Rmu_sc0001626.1_g000001

CBS domain-containing protein CBSX5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001626.1
OG0016282
Physical Location & Seq
Forward (+)
1 .. 3358
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001626.1_g000001.1.cds

Sequence Viewer

Length: 1218 bp
ctgagtttgtctgtagttttttttatgtcaccaactcggaatttgttttcgcatgaggtcgcggatctgtgcatcgggaagccggcgctgaagtcgctgtcggtcgccgccacggtaggcgaggcattgtcggcgctgaagaggctcggcgagaccttcctcagcgtgtggagctgcaaccattccgagaagaacgacgtcgttgcggaggacgagtgccggtgcgtcgggaaggtttgcatgctcgatgtgatcgtttatttggggaaagaagagaacctgtcgtctccggccaaagcgctcgaggctccgatcgaggttttgattcgcagggaacctgcgatctgccttgttaggcatttggaaccacacgccagcttggtggaggctatagatttgattctggaaggtgcacagaatcttgtgataccactcgaaagcaggaggaacacaggctcgagaaaaaagcttctccacactaactccttcaacctgactctccacaacaacagggaatactgctggctcacccaagaagatgttatccgctacctactgaactcgattggtgtctttagccacgtatcaaacaaccccatcaacaccctccagatcattgactcgaaaaacatgcttgcggtccattatgatgaccctgcctcagcggcattacccctcatttctcagtccctagttcagcaaacttcggttgctattcttgatggggaaggcagggtgatcggggagatctcgccttataccctcaacacctgccacgagtctgtggcagctgccattgcgacactttctgctggggaactgatggcgtacattgactgtggtggtccaacggatgacctagtgcagatggtgaaagacaggttgcaggagaagaagtatgaggggttcttggagttgatggaagaagacttcacattgtcgtcttcttcttccatctgttcaacttcttcggacgaagagtttggccagggaaggagttggaggttaggcgggtactcagcaaggctggtgaggaggtcagaggcgattgtgtgctatccatggagctcattggtggcagtgatggttcaggctctttctcatcgtgtgagttatgtgtgggttgctgatgaggatgaaactttgtctggtattatcacctttgcaagcatgttcaaagttttccgggaccgtttgaggttcatgggatacgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

405

Amino Acids

44.77

Weight (kDa)

5.24

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04900
malus_domestica MD05G1314900.v1.1 MD10G1296300.v1.1
prunus_persica Prupe.4G044300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0008061
rosa_laevigata RLG00000031532
rosa_multiflora Rmu_sc0001626.1_g000001 Rmu_sc0017465.1_g000002
rosa_roxburghii Rroxscaffold_1G00068420
rosa_rugosa Rorug04G0433100
rosa_samantha Rh5AG061100 Rh5BG057900 Rh5CG068000 Rh5DG057100
rosa_wichuraiana Rw5G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 779
AatII GACGTC 1 cut(s) 201
Acc36I ACCTGC 2 cut(s) 346, 779
AccII CGCG 1 cut(s) 62
AciI CCGC 7 cut(s) 62, 108, 206, 547, 638, 665, 1011
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 2 cut(s) 291, 985
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 110, 158
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 830, 1016
AfeI AGCGCT 1 cut(s) 300
AgsI TTSAA 3 cut(s) 490, 963, 1177
AjnI CCWGG 1 cut(s) 987
AluBI AGCT 5 cut(s) 174, 378, 469, 791, 1068
AluI AGCT 5 cut(s) 174, 378, 469, 791, 1068
Alw21I GWGCWC 2 cut(s) 415, 1070
Alw26I GTCTC 2 cut(s) 146, 291
Alw44I GTGCAC 1 cut(s) 411
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 2 cut(s) 302, 457
Aor51HI AGCGCT 1 cut(s) 300
AoxI GGCC 2 cut(s) 291, 985
ApaLI GTGCAC 1 cut(s) 411
ApeKI GCWGC 3 cut(s) 174, 788, 791
ApoI RAATTY 1 cut(s) 40
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
AspLEI GCGC 3 cut(s) 88, 136, 301
AspS9I GGNCC 3 cut(s) 640, 845, 1189
AsuC2I CCSGG 1 cut(s) 1187
AsuHPI GGTGA 6 cut(s) 21, 520, 748, 883, 1042, 1150
AvaI CYCGRG 2 cut(s) 302, 457
AvaII GGWCC 3 cut(s) 640, 845, 1189
BaeGI GKGCMC 1 cut(s) 415
BalI TGGCCA 1 cut(s) 987
BanII GRGCYC 1 cut(s) 1070
BauI CACGAG 1 cut(s) 776
BbsI GAAGAC 2 cut(s) 933, 936
Bbv12I GWGCWC 2 cut(s) 415, 1070
BbvCI CCTCAGC 2 cut(s) 161, 661
BbvI GCAGC 3 cut(s) 161, 778, 800
BccI CCATC 7 cut(s) 605, 716, 817, 862, 913, 962, 1078
BcgI CGANNNNNNTGC 6 cut(s) 185, 219, 613, 647, 721, 755
BciT130I CCWGG 1 cut(s) 989
BciVI GTATCC 1 cut(s) 1202
BcnI CCSGG 1 cut(s) 1187
BcoDI GTCTC 2 cut(s) 146, 291
BfaI CTAG 2 cut(s) 692, 860
BfmI CTRYAG 2 cut(s) 12, 390
BfoI RGCGCY 3 cut(s) 89, 137, 302
BfuAI ACCTGC 2 cut(s) 346, 779
BfuI GTATCC 1 cut(s) 1202
BglI GCCNNNNNGGC 1 cut(s) 665
BglII AGATCT 1 cut(s) 747
BisI GCNGC 5 cut(s) 108, 175, 666, 789, 792
BlsI GCNGC 5 cut(s) 109, 176, 667, 790, 793
Bme1390I CCNGG 2 cut(s) 989, 1187
Bme18I GGWCC 3 cut(s) 640, 845, 1189
BmeT110I CYCGRG 2 cut(s) 302, 457
BmgT120I GGNCC 3 cut(s) 640, 845, 1189
BmiI GGNNCC 4 cut(s) 309, 336, 366, 1190
BmrFI CCNGG 2 cut(s) 989, 1187
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 2 cut(s) 933, 936
BpmI CTGGAG 1 cut(s) 593
Bpu10I CCTNAGC 2 cut(s) 161, 661
BpuMI CCSGG 1 cut(s) 1187
BsaAI YACGTR 1 cut(s) 583
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 111, 988, 1061
BsaXI ACNNNNNCTCC 6 cut(s) 200, 230, 467, 497, 881, 911
Bse118I RCCGGY 2 cut(s) 82, 219
Bse3DI GCAATG 1 cut(s) 795
BseBI CCWGG 1 cut(s) 989
BseDI CCNNGG 3 cut(s) 111, 988, 1061
BseGI GGATG 2 cut(s) 859, 1141
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 4 cut(s) 175, 675, 698, 1032
BseRI GAGGAG 1 cut(s) 1048
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 3 cut(s) 161, 778, 800
BseYI CCCAGC 1 cut(s) 812
BsgI GTGCAG 1 cut(s) 884
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 2 cut(s) 105, 315
BshFI GGCC 2 cut(s) 293, 987
BsiEI CGRYCG 2 cut(s) 105, 315
BsiHKAI GWGCWC 2 cut(s) 415, 1070
BsiHKCI CYCGRG 2 cut(s) 302, 457
BsiSI CCGG 4 cut(s) 83, 220, 290, 1186
BslFI GGGAC 2 cut(s) 673, 1202
BsmAI GTCTC 2 cut(s) 146, 291
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 2 cut(s) 673, 1202
BsnI GGCC 2 cut(s) 293, 987
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 2 cut(s) 302, 457
Bsp1286I GDGCHC 2 cut(s) 415, 1070
Bsp143I GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
Bsp19I CCATGG 1 cut(s) 1061
BspACI CCGC 7 cut(s) 62, 108, 206, 547, 638, 665, 1011
BspANI GGCC 2 cut(s) 293, 987
BspCNI CTCAG 4 cut(s) 174, 674, 697, 1031
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 4 cut(s) 309, 336, 366, 1190
BspMI ACCTGC 2 cut(s) 346, 779
BspPI GGATC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 795
BsrFI RCCGGY 2 cut(s) 82, 219
BssAI RCCGGY 2 cut(s) 82, 219
BssECI CCNNGG 3 cut(s) 111, 988, 1061
BssMI GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 1 cut(s) 776
BssT1I CCWWGG 1 cut(s) 1061
Bst2BI CACGAG 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 989
Bst4CI ACNGT 3 cut(s) 115, 839, 1193
Bst6I CTCTTC 3 cut(s) 134, 267, 972
BstACI GRCGYC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 6 cut(s) 84, 242, 376, 524, 636, 1168
BstDEI CTNAG 5 cut(s) 2, 161, 661, 684, 1018
BstDSI CCRYGG 2 cut(s) 111, 1061
BstF5I GGATG 2 cut(s) 859, 1141
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 3 cut(s) 89, 137, 302
BstHHI GCGC 3 cut(s) 88, 136, 301
BstKTI GATC 7 cut(s) 67, 255, 315, 345, 615, 741, 750
BstMAI GTCTC 2 cut(s) 146, 291
BstMBI GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
BstMCI CGRYCG 2 cut(s) 105, 315
BstMWI GCNNNNNNNGC 7 cut(s) 94, 131, 142, 171, 305, 665, 797
BstNI CCWGG 1 cut(s) 989
BstNSI RCATGY 3 cut(s) 244, 634, 1174
BstSCI CCNGG 2 cut(s) 987, 1185
BstSFI CTRYAG 2 cut(s) 12, 390
BstSLI GKGCMC 1 cut(s) 415
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 161, 778, 800
BstV2I GAAGAC 2 cut(s) 933, 936
BstX2I RGATCY 2 cut(s) 64, 747
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 2 cut(s) 64, 747
BsuI GTATCC 1 cut(s) 1202
BsuRI GGCC 2 cut(s) 293, 987
BtgI CCRYGG 2 cut(s) 111, 1061
BtsCI GGATG 2 cut(s) 859, 1141
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 1 cut(s) 1086
BveI ACCTGC 2 cut(s) 346, 779
Cac8I GCNNGC 6 cut(s) 84, 242, 376, 524, 636, 1168
CfoI GCGC 3 cut(s) 88, 136, 301
Cfr10I RCCGGY 2 cut(s) 82, 219
Cfr13I GGNCC 3 cut(s) 640, 845, 1189
CseI GACGC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 829, 1015
CviAII CATG 6 cut(s) 53, 241, 631, 1062, 1171, 1204
CviQI GTAC 2 cut(s) 829, 1015
DdeI CTNAG 5 cut(s) 2, 161, 661, 684, 1018
DpnI GATC 7 cut(s) 66, 254, 314, 344, 614, 740, 749
DpnII GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
EaeI YGGCCR 2 cut(s) 291, 985
Eam1104I CTCTTC 3 cut(s) 134, 267, 972
EarI CTCTTC 3 cut(s) 134, 267, 972
Ecl136II GAGCTC 1 cut(s) 1068
Eco130I CCWWGG 1 cut(s) 1061
Eco24I GRGCYC 1 cut(s) 1070
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 3 cut(s) 640, 845, 1189
Eco47III AGCGCT 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 1068
Eco57I CTGAAG 2 cut(s) 110, 158
Eco88I CYCGRG 2 cut(s) 302, 457
EcoICRI GAGCTC 1 cut(s) 1068
EcoRII CCWGG 1 cut(s) 987
EcoT14I CCWWGG 1 cut(s) 1061
EcoT38I GRGCYC 1 cut(s) 1070
ErhI CCWWGG 1 cut(s) 1061
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 6 cut(s) 56, 244, 634, 1065, 1174, 1207
FaqI GGGAC 2 cut(s) 673, 1202
FatI CATG 6 cut(s) 52, 240, 630, 1061, 1170, 1203
FauI CCCGC 1 cut(s) 1004
Fnu4HI GCNGC 5 cut(s) 108, 175, 666, 789, 792
FokI GGATG 2 cut(s) 866, 1148
FriOI GRGCYC 1 cut(s) 1070
Fsp4HI GCNGC 5 cut(s) 108, 175, 666, 789, 792
FspBI CTAG 2 cut(s) 692, 860
GlaI GCGC 3 cut(s) 87, 135, 300
GluI GCNGC 5 cut(s) 108, 175, 666, 789, 792
GsaI CCCAGC 1 cut(s) 816
GsuI CTGGAG 1 cut(s) 593
HaeII RGCGCY 3 cut(s) 89, 137, 302
HaeIII GGCC 2 cut(s) 293, 987
HapII CCGG 4 cut(s) 83, 220, 290, 1186
HgaI GACGC 1 cut(s) 214
HhaI GCGC 3 cut(s) 88, 136, 301
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 6 cut(s) 56, 244, 634, 1065, 1174, 1207
Hin6I GCGC 3 cut(s) 86, 134, 299
HinP1I GCGC 3 cut(s) 86, 134, 299
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 6 cut(s) 325, 400, 418, 496, 620, 779
HpaII CCGG 4 cut(s) 83, 220, 290, 1186
HphI GGTGA 6 cut(s) 21, 520, 748, 883, 1042, 1150
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 5 cut(s) 39, 187, 312, 973, 1042
Hpy188III TCNNGA 6 cut(s) 76, 229, 404, 459, 610, 719
Hpy8I GTNNAC 1 cut(s) 413
Hpy99I CGWCG 3 cut(s) 200, 203, 230
HpyAV CCTTC 6 cut(s) 166, 226, 401, 496, 722, 987
HpyCH4III ACNGT 3 cut(s) 115, 839, 1193
HpyCH4IV ACGT 2 cut(s) 198, 582
HpyCH4V TGCA 7 cut(s) 72, 177, 240, 413, 865, 886, 1166
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 131, 142, 171, 305, 665, 797
HpyF3I CTNAG 5 cut(s) 2, 161, 661, 684, 1018
HpySE526I ACGT 2 cut(s) 198, 582
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 6 cut(s) 56, 244, 634, 1065, 1174, 1207
HspAI GCGC 3 cut(s) 86, 134, 299
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Kzo9I GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
LmnI GCTCC 3 cut(s) 171, 313, 1065
Lsp1109I GCAGC 3 cut(s) 161, 778, 800
LweI GCATC 1 cut(s) 81
MaeI CTAG 2 cut(s) 692, 860
MaeII ACGT 2 cut(s) 198, 582
MaeIII GTNAC 1 cut(s) 27
MalI GATC 7 cut(s) 66, 254, 314, 344, 614, 740, 749
MboI GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
MflI RGATCY 2 cut(s) 64, 747
MhlI GDGCHC 2 cut(s) 415, 1070
MlsI TGGCCA 1 cut(s) 987
MluCI AATT 1 cut(s) 40
MluNI TGGCCA 1 cut(s) 987
MlyI GAGTC 3 cut(s) 490, 614, 788
MmeI TCCRAC 2 cut(s) 872, 980
Mox20I TGGCCA 1 cut(s) 987
MroNI GCCGGC 1 cut(s) 82
MscI TGGCCA 1 cut(s) 987
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 987
MspA1I CMGCKG 2 cut(s) 665, 791
MspI CCGG 4 cut(s) 83, 220, 290, 1186
MspR9I CCNGG 2 cut(s) 989, 1187
MvaI CCWGG 1 cut(s) 989
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 7 cut(s) 94, 131, 142, 171, 305, 665, 797
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 1187
NcoI CCATGG 1 cut(s) 1061
NdeII GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 6 cut(s) 56, 244, 634, 1065, 1174, 1207
NlaIV GGNNCC 4 cut(s) 309, 336, 366, 1190
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 27
NspI RCATGY 3 cut(s) 244, 634, 1174
PaeI GCATGC 1 cut(s) 244
PaeR7I CTCGAG 2 cut(s) 302, 457
PaqCI CACCTGC 1 cut(s) 779
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 325, 400, 418
PfoI TCCNGGA 1 cut(s) 1185
PkrI GCNGC 5 cut(s) 109, 176, 667, 790, 793
Ple19I CGATCG 1 cut(s) 315
PleI GAGTC 3 cut(s) 490, 614, 787
PpsI GAGTC 3 cut(s) 490, 614, 787
Ppu21I YACGTR 1 cut(s) 583
Psp124BI GAGCTC 1 cut(s) 1070
Psp6I CCWGG 1 cut(s) 987
PspFI CCCAGC 1 cut(s) 812
PspGI CCWGG 1 cut(s) 987
PspN4I GGNNCC 4 cut(s) 309, 336, 366, 1190
PspPI GGNCC 3 cut(s) 640, 845, 1189
PspXI VCTCGAGB 1 cut(s) 302
PsrI GAACNNNNNNTAC 2 cut(s) 890, 922
PsuI RGATCY 2 cut(s) 64, 747
PvuI CGATCG 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 2 cut(s) 830, 1016
RsaNI GTAC 2 cut(s) 829, 1015
RseI CAYNNNNRTG 1 cut(s) 648
SacI GAGCTC 1 cut(s) 1070
SatI GCNGC 5 cut(s) 108, 175, 666, 789, 792
Sau3AI GATC 7 cut(s) 64, 252, 312, 342, 612, 738, 747
Sau96I GGNCC 3 cut(s) 640, 845, 1189
SchI GAGTC 3 cut(s) 490, 614, 788
ScrFI CCNGG 2 cut(s) 989, 1187
SduI GDGCHC 2 cut(s) 415, 1070
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 12, 390
Sfr274I CTCGAG 2 cut(s) 302, 457
SinI GGWCC 3 cut(s) 640, 845, 1189
SlaI CTCGAG 2 cut(s) 302, 457
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 302, 457
SmoI CTYRAG 2 cut(s) 302, 457
SphI GCATGC 1 cut(s) 244
Sse9I AATT 1 cut(s) 40
SsiI CCGC 7 cut(s) 62, 108, 206, 547, 638, 665, 1011
SspMI CTAG 2 cut(s) 692, 860
SstI GAGCTC 1 cut(s) 1070
StyD4I CCNGG 2 cut(s) 987, 1185
StyI CCWWGG 1 cut(s) 1061
TaaI ACNGT 3 cut(s) 115, 839, 1193
TaiI ACGT 2 cut(s) 201, 585
TaqI TCGA 7 cut(s) 246, 303, 315, 435, 458, 563, 623
TaqII GACCGA 1 cut(s) 91
TasI AATT 1 cut(s) 40
TauI GCSGC 2 cut(s) 110, 668
TfiI GAWTC 3 cut(s) 325, 400, 418
TscAI CASTG 1 cut(s) 1086
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 3 cut(s) 174, 788, 791
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 1152, 1192
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 1 cut(s) 1086
VneI GTGCAC 1 cut(s) 411
VpaK11BI GGWCC 3 cut(s) 640, 845, 1189
XapI RAATTY 1 cut(s) 40
XceI RCATGY 3 cut(s) 244, 634, 1174
XhoI CTCGAG 2 cut(s) 302, 457
XspI CTAG 2 cut(s) 692, 860
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.