Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0019288

Physical Location & Seq

Genomic Coordinates Forward (+)

49937412 .. 49938203

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG382300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTGTACAACCATAGCTCCAAACGACGCTGCATTTTAATCACAACCTCAGCTTCCAATGAACCAAACGACGTCGTAGAGCAGAAGCCGAAGCAGCAATCGGTGGTGAAGAGGGCCTATCCTTTCCACGAAATTAATCGAGCCCAAGTGGCAGCGTTATTGGGAGGAAGATGGAACCTTTTGAACCCCGACGAAGTTGACATGTCAAAGCCCGAGTTCTATGTTCTTGACATGTTTCCTTATCCCAGGTTTGTGATTTTCTTAGCAAAATGTGATAACCCAGAATTTGGAATTTGGAATTTGAGTTTGAGGAGTTGGGTGCGTGAAAGTTTCGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

113

Amino Acids

13.18

Weight (kDa)

8.64

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019288)

Species	Orthologous Gene IDs
malus_domestica	MD05G1351200.v1.1
pyrus_communis	pycom04g15300
rosa_samantha	Rh2AG202100 Rh2BG324700 Rh2CG206300 Rh2DG209300 Rh7AG382300 Rh7CG401800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccB7I	CCANNNNNTGG	1 cut(s)	287
AcsI	RAATTY	3 cut(s)	284, 291, 298
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	2 cut(s)	201, 231
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	2 cut(s)	18, 53
AluI	AGCT	2 cut(s)	18, 53
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	30, 94, 152
ApoI	RAATTY	3 cut(s)	284, 291, 298
AseI	ATTAAT	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	17, 106, 164
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	3 cut(s)	31, 95, 153
BlsI	GCNGC	3 cut(s)	32, 96, 154
Bme1390I	CCNGG	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	17, 106, 164
BshFI	GGCC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	287
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	6
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	245
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	49, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 149
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	2 cut(s)	205, 235
BstSCI	CCNGG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	17, 106, 164
BsuRI	GGCC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	202, 232
CviJI	RGCY	6 cut(s)	18, 53, 88, 116, 143, 211
CviKI_1	RGCY	6 cut(s)	18, 53, 88, 116, 143, 211
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	49, 262
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	2 cut(s)	205, 235
FaiI	YATR	4 cut(s)	15, 203, 222, 233
FatI	CATG	2 cut(s)	201, 231
Fnu4HI	GCNGC	3 cut(s)	31, 95, 153
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	31, 95, 153
GluI	GCNGC	3 cut(s)	31, 95, 153
HaeIII	GGCC	1 cut(s)	116
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	205, 235
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	4 cut(s)	30, 74, 77, 194
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 149
HpyF3I	CTNAG	2 cut(s)	49, 262
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	205, 235
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	3 cut(s)	232, 259, 294
Lsp1109I	GCAGC	3 cut(s)	17, 106, 164
MaeII	ACGT	1 cut(s)	72
MboII	GAAGA	2 cut(s)	121, 180
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	4 cut(s)	132, 284, 291, 298
MnlI	CCTC	4 cut(s)	58, 105, 158, 303
MseI	TTAA	2 cut(s)	38, 135
MspR9I	CCNGG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	94, 149
NlaIII	CATG	2 cut(s)	205, 235
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	205, 235
PciI	ACATGT	2 cut(s)	201, 231
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	32, 96, 154
PscI	ACATGT	2 cut(s)	201, 231
PshBI	ATTAAT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	114
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	38, 135
SatI	GCNGC	3 cut(s)	31, 95, 153
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	6 cut(s)	20, 50, 55, 75, 180, 251
Sse9I	AATT	4 cut(s)	132, 284, 291, 298
StyD4I	CCNGG	1 cut(s)	245
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	139
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	4 cut(s)	132, 284, 291, 298
TatI	WGTACW	1 cut(s)	6
Tru1I	TTAA	2 cut(s)	38, 135
Tru9I	TTAA	2 cut(s)	38, 135
TseI	GCWGC	3 cut(s)	30, 94, 152
TspDTI	ATGAA	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	3 cut(s)	284, 291, 298
XceI	RCATGY	2 cut(s)	205, 235
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.