Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0019288

Physical Location & Seq

Genomic Coordinates Reverse (-)

46826547 .. 46826906

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1351200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGTTCTGCTCACGCGATTCTCCGTCTCCAACGCCAACCACCTCCGCGGCGCCCCTTACGCTTCGCCTCTATTCCGTTTCCCTCGCATTCGCTCACCCAATCCAAGAAACTCAGGAAAAGCAGCTTTTCTCTGAAGTTGTACAATAACAGCCCCAAACGCCGCGTTTTTGGCAGAACTAGCGGCGTAATCAGAAGCTCGGTGGCCGAGGAAGCCAATGGCGCGGCGGAGCAGAAGCCGAAGCAGCAACCGGCGGTGAAGAGGCCCTACCCTTTCCACGAAATCGAGCTCAAATGGCAGCGTTATTGGGAGGAAAATATGACTTTTCGAACCCCCGATGAAATTGACAAGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

120

Amino Acids

13.9

Weight (kDa)

10.83

Isoelectric Point (pI)

81.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019288)

Species	Orthologous Gene IDs
malus_domestica	MD05G1351200.v1.1
pyrus_communis	pycom04g15300
rosa_samantha	Rh2AG202100 Rh2BG324700 Rh2CG206300 Rh2DG209300 Rh7AG382300 Rh7CG401800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	4 cut(s)	17, 49, 165, 224
AciI	CCGC	7 cut(s)	47, 49, 163, 183, 224, 227, 254
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	143
AluBI	AGCT	3 cut(s)	126, 198, 289
AluI	AGCT	3 cut(s)	126, 198, 289
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	32
AoxI	GGCC	2 cut(s)	204, 263
ApeKI	GCWGC	3 cut(s)	123, 244, 298
AspLEI	GCGC	2 cut(s)	54, 224
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	88, 268
AsuII	TTCGAA	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	291
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	135, 256, 310
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	7 cut(s)	50, 124, 163, 184, 225, 245, 299
BlsI	GCNGC	7 cut(s)	51, 125, 164, 185, 226, 246, 300
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	53
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	47, 207
Bse118I	RCCGGY	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	47, 207
BseMII	CTCAG	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	135, 256, 310
Bsh1236I	CGCG	4 cut(s)	17, 49, 165, 224
BshFI	GGCC	2 cut(s)	206, 265
BshNI	GGYRCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	206, 265
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	141
BspACI	CCGC	7 cut(s)	47, 49, 163, 183, 224, 227, 254
BspANI	GGCC	2 cut(s)	206, 265
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	4 cut(s)	17, 49, 165, 224
BspLI	GGNNCC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	47, 207
BssNI	GRCGYC	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	47
BstFNI	CGCG	4 cut(s)	17, 49, 165, 224
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 224
BstMAI	GTCTC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 159, 171, 180, 212, 221, 244, 295
BstUI	CGCG	4 cut(s)	17, 49, 165, 224
BstV1I	GCAGC	3 cut(s)	135, 256, 310
BsuRI	GGCC	2 cut(s)	206, 265
BtgI	CCRYGG	1 cut(s)	47
CfoI	GCGC	2 cut(s)	54, 224
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	264
Cfr42I	CCGCGG	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	8 cut(s)	126, 153, 198, 206, 215, 238, 265, 289
CviKI_1	RGCY	8 cut(s)	126, 153, 198, 206, 215, 238, 265, 289
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	113
DinI	GGCGCC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	53
EheI	GGCGCC	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	32
FaiI	YATR	1 cut(s)	320
Fnu4HI	GCNGC	7 cut(s)	50, 124, 163, 184, 225, 245, 299
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	7 cut(s)	50, 124, 163, 184, 225, 245, 299
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	2 cut(s)	53, 223
GluI	GCNGC	7 cut(s)	50, 124, 163, 184, 225, 245, 299
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	206, 265
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	2 cut(s)	54, 224
Hin1I	GRCGYC	1 cut(s)	52
Hin6I	GCGC	2 cut(s)	52, 222
HinP1I	GCGC	2 cut(s)	52, 222
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	88, 268
Hpy188I	TCNGA	2 cut(s)	135, 194
Hpy188III	TCNNGA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 159, 171, 180, 212, 221, 244, 295
HpyF3I	CTNAG	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	52
HspAI	GCGC	2 cut(s)	52, 222
KasI	GGCGCC	1 cut(s)	51
KspI	CCGCGG	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	2 cut(s)	100, 264
Lsp1109I	GCAGC	3 cut(s)	135, 256, 310
MaeI	CTAG	1 cut(s)	180
MboII	GAAGA	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	342
Mly113I	GGCGCC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	54, 79, 94, 202, 255, 304
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	88
MvnI	CGCG	4 cut(s)	17, 49, 165, 224
MwoI	GCNNNNNNNGC	8 cut(s)	60, 159, 171, 180, 212, 221, 244, 295
NarI	GGCGCC	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	328
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	7 cut(s)	51, 125, 164, 185, 226, 246, 300
PluTI	GGCGCC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	291
SacII	CCGCGG	1 cut(s)	50
SatI	GCNGC	7 cut(s)	50, 124, 163, 184, 225, 245, 299
Sau96I	GGNCC	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	46, 128, 200, 291
SfoI	GGCGCC	1 cut(s)	53
Sfr303I	CCGCGG	1 cut(s)	50
SfuI	TTCGAA	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	7 cut(s)	47, 49, 163, 183, 224, 227, 254
SspDI	GGCGCC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	291
TaqI	TCGA	2 cut(s)	285, 328
TasI	AATT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	4 cut(s)	52, 165, 186, 227
TfiI	GAWTC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	123, 244, 298
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	2 cut(s)	14, 66
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.