MD10G1296300.v1.1

CBS domain-containing protein CBSX5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016282
Physical Location & Seq
Reverse (-)
38412011 .. 38413579
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1296300.v1.1.491

Sequence Viewer

Length: 1185 bp
ATGGCACCGCGTCTGCATTTGCAAGAAGTGTCCGATCTTTGCCTCGGGAAGCCTCCGCTAAAGTCCGTGTCGATCTCCGCCACGGTCGGAGAGGCATTGTCGGCCCTGAAGCGGTTCGGCGAGAGCAGCCTCAGCGTTTGGAGCTGTGACCACTCGAAAAAGAGCGACGTCGATATCATCTGCAATTCTGACTCCGCAGAGGACTGCCGATGCGTAGGAAAGGTTTGCATGGTGGACGTTATATGCTTCTTGGGGAAAGAAGAGAACTTGTCGTCTCCGGCGACGGCGCTCGAGGCACCGCTGGAGGTTTTGATTCCAAAAGGGTCTGGCCTTGTTAGGCATTTGGAACCACACGATAGCTTGGTGGAGGCCATTGATCTAATTCTAGAAGGTGCACAAAACCTAGTGATTCCGATTCAAAGCCGCCGGACCACAGCGGCAAGAAAAAAGCTCCTCCCCAACCGCTCCTTCAACACCCTACACAACAACCGTGAATACTGCTGGCTCACACAAGAAGACATCATCCGCTACCTCCTCAACTACATAGGAGTCTTCAGCCCCACCTCAAACACCCCCATCAACTCCCTCCAAGTCATCGACACCGAAAACTTACTAGCCGTCCATTACGACGATCCTGCCTCTGCTGTATTGCCCCTCATTTCTCAATCCCTCGTCCAGCAAACTTCCGTTGCCATTCTTGACGTGGACGGCAAGGTGATCGGAGAGATCTCCCCGTACACCCTCAACGCCTGCCACGAGTCCGTGGCCGCTGCCATTGCCACGCTTTCCGCGGGTGACCTGATGGCGTACATTGACTGCGGTGGCCCGCCAGATGAGCTGGTTCAGTTGGTGAAAGAGAGATTGGAGGAGAAGAAGTACGGGGCGTTTTTGGAGCTAATGGAAGAAGAGTCAATGTCATCGTCTTCTTCTTTCTGTTCAACGTCTTCAGATGAAGAGTTTGGGTTGGGAAGGAGATCCGGAGGAGGGTATTCGGCACGGTTAGTAAGGAGGTCGGAGGCGATTGTGTGCTATCCCTGGAGCTCCTTGGTGGCGGTGATGGTTCAGGCGCTTTCGCATCGCGTGAGTTACGTGTGGGTTGTAGAAGAGGATGCAACTTTGTTCGGCACTGTTACCTTTGCAAGCATGTTCAAAGTCTTCCGGGAAAGTTTGAGGTCTTTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

395

Amino Acids

43.0

Weight (kDa)

4.99

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04900
malus_domestica MD05G1314900.v1.1 MD10G1296300.v1.1
prunus_persica Prupe.4G044300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0008061
rosa_laevigata RLG00000031532
rosa_multiflora Rmu_sc0001626.1_g000001 Rmu_sc0017465.1_g000002
rosa_roxburghii Rroxscaffold_1G00068420
rosa_rugosa Rorug04G0433100
rosa_samantha Rh5AG061100 Rh5BG057900 Rh5CG068000 Rh5DG057100
rosa_wichuraiana Rw5G005950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 2 cut(s) 4, 295
AccBSI CCGCTC 1 cut(s) 465
AccII CGCG 3 cut(s) 10, 791, 1080
AccIII TCCGGA 1 cut(s) 977
AclWI GGATC 2 cut(s) 626, 969
AcoI YGGCCR 1 cut(s) 765
AcuI CTGAAG 3 cut(s) 128, 538, 930
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 3 cut(s) 737, 809, 878
AfiI CCNNNNNNNGG 2 cut(s) 111, 984
AflIII ACRYGT 1 cut(s) 1089
AgsI TTSAA 4 cut(s) 419, 472, 939, 1150
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 1 cut(s) 1034
AjuI GAANNNNNNNTTGG 4 cut(s) 452, 484, 845, 877
AluBI AGCT 6 cut(s) 144, 360, 451, 838, 895, 1041
AluI AGCT 6 cut(s) 144, 360, 451, 838, 895, 1041
Alw21I GWGCWC 2 cut(s) 397, 1043
Alw26I GTCTC 1 cut(s) 279
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 2 cut(s) 626, 969
Ama87I CYCGRG 2 cut(s) 44, 290
Aor13HI TCCGGA 1 cut(s) 977
AoxI GGCC 5 cut(s) 102, 328, 369, 765, 823
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 126, 770
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 2 cut(s) 289, 1069
AspS9I GGNCC 3 cut(s) 103, 429, 824
AsuC2I CCSGG 1 cut(s) 1160
AsuHPI GGTGA 4 cut(s) 727, 806, 862, 1066
AvaI CYCGRG 2 cut(s) 44, 290
AvaII GGWCC 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 397
BanI GGYRCC 2 cut(s) 4, 295
BanII GRGCYC 1 cut(s) 1043
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 5 cut(s) 522, 544, 915, 936, 1147
Bbv12I GWGCWC 2 cut(s) 397, 1043
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 138, 757
BccI CCATC 3 cut(s) 584, 796, 1051
BceAI ACGGC 3 cut(s) 300, 602, 724
BcgI CGANNNNNNTGC 4 cut(s) 617, 651, 700, 734
BciT130I CCWGG 1 cut(s) 1036
BcnI CCSGG 1 cut(s) 1160
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 3 cut(s) 386, 404, 614
BfoI RGCGCY 2 cut(s) 290, 1070
BglII AGATCT 1 cut(s) 726
BisI GCNGC 5 cut(s) 127, 424, 438, 768, 771
BlsI GCNGC 5 cut(s) 128, 425, 439, 769, 772
Bme1390I CCNGG 2 cut(s) 1036, 1160
Bme18I GGWCC 1 cut(s) 429
BmeT110I CYCGRG 2 cut(s) 44, 290
BmgBI CACGTC 1 cut(s) 703
BmgT120I GGNCC 3 cut(s) 103, 429, 824
BmiI GGNNCC 3 cut(s) 6, 297, 348
BmrFI CCNGG 2 cut(s) 1036, 1160
BmsI GCATC 3 cut(s) 200, 1084, 1099
BpiI GAAGAC 5 cut(s) 522, 544, 915, 936, 1147
BpmI CTGGAG 2 cut(s) 323, 1057
Bpu10I CCTNAGC 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 1160
BsaAI YACGTR 1 cut(s) 1090
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 6 cut(s) 43, 81, 762, 789, 1034, 1044
BsaWI WCCGGW 1 cut(s) 977
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 984
Bse3DI GCAATG 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 977
BseBI CCWGG 1 cut(s) 1036
BseDI CCNNGG 6 cut(s) 43, 81, 762, 789, 1034, 1044
BseGI GGATG 2 cut(s) 522, 1114
BseLI CCNNNNNNNGG 2 cut(s) 111, 984
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 1 cut(s) 145
BseRI GAGGAG 4 cut(s) 443, 524, 881, 996
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 2 cut(s) 138, 757
Bsh1236I CGCG 3 cut(s) 10, 791, 1080
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 5 cut(s) 104, 330, 371, 767, 825
BshNI GGYRCC 2 cut(s) 4, 295
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 397, 1043
BsiHKCI CYCGRG 2 cut(s) 44, 290
BsiSI CCGG 4 cut(s) 278, 427, 978, 1159
BslI CCNNNNNNNGG 2 cut(s) 111, 984
BsmAI GTCTC 1 cut(s) 279
BsmBI CGTCTC 1 cut(s) 279
BsnI GGCC 5 cut(s) 104, 330, 371, 767, 825
BsoBI CYCGRG 2 cut(s) 44, 290
Bsp1286I GDGCHC 2 cut(s) 397, 1043
Bsp13I TCCGGA 1 cut(s) 977
Bsp143I GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
BspANI GGCC 5 cut(s) 104, 330, 371, 767, 825
BspCNI CTCAG 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 977
BspFNI CGCG 3 cut(s) 10, 791, 1080
BspLI GGNNCC 3 cut(s) 6, 297, 348
BspPI GGATC 2 cut(s) 626, 969
BspT107I GGYRCC 2 cut(s) 4, 295
BsrBI CCGCTC 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 774
BssECI CCNNGG 6 cut(s) 43, 81, 762, 789, 1034, 1044
BssMI GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
BssNI GRCGYC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 1 cut(s) 1044
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 1036
Bst4CI ACNGT 4 cut(s) 85, 491, 999, 1129
Bst6I CTCTTC 4 cut(s) 255, 900, 948, 1098
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 1090
BstC8I GCNNGC 4 cut(s) 503, 751, 827, 1141
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 3 cut(s) 81, 762, 789
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 2 cut(s) 522, 1114
BstFNI CGCG 3 cut(s) 10, 791, 1080
BstH2I RGCGCY 2 cut(s) 290, 1070
BstHHI GCGC 2 cut(s) 289, 1069
BstKTI GATC 7 cut(s) 37, 75, 379, 634, 720, 729, 977
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 7 cut(s) 101, 126, 132, 141, 293, 776, 835
BstNI CCWGG 1 cut(s) 1036
BstNSI RCATGY 1 cut(s) 1147
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 1034, 1158
BstSLI GKGCMC 1 cut(s) 397
BstUI CGCG 3 cut(s) 10, 791, 1080
BstV1I GCAGC 2 cut(s) 138, 757
BstV2I GAAGAC 5 cut(s) 522, 544, 915, 936, 1147
BstX2I RGATCY 2 cut(s) 726, 974
BstYI RGATCY 2 cut(s) 726, 974
BsuRI GGCC 5 cut(s) 104, 330, 371, 767, 825
BtgI CCRYGG 3 cut(s) 81, 762, 789
BtgZI GCGATG 1 cut(s) 1061
BtrI CACGTC 1 cut(s) 703
BtsCI GGATG 2 cut(s) 522, 1114
BtsIMutI CAGTG 1 cut(s) 1125
Cac8I GCNNGC 4 cut(s) 503, 751, 827, 1141
CfoI GCGC 2 cut(s) 289, 1069
Cfr13I GGNCC 3 cut(s) 103, 429, 824
Cfr42I CCGCGG 1 cut(s) 792
Csp6I GTAC 3 cut(s) 736, 808, 877
CviAII CATG 2 cut(s) 229, 1144
CviQI GTAC 3 cut(s) 736, 808, 877
DdeI CTNAG 1 cut(s) 131
DpnI GATC 7 cut(s) 36, 74, 378, 633, 719, 728, 976
DpnII GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 4 cut(s) 255, 900, 948, 1098
EarI CTCTTC 4 cut(s) 255, 900, 948, 1098
EciI GGCGGA 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 1041
Eco130I CCWWGG 1 cut(s) 1044
Eco24I GRGCYC 1 cut(s) 1043
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 1041
Eco57I CTGAAG 3 cut(s) 128, 538, 930
Eco88I CYCGRG 2 cut(s) 44, 290
Eco91I GGTNACC 1 cut(s) 794
EcoICRI GAGCTC 1 cut(s) 1041
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 1034
EcoRV GATATC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 1044
EcoT38I GRGCYC 1 cut(s) 1043
ErhI CCWWGG 1 cut(s) 1044
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 2 cut(s) 232, 1147
FaiI YATR 6 cut(s) 230, 242, 244, 545, 1145, 1183
FatI CATG 2 cut(s) 228, 1143
FauI CCCGC 2 cut(s) 784, 834
Fnu4HI GCNGC 5 cut(s) 127, 424, 438, 768, 771
FokI GGATG 2 cut(s) 509, 1121
FriOI GRGCYC 1 cut(s) 1043
Fsp4HI GCNGC 5 cut(s) 127, 424, 438, 768, 771
FspBI CTAG 3 cut(s) 386, 404, 614
GlaI GCGC 2 cut(s) 288, 1068
GluI GCNGC 5 cut(s) 127, 424, 438, 768, 771
GsuI CTGGAG 2 cut(s) 323, 1057
HaeII RGCGCY 2 cut(s) 290, 1070
HaeIII GGCC 5 cut(s) 104, 330, 371, 767, 825
HapII CCGG 4 cut(s) 278, 427, 978, 1159
HhaI GCGC 2 cut(s) 289, 1069
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 232, 1147
Hin6I GCGC 2 cut(s) 287, 1067
HinP1I GCGC 2 cut(s) 287, 1067
HinfI GANTC 7 cut(s) 191, 313, 409, 415, 549, 758, 908
HpaII CCGG 4 cut(s) 278, 427, 978, 1159
HphI GGTGA 4 cut(s) 727, 806, 862, 1066
Hpy166II GTNNAC 4 cut(s) 235, 395, 706, 738
Hpy188I TCNGA 7 cut(s) 34, 89, 190, 414, 722, 949, 1015
Hpy188III TCNNGA 4 cut(s) 46, 386, 698, 978
Hpy8I GTNNAC 4 cut(s) 235, 395, 706, 738
Hpy99I CGWCG 4 cut(s) 170, 173, 286, 632
HpyAV CCTTC 3 cut(s) 383, 478, 963
HpyCH4III ACNGT 4 cut(s) 85, 491, 999, 1129
HpyCH4IV ACGT 5 cut(s) 168, 237, 702, 941, 1089
HpyCH4V TGCA 7 cut(s) 16, 22, 183, 228, 395, 1112, 1139
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 126, 132, 141, 293, 776, 835
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 5 cut(s) 168, 237, 702, 941, 1089
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 232, 1147
HspAI GCGC 2 cut(s) 287, 1067
Kpn2I TCCGGA 1 cut(s) 977
KspI CCGCGG 1 cut(s) 792
Kzo9I GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
LmnI GCTCC 6 cut(s) 141, 456, 470, 892, 1038, 1046
Lsp1109I GCAGC 2 cut(s) 138, 757
LweI GCATC 3 cut(s) 200, 1084, 1099
MaeI CTAG 3 cut(s) 386, 404, 614
MaeII ACGT 5 cut(s) 168, 237, 702, 941, 1089
MaeIII GTNAC 4 cut(s) 146, 794, 1085, 1129
MalI GATC 7 cut(s) 36, 74, 378, 633, 719, 728, 976
MbiI CCGCTC 1 cut(s) 465
MboI GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
MflI RGATCY 2 cut(s) 726, 974
MhlI GDGCHC 2 cut(s) 397, 1043
MluCI AATT 2 cut(s) 184, 381
MlyI GAGTC 4 cut(s) 185, 558, 767, 917
MmeI TCCRAC 2 cut(s) 67, 993
MroI TCCGGA 1 cut(s) 977
MroXI GAANNNNTTC 1 cut(s) 113
MspA1I CMGCKG 4 cut(s) 301, 437, 770, 791
MspI CCGG 4 cut(s) 278, 427, 978, 1159
MspR9I CCNGG 2 cut(s) 1036, 1160
MvaI CCWGG 1 cut(s) 1036
MvnI CGCG 3 cut(s) 10, 791, 1080
MwoI GCNNNNNNNGC 7 cut(s) 101, 126, 132, 141, 293, 776, 835
NciI CCSGG 1 cut(s) 1160
NdeII GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
NlaIII CATG 2 cut(s) 232, 1147
NlaIV GGNNCC 3 cut(s) 6, 297, 348
NmuCI GTSAC 2 cut(s) 146, 794
NspI RCATGY 1 cut(s) 1147
PaeR7I CTCGAG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 753
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 3 cut(s) 313, 409, 415
PfoI TCCNGGA 1 cut(s) 1158
PkrI GCNGC 5 cut(s) 128, 425, 439, 769, 772
PleI GAGTC 4 cut(s) 185, 557, 766, 916
PpsI GAGTC 4 cut(s) 185, 557, 766, 916
Ppu21I YACGTR 1 cut(s) 1090
Psp124BI GAGCTC 1 cut(s) 1043
Psp6I CCWGG 1 cut(s) 1034
PspEI GGTNACC 1 cut(s) 794
PspGI CCWGG 1 cut(s) 1034
PspN4I GGNNCC 3 cut(s) 6, 297, 348
PspPI GGNCC 3 cut(s) 103, 429, 824
PspXI VCTCGAGB 1 cut(s) 290
PsuI RGATCY 2 cut(s) 726, 974
RsaI GTAC 3 cut(s) 737, 809, 878
RsaNI GTAC 3 cut(s) 736, 808, 877
SacI GAGCTC 1 cut(s) 1043
SacII CCGCGG 1 cut(s) 792
SatI GCNGC 5 cut(s) 127, 424, 438, 768, 771
Sau3AI GATC 7 cut(s) 34, 72, 376, 631, 717, 726, 974
Sau96I GGNCC 3 cut(s) 103, 429, 824
SchI GAGTC 4 cut(s) 185, 558, 767, 917
ScrFI CCNGG 2 cut(s) 1036, 1160
SduI GDGCHC 2 cut(s) 397, 1043
SfaNI GCATC 3 cut(s) 200, 1084, 1099
Sfr274I CTCGAG 1 cut(s) 290
Sfr303I CCGCGG 1 cut(s) 792
SgrBI CCGCGG 1 cut(s) 792
SinI GGWCC 1 cut(s) 429
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 184, 381
SspMI CTAG 3 cut(s) 386, 404, 614
SstI GAGCTC 1 cut(s) 1043
StyD4I CCNGG 2 cut(s) 1034, 1158
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 4 cut(s) 85, 491, 999, 1129
TaiI ACGT 5 cut(s) 171, 240, 705, 944, 1092
TaqI TCGA 5 cut(s) 71, 155, 171, 291, 597
TasI AATT 2 cut(s) 184, 381
TauI GCSGC 3 cut(s) 426, 440, 770
TfiI GAWTC 3 cut(s) 313, 409, 415
TscAI CASTG 1 cut(s) 1132
TseFI GTSAC 2 cut(s) 146, 794
TseI GCWGC 2 cut(s) 126, 770
Tsp45I GTSAC 2 cut(s) 146, 794
TspDTI ATGAA 1 cut(s) 966
TspGWI ACGGA 3 cut(s) 55, 676, 751
TspRI CASTG 1 cut(s) 1132
VneI GTGCAC 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 429
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 3 cut(s) 386, 404, 614
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.