Rroxscaffold_1G00068420

CBS domain-containing protein CBSX5-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
89597817 .. 89599544
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068420.1

Sequence Viewer

Length: 1197 bp
ATGTCACCAACTCGGAATTTGTTTTCGCATGAGGTCGCGGATCTGTGCATCGGGAAGCCGGCGCTGAAGTCGCTGTCGGTCGCCGCCACGGTAGGCGAGGCATTGTCGGCGCTGAAGAGGCTCGGCGAGACCTTCCTCAGCGTGTGGAGCTGCAACCATTCCGAGAAGAACGACGTCGTTGCGGAGGAGGAGTGCCGGTGCGTTGGGAAGGTTTGCATGCTCGATGTGATCGTTTATTTGGGGAAAGAAGAGAACCTGTCGTCTCCGGCCAAAGCGCTCGAGGCTCCGATCGAGGTTTTGATTCGCAGGGAACCTGCCACCTGCCTTGTTAGGCATTTGGAACCACACGCCAGCTTGGTGGAGGCGATAGATTTGATTCTGGAAGGTGCACAGAATCTTGTGATACCACTTGAAAGCCGCCAGAGGAACACAGGCTCAAGAAAACAGCTTATCCACAGCAACTCCTTCAACCTGACTCTCCACAACAACAGGGAATACTGCTGGCTCACCCAAGAAGATGTTATCCGCTACCTACTGAACTCGATTGGCGTCTTTAGCCACGTATCAAACAACCCCATCAACACCCTCCAGATCATTGACTCGAAAAACATGCTCGCGGTCCATTATGATGACCCTGCCTCAGCAGCATTGCCTCTCATTTCTCAGTCCCTAGTTCAGCAAACTTCGGTTGCTATTCTTGATGGGGAAGGCAGGGTGATCGGGGAGATATCGCCTTATACCCTCAACACCTGCCACGAGTCTGTGGCAGCTGCCATTGCGACGCTTTCTGCTGGGGAACTGATGGCGTACATTGACTGTGGTGGTCCGACGGATGACCTAGTGCAGATGGTGAAAGACAGGTTGCAGGAGAAGAAGTATGAGGGGTTCTTGGAGTTGATGGAAGAAGACTTCACATTGTCGTCTTCTTCTTCCATCTGTTCAACTTCTTCGGACGAAGAGTTTGGCCAGGGAAGGAGTTGGAGGTTAGGCGGGTACTCAGCAAGGCTGGTGAGGAGGTCAGAGGCGATCGTGTGCTATCCATGGAGCTCATTGGTGGCAGTGATGGTTCAGGCTCTTTCTCATCGTGTGAGTTATGTGTGGGTTGCTGATGAGGATGGAACTTTGTCTGGTATTATTACCTTTGCAAGCATGTTCAAAGTTTTCCGGGACCGTTTGAGGTTCATGGGATACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

398

Amino Acids

43.92

Weight (kDa)

5.23

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016282)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 329, 758
AatII GACGTC 1 cut(s) 177
Acc36I ACCTGC 3 cut(s) 322, 329, 758
AccII CGCG 2 cut(s) 38, 617
AciI CCGC 7 cut(s) 38, 84, 182, 418, 526, 617, 990
AclWI GGATC 1 cut(s) 48
AcoI YGGCCR 2 cut(s) 267, 964
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 2 cut(s) 86, 134
AcyI GRCGYC 2 cut(s) 174, 549
AfaI GTAC 2 cut(s) 809, 995
AfeI AGCGCT 1 cut(s) 276
AgsI TTSAA 4 cut(s) 413, 469, 942, 1156
AjnI CCWGG 1 cut(s) 966
AluBI AGCT 5 cut(s) 150, 354, 448, 770, 1047
AluI AGCT 5 cut(s) 150, 354, 448, 770, 1047
Alw21I GWGCWC 2 cut(s) 391, 1049
Alw26I GTCTC 2 cut(s) 122, 267
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 278
Aor51HI AGCGCT 1 cut(s) 276
AoxI GGCC 2 cut(s) 267, 964
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 4 cut(s) 150, 644, 767, 770
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AspLEI GCGC 3 cut(s) 64, 112, 277
AspS9I GGNCC 3 cut(s) 619, 824, 1168
AsuC2I CCSGG 1 cut(s) 1166
AsuHPI GGTGA 4 cut(s) 499, 727, 862, 1021
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 3 cut(s) 619, 824, 1168
BaeGI GKGCMC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 966
BanII GRGCYC 1 cut(s) 1049
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 2 cut(s) 912, 915
Bbv12I GWGCWC 2 cut(s) 391, 1049
BbvCI CCTCAGC 2 cut(s) 137, 640
BbvI GCAGC 4 cut(s) 137, 656, 757, 779
BccI CCATC 8 cut(s) 584, 695, 796, 841, 892, 941, 1057, 1109
BcgI CGANNNNNNTGC 6 cut(s) 161, 195, 592, 626, 700, 734
BciT130I CCWGG 1 cut(s) 968
BciVI GTATCC 1 cut(s) 1181
BcnI CCSGG 1 cut(s) 1166
BcoDI GTCTC 2 cut(s) 122, 267
BfaI CTAG 2 cut(s) 671, 839
BfoI RGCGCY 3 cut(s) 65, 113, 278
BfuAI ACCTGC 3 cut(s) 322, 329, 758
BfuI GTATCC 1 cut(s) 1181
BisI GCNGC 6 cut(s) 84, 151, 418, 645, 768, 771
BlsI GCNGC 6 cut(s) 85, 152, 419, 646, 769, 772
Bme1390I CCNGG 2 cut(s) 968, 1166
Bme18I GGWCC 3 cut(s) 619, 824, 1168
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 619, 824, 1168
BmiI GGNNCC 4 cut(s) 285, 312, 342, 1169
BmrFI CCNGG 2 cut(s) 968, 1166
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 912, 915
BpmI CTGGAG 1 cut(s) 572
Bpu10I CCTNAGC 2 cut(s) 137, 640
BpuEI CTTGAG 1 cut(s) 421
BpuMI CCSGG 1 cut(s) 1166
BsaAI YACGTR 1 cut(s) 562
BsaHI GRCGYC 2 cut(s) 174, 549
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 87, 967, 1040
BsaXI ACNNNNNCTCC 8 cut(s) 176, 182, 206, 212, 446, 476, 860, 890
Bse118I RCCGGY 2 cut(s) 58, 195
Bse3DI GCAATG 2 cut(s) 647, 774
BseBI CCWGG 1 cut(s) 968
BseDI CCNNGG 3 cut(s) 87, 967, 1040
BseGI GGATG 2 cut(s) 838, 1120
BseMI GCAATG 2 cut(s) 647, 774
BseMII CTCAG 4 cut(s) 151, 654, 677, 1011
BseRI GAGGAG 3 cut(s) 200, 203, 1027
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 4 cut(s) 137, 656, 757, 779
BseYI CCCAGC 1 cut(s) 791
BsgI GTGCAG 1 cut(s) 863
Bsh1236I CGCG 2 cut(s) 38, 617
Bsh1285I CGRYCG 3 cut(s) 81, 291, 1029
BshFI GGCC 2 cut(s) 269, 966
BsiEI CGRYCG 3 cut(s) 81, 291, 1029
BsiHKAI GWGCWC 2 cut(s) 391, 1049
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 4 cut(s) 59, 196, 266, 1165
BslFI GGGAC 2 cut(s) 652, 1181
BsmAI GTCTC 2 cut(s) 122, 267
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 2 cut(s) 652, 1181
BsnI GGCC 2 cut(s) 269, 966
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 391, 1049
Bsp143I GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
Bsp19I CCATGG 1 cut(s) 1040
BspACI CCGC 7 cut(s) 38, 84, 182, 418, 526, 617, 990
BspANI GGCC 2 cut(s) 269, 966
BspCNI CTCAG 4 cut(s) 150, 653, 676, 1010
BspFNI CGCG 2 cut(s) 38, 617
BspLI GGNNCC 4 cut(s) 285, 312, 342, 1169
BspMI ACCTGC 3 cut(s) 322, 329, 758
BspPI GGATC 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 647, 774
BsrFI RCCGGY 2 cut(s) 58, 195
BssAI RCCGGY 2 cut(s) 58, 195
BssECI CCNNGG 3 cut(s) 87, 967, 1040
BssMI GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
BssNI GRCGYC 2 cut(s) 174, 549
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 1 cut(s) 1040
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 968
Bst4CI ACNGT 3 cut(s) 91, 818, 1172
Bst6I CTCTTC 3 cut(s) 110, 243, 951
BstACI GRCGYC 2 cut(s) 174, 549
BstBAI YACGTR 1 cut(s) 562
BstC8I GCNNGC 6 cut(s) 60, 218, 352, 503, 615, 1147
BstDEI CTNAG 4 cut(s) 137, 640, 663, 997
BstDSI CCRYGG 2 cut(s) 87, 1040
BstF5I GGATG 2 cut(s) 838, 1120
BstFNI CGCG 2 cut(s) 38, 617
BstH2I RGCGCY 3 cut(s) 65, 113, 278
BstHHI GCGC 3 cut(s) 64, 112, 277
BstKTI GATC 6 cut(s) 43, 231, 291, 594, 720, 1029
BstMAI GTCTC 2 cut(s) 122, 267
BstMBI GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
BstMCI CGRYCG 3 cut(s) 81, 291, 1029
BstMWI GCNNNNNNNGC 8 cut(s) 70, 107, 118, 147, 281, 555, 644, 776
BstNI CCWGG 1 cut(s) 968
BstNSI RCATGY 3 cut(s) 220, 613, 1153
BstSCI CCNGG 2 cut(s) 966, 1164
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 2 cut(s) 38, 617
BstV1I GCAGC 4 cut(s) 137, 656, 757, 779
BstV2I GAAGAC 2 cut(s) 912, 915
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 358
BstYI RGATCY 1 cut(s) 40
BsuI GTATCC 1 cut(s) 1181
BsuRI GGCC 2 cut(s) 269, 966
BtgI CCRYGG 2 cut(s) 87, 1040
BtsCI GGATG 2 cut(s) 838, 1120
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 1 cut(s) 1065
BveI ACCTGC 3 cut(s) 322, 329, 758
Cac8I GCNNGC 6 cut(s) 60, 218, 352, 503, 615, 1147
CfoI GCGC 3 cut(s) 64, 112, 277
Cfr10I RCCGGY 2 cut(s) 58, 195
Cfr13I GGNCC 3 cut(s) 619, 824, 1168
CseI GACGC 2 cut(s) 538, 790
Csp6I GTAC 2 cut(s) 808, 994
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 6 cut(s) 29, 217, 610, 1041, 1150, 1183
CviQI GTAC 2 cut(s) 808, 994
DdeI CTNAG 4 cut(s) 137, 640, 663, 997
DpnI GATC 6 cut(s) 42, 230, 290, 593, 719, 1028
DpnII GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
EaeI YGGCCR 2 cut(s) 267, 964
Eam1104I CTCTTC 3 cut(s) 110, 243, 951
EarI CTCTTC 3 cut(s) 110, 243, 951
Ecl136II GAGCTC 1 cut(s) 1047
Eco130I CCWWGG 1 cut(s) 1040
Eco24I GRGCYC 1 cut(s) 1049
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 3 cut(s) 619, 824, 1168
Eco47III AGCGCT 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 1047
Eco57I CTGAAG 2 cut(s) 86, 134
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 1047
EcoRII CCWGG 1 cut(s) 966
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 1 cut(s) 1040
EcoT38I GRGCYC 1 cut(s) 1049
ErhI CCWWGG 1 cut(s) 1040
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 6 cut(s) 32, 220, 613, 1044, 1153, 1186
FaqI GGGAC 2 cut(s) 652, 1181
FatI CATG 6 cut(s) 28, 216, 609, 1040, 1149, 1182
FauI CCCGC 1 cut(s) 983
Fnu4HI GCNGC 6 cut(s) 84, 151, 418, 645, 768, 771
FokI GGATG 2 cut(s) 845, 1127
FriOI GRGCYC 1 cut(s) 1049
Fsp4HI GCNGC 6 cut(s) 84, 151, 418, 645, 768, 771
FspBI CTAG 2 cut(s) 671, 839
GlaI GCGC 3 cut(s) 63, 111, 276
GluI GCNGC 6 cut(s) 84, 151, 418, 645, 768, 771
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 1 cut(s) 572
HaeII RGCGCY 3 cut(s) 65, 113, 278
HaeIII GGCC 2 cut(s) 269, 966
HapII CCGG 4 cut(s) 59, 196, 266, 1165
HgaI GACGC 2 cut(s) 538, 790
HhaI GCGC 3 cut(s) 64, 112, 277
Hin1I GRCGYC 2 cut(s) 174, 549
Hin1II CATG 6 cut(s) 32, 220, 613, 1044, 1153, 1186
Hin6I GCGC 3 cut(s) 62, 110, 275
HinP1I GCGC 3 cut(s) 62, 110, 275
HinfI GANTC 6 cut(s) 301, 376, 394, 475, 599, 758
HpaII CCGG 4 cut(s) 59, 196, 266, 1165
HphI GGTGA 4 cut(s) 499, 727, 862, 1021
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 6 cut(s) 15, 163, 288, 828, 952, 1021
Hpy188III TCNNGA 5 cut(s) 52, 380, 438, 589, 698
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 4 cut(s) 176, 179, 784, 832
HpyAV CCTTC 6 cut(s) 142, 202, 377, 475, 701, 966
HpyCH4III ACNGT 3 cut(s) 91, 818, 1172
HpyCH4IV ACGT 2 cut(s) 174, 561
HpyCH4V TGCA 7 cut(s) 48, 153, 216, 389, 844, 865, 1145
HpyF10VI GCNNNNNNNGC 8 cut(s) 70, 107, 118, 147, 281, 555, 644, 776
HpyF3I CTNAG 4 cut(s) 137, 640, 663, 997
HpySE526I ACGT 2 cut(s) 174, 561
Hsp92I GRCGYC 2 cut(s) 174, 549
Hsp92II CATG 6 cut(s) 32, 220, 613, 1044, 1153, 1186
HspAI GCGC 3 cut(s) 62, 110, 275
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Kzo9I GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
LmnI GCTCC 3 cut(s) 147, 289, 1044
Lsp1109I GCAGC 4 cut(s) 137, 656, 757, 779
LweI GCATC 1 cut(s) 57
MaeI CTAG 2 cut(s) 671, 839
MaeII ACGT 2 cut(s) 174, 561
MaeIII GTNAC 1 cut(s) 3
MalI GATC 6 cut(s) 42, 230, 290, 593, 719, 1028
MboI GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 391, 1049
MlsI TGGCCA 1 cut(s) 966
MluCI AATT 1 cut(s) 16
MluNI TGGCCA 1 cut(s) 966
MlyI GAGTC 3 cut(s) 469, 593, 767
MmeI TCCRAC 2 cut(s) 851, 959
Mox20I TGGCCA 1 cut(s) 966
MroNI GCCGGC 1 cut(s) 58
MscI TGGCCA 1 cut(s) 966
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 966
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 4 cut(s) 59, 196, 266, 1165
MspR9I CCNGG 2 cut(s) 968, 1166
MvaI CCWGG 1 cut(s) 968
MvnI CGCG 2 cut(s) 38, 617
MwoI GCNNNNNNNGC 8 cut(s) 70, 107, 118, 147, 281, 555, 644, 776
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 1166
NcoI CCATGG 1 cut(s) 1040
NdeII GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
NgoMIV GCCGGC 1 cut(s) 58
NlaIII CATG 6 cut(s) 32, 220, 613, 1044, 1153, 1186
NlaIV GGNNCC 4 cut(s) 285, 312, 342, 1169
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 3 cut(s) 220, 613, 1153
PaeI GCATGC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 278
PaqCI CACCTGC 2 cut(s) 329, 758
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdiI GCCGGC 1 cut(s) 60
PfeI GAWTC 3 cut(s) 301, 376, 394
PfoI TCCNGGA 1 cut(s) 1164
PkrI GCNGC 6 cut(s) 85, 152, 419, 646, 769, 772
Ple19I CGATCG 2 cut(s) 291, 1029
PleI GAGTC 3 cut(s) 469, 593, 766
PpsI GAGTC 3 cut(s) 469, 593, 766
Ppu21I YACGTR 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 1049
Psp6I CCWGG 1 cut(s) 966
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 1 cut(s) 966
PspN4I GGNNCC 4 cut(s) 285, 312, 342, 1169
PspPI GGNCC 3 cut(s) 619, 824, 1168
PspXI VCTCGAGB 1 cut(s) 278
PsrI GAACNNNNNNTAC 2 cut(s) 869, 901
PsuI RGATCY 1 cut(s) 40
PvuI CGATCG 2 cut(s) 291, 1029
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 2 cut(s) 809, 995
RsaNI GTAC 2 cut(s) 808, 994
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 1049
SatI GCNGC 6 cut(s) 84, 151, 418, 645, 768, 771
Sau3AI GATC 6 cut(s) 40, 228, 288, 591, 717, 1026
Sau96I GGNCC 3 cut(s) 619, 824, 1168
SchI GAGTC 3 cut(s) 469, 593, 767
ScrFI CCNGG 2 cut(s) 968, 1166
SduI GDGCHC 2 cut(s) 391, 1049
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 3 cut(s) 619, 824, 1168
SlaI CTCGAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 278, 436
SmoI CTYRAG 2 cut(s) 278, 436
SphI GCATGC 1 cut(s) 220
Sse9I AATT 1 cut(s) 16
SsiI CCGC 7 cut(s) 38, 84, 182, 418, 526, 617, 990
SspMI CTAG 2 cut(s) 671, 839
SstI GAGCTC 1 cut(s) 1049
StyD4I CCNGG 2 cut(s) 966, 1164
StyI CCWWGG 1 cut(s) 1040
TaaI ACNGT 3 cut(s) 91, 818, 1172
TaiI ACGT 2 cut(s) 177, 564
TaqI TCGA 5 cut(s) 222, 279, 291, 542, 602
TaqII GACCGA 1 cut(s) 67
TasI AATT 1 cut(s) 16
TauI GCSGC 2 cut(s) 86, 420
TfiI GAWTC 3 cut(s) 301, 376, 394
TscAI CASTG 1 cut(s) 1065
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 150, 644, 767, 770
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 1171
TspGWI ACGGA 1 cut(s) 845
TspRI CASTG 1 cut(s) 1065
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 3 cut(s) 619, 824, 1168
XapI RAATTY 1 cut(s) 16
XceI RCATGY 3 cut(s) 220, 613, 1153
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 2 cut(s) 671, 839
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.