 441, 771, 774
BlsI GCNGC 7 cut(s) 114, 128, 146, 428, 442, 772, 775
Bme1390I CCNGG 1 cut(s) 991
Bme18I GGWCC 3 cut(s) 432, 827, 987
BmgT120I GGNCC 3 cut(s) 432, 827, 987
BmiI GGNNCC 2 cut(s) 6, 351
BmrFI CCNGG 1 cut(s) 991
BmsI GCATC 4 cut(s) 203, 286, 1096, 1111
BmtI GCTAGC 1 cut(s) 363
BpiI GAAGAC 3 cut(s) 525, 927, 948
BpmI CTGGAG 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 991
BsaAI YACGTR 1 cut(s) 1102
BsaJI CCNNGG 8 cut(s) 43, 198, 642, 765, 820, 990, 1046, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 643, 996
Bse3DI GCAATG 2 cut(s) 650, 777
BseDI CCNNGG 8 cut(s) 43, 198, 642, 765, 820, 990, 1046, 1056
BseGI GGATG 4 cut(s) 525, 612, 967, 1126
BseLI CCNNNNNNNGG 3 cut(s) 202, 643, 996
BseMI GCAATG 2 cut(s) 650, 777
BseMII CTCAG 2 cut(s) 145, 171
BseRI GAGGAG 3 cut(s) 145, 527, 884
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 4 cut(s) 131, 138, 760, 782
BseYI CCCAGC 1 cut(s) 678
Bsh1236I CGCG 3 cut(s) 89, 822, 1092
BshFI GGCC 3 cut(s) 333, 374, 647
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 400, 1055
BsiSI CCGG 4 cut(s) 281, 430, 990, 1134
BslFI GGGAC 2 cut(s) 251, 546
BslI CCNNNNNNNGG 3 cut(s) 202, 643, 996
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 251, 546
BsnI GGCC 3 cut(s) 333, 374, 647
Bsp1286I GDGCHC 3 cut(s) 400, 555, 1055
Bsp143I GATC 6 cut(s) 34, 72, 326, 379, 720, 729
Bsp19I CCATGG 1 cut(s) 1046
BspANI GGCC 3 cut(s) 333, 374, 647
BspCNI CTCAG 2 cut(s) 144, 170
BspFNI CGCG 3 cut(s) 89, 822, 1092
BspLI GGNNCC 2 cut(s) 6, 351
BspMI ACCTGC 2 cut(s) 761, 785
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 468
BsrDI GCAATG 2 cut(s) 650, 777
BssECI CCNNGG 8 cut(s) 43, 198, 642, 765, 820, 990, 1046, 1056
BssMI GATC 6 cut(s) 34, 72, 326, 379, 720, 729
BssT1I CCWWGG 2 cut(s) 1046, 1056
Bst4CI ACNGT 4 cut(s) 85, 494, 607, 849
Bst6I CTCTTC 5 cut(s) 258, 560, 903, 960, 1110
BstBAI YACGTR 1 cut(s) 1102
BstC8I GCNNGC 3 cut(s) 361, 506, 1153
BstDEI CTNAG 2 cut(s) 131, 157
BstDSI CCRYGG 4 cut(s) 198, 765, 820, 1046
BstEII GGTNACC 1 cut(s) 797
BstF5I GGATG 4 cut(s) 525, 612, 967, 1126
BstFNI CGCG 3 cut(s) 89, 822, 1092
BstH2I RGCGCY 2 cut(s) 293, 1082
BstHHI GCGC 2 cut(s) 292, 1081
BstKTI GATC 6 cut(s) 37, 75, 329, 382, 723, 732
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 6 cut(s) 34, 72, 326, 379, 720, 729
BstMWI GCNNNNNNNGC 8 cut(s) 86, 101, 126, 132, 141, 296, 779, 838
BstNSI RCATGY 1 cut(s) 1159
BstPI GGTNACC 1 cut(s) 797
BstSCI CCNGG 1 cut(s) 989
BstSLI GKGCMC 1 cut(s) 400
BstUI CGCG 3 cut(s) 89, 822, 1092
BstV1I GCAGC 4 cut(s) 131, 138, 760, 782
BstV2I GAAGAC 3 cut(s) 525, 927, 948
BstX2I RGATCY 2 cut(s) 326, 729
BstYI RGATCY 2 cut(s) 326, 729
BsuRI GGCC 3 cut(s) 333, 374, 647
BtgI CCRYGG 4 cut(s) 198, 765, 820, 1046
BtgZI GCGATG 1 cut(s) 1073
BtsCI GGATG 4 cut(s) 525, 612, 967, 1126
BveI ACCTGC 2 cut(s) 761, 785
Cac8I GCNNGC 3 cut(s) 361, 506, 1153
CfoI GCGC 2 cut(s) 292, 1081
Cfr13I GGNCC 3 cut(s) 432, 827, 987
Cfr42I CCGCGG 1 cut(s) 823
CseI GACGC 1 cut(s) 18
Csp6I GTAC 3 cut(s) 739, 811, 845
CviAII CATG 6 cut(s) 232, 593, 706, 805, 1047, 1156
CviQI GTAC 3 cut(s) 739, 811, 845
DdeI CTNAG 2 cut(s) 131, 157
DpnI GATC 6 cut(s) 36, 74, 328, 381, 722, 731
DpnII GATC 6 cut(s) 34, 72, 326, 379, 720, 729
Eam1104I CTCTTC 5 cut(s) 258, 560, 903, 960, 1110
EarI CTCTTC 5 cut(s) 258, 560, 903, 960, 1110
EciI GGCGGA 3 cut(s) 67, 518, 819
Ecl136II GAGCTC 1 cut(s) 1053
Eco130I CCWWGG 2 cut(s) 1046, 1056
Eco24I GRGCYC 2 cut(s) 555, 1055
Eco47I GGWCC 3 cut(s) 432, 827, 987
Eco47III AGCGCT 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 1053
Eco57I CTGAAG 1 cut(s) 541
Eco91I GGTNACC 1 cut(s) 797
EcoICRI GAGCTC 1 cut(s) 1053
EcoO65I GGTNACC 1 cut(s) 797
EcoT14I CCWWGG 2 cut(s) 1046, 1056
EcoT38I GRGCYC 2 cut(s) 555, 1055
ErhI CCWWGG 2 cut(s) 1046, 1056
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 6 cut(s) 235, 596, 709, 808, 1050, 1159
FaqI GGGAC 2 cut(s) 251, 546
FatI CATG 6 cut(s) 231, 592, 705, 804, 1046, 1155
Fnu4HI GCNGC 7 cut(s) 113, 127, 145, 427, 441, 771, 774
FokI GGATG 4 cut(s) 512, 599, 974, 1133
FriOI GRGCYC 2 cut(s) 555, 1055
Fsp4HI GCNGC 7 cut(s) 113, 127, 145, 427, 441, 771, 774
FspBI CTAG 2 cut(s) 360, 617
GlaI GCGC 2 cut(s) 291, 1080
GluI GCNGC 7 cut(s) 113, 127, 145, 427, 441, 771, 774
GsaI CCCAGC 1 cut(s) 682
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 2 cut(s) 293, 1082
HaeIII GGCC 3 cut(s) 333, 374, 647
HapII CCGG 4 cut(s) 281, 430, 990, 1134
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 292, 1081
Hin1II CATG 6 cut(s) 235, 596, 709, 808, 1050, 1159
Hin6I GCGC 2 cut(s) 290, 1079
HinP1I GCGC 2 cut(s) 290, 1079
HincII GTYRAC 2 cut(s) 175, 915
HindII GTYRAC 2 cut(s) 175, 915
HinfI GANTC 5 cut(s) 316, 412, 418, 761, 911
HpaI GTTAAC 1 cut(s) 175
HpaII CCGG 4 cut(s) 281, 430, 990, 1134
HphI GGTGA 4 cut(s) 730, 809, 865, 1078
Hpy166II GTNNAC 5 cut(s) 175, 398, 610, 741, 915
Hpy188I TCNGA 8 cut(s) 34, 47, 160, 193, 321, 417, 961, 1027
Hpy188III TCNNGA 2 cut(s) 701, 1172
Hpy8I GTNNAC 5 cut(s) 175, 398, 610, 741, 915
Hpy99I CGWCG 3 cut(s) 89, 635, 934
HpyAV CCTTC 3 cut(s) 386, 481, 975
HpyCH4III ACNGT 4 cut(s) 85, 494, 607, 849
HpyCH4IV ACGT 6 cut(s) 171, 177, 240, 953, 1101, 1177
HpyCH4V TGCA 4 cut(s) 231, 398, 1124, 1151
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 101, 126, 132, 141, 296, 779, 838
HpyF3I CTNAG 2 cut(s) 131, 157
HpySE526I ACGT 6 cut(s) 171, 177, 240, 953, 1101, 1177
Hsp92II CATG 6 cut(s) 235, 596, 709, 808, 1050, 1159
HspAI GCGC 2 cut(s) 290, 1079
KspAI GTTAAC 1 cut(s) 175
KspI CCGCGG 1 cut(s) 823
Kzo9I GATC 6 cut(s) 34, 72, 326, 379, 720, 729
LguI GCTCTTC 1 cut(s) 560
LmnI GCTCC 8 cut(s) 141, 304, 307, 459, 473, 895, 1050, 1058
Lsp1109I GCAGC 4 cut(s) 131, 138, 760, 782
LweI GCATC 4 cut(s) 203, 286, 1096, 1111
MaeI CTAG 2 cut(s) 360, 617
MaeII ACGT 6 cut(s) 171, 177, 240, 953, 1101, 1177
MaeIII GTNAC 3 cut(s) 797, 1097, 1141
MalI GATC 6 cut(s) 36, 74, 328, 381, 722, 731
MbiI CCGCTC 1 cut(s) 468
MboI GATC 6 cut(s) 34, 72, 326, 379, 720, 729
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 2 cut(s) 326, 729
MhlI GDGCHC 3 cut(s) 400, 555, 1055
MluCI AATT 1 cut(s) 1032
MlyI GAGTC 2 cut(s) 770, 920
MmeI TCCRAC 2 cut(s) 216, 1005
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 3 cut(s) 304, 773, 822
MspI CCGG 4 cut(s) 281, 430, 990, 1134
MspR9I CCNGG 1 cut(s) 991
MunI CAATTG 1 cut(s) 1032
MvnI CGCG 3 cut(s) 89, 822, 1092
MwoI GCNNNNNNNGC 8 cut(s) 86, 101, 126, 132, 141, 296, 779, 838
NciI CCSGG 1 cut(s) 991
NcoI CCATGG 1 cut(s) 1046
NdeII GATC 6 cut(s) 34, 72, 326, 379, 720, 729
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 6 cut(s) 235, 596, 709, 808, 1050, 1159
NlaIV GGNNCC 2 cut(s) 6, 351
NmeAIII GCCGAG 2 cut(s) 96, 623
NmuCI GTSAC 1 cut(s) 797
NspI RCATGY 1 cut(s) 1159
PaqCI CACCTGC 2 cut(s) 761, 785
PciSI GCTCTTC 1 cut(s) 560
PcsI WCGNNNNNNNCGW 3 cut(s) 26, 189, 281
PfeI GAWTC 3 cut(s) 316, 412, 418
PkrI GCNGC 7 cut(s) 114, 128, 146, 428, 442, 772, 775
PleI GAGTC 2 cut(s) 769, 919
PpsI GAGTC 2 cut(s) 769, 919
Ppu21I YACGTR 1 cut(s) 1102
Psp124BI GAGCTC 1 cut(s) 1055
Psp1406I AACGTT 2 cut(s) 171, 1177
PspEI GGTNACC 1 cut(s) 797
PspFI CCCAGC 1 cut(s) 678
PspN4I GGNNCC 2 cut(s) 6, 351
PspPI GGNCC 3 cut(s) 432, 827, 987
PsuI RGATCY 2 cut(s) 326, 729
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 3 cut(s) 740, 812, 846
RsaNI GTAC 3 cut(s) 739, 811, 845
SacI GAGCTC 1 cut(s) 1055
SacII CCGCGG 1 cut(s) 823
SapI GCTCTTC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 7 cut(s) 113, 127, 145, 427, 441, 771, 774
Sau3AI GATC 6 cut(s) 34, 72, 326, 379, 720, 729
Sau96I GGNCC 3 cut(s) 432, 827, 987
SchI GAGTC 2 cut(s) 770, 920
ScrFI CCNGG 1 cut(s) 991
SduI GDGCHC 3 cut(s) 400, 555, 1055
SfaNI GCATC 4 cut(s) 203, 286, 1096, 1111
Sfr303I CCGCGG 1 cut(s) 823
SgrBI CCGCGG 1 cut(s) 823
SinI GGWCC 3 cut(s) 432, 827, 987
Sse9I AATT 1 cut(s) 1032
SspMI CTAG 2 cut(s) 360, 617
SstI GAGCTC 1 cut(s) 1055
StyD4I CCNGG 1 cut(s) 989
StyI CCWWGG 2 cut(s) 1046, 1056
TaaI ACNGT 4 cut(s) 85, 494, 607, 849
TaiI ACGT 6 cut(s) 174, 180, 243, 956, 1104, 1180
TaqI TCGA 3 cut(s) 71, 294, 600
TasI AATT 1 cut(s) 1032
TauI GCSGC 3 cut(s) 115, 429, 443
TfiI GAWTC 3 cut(s) 316, 412, 418
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 4 cut(s) 126, 144, 770, 773
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 2 cut(s) 614, 978
TspGWI ACGGA 3 cut(s) 55, 215, 754
VneI GTGCAC 1 cut(s) 396
VpaK11BI GGWCC 3 cut(s) 432, 827, 987
XceI RCATGY 1 cut(s) 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XspI CTAG 2 cut(s) 360, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.