Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019288

Physical Location & Seq

Genomic Coordinates Reverse (-)

18206097 .. 18206557

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCGAGAAAGCCAATGGAGTGGTGGAGCAGAAACCGAAGCAGCAACCGGTGATGAGACCCTATCCTTTCCACGAAATCAACATCAAATGGCAGCGTCATTGGGAGGATATCAGACTTTTTCGAACCCCCGATGAAATTGATACCTCCAAGCCCAAATACTATCTTTTCGATATGTTCCCTTATCCTAGCGCCAGGGTTCTAAGTGTTGTTCCCGTGGATGAGGTCCTGAGGATGCCTTTTGGAAATTCCAGGAGGGATGTTCCCATGCATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

93

Amino Acids

11.06

Weight (kDa)

8.05

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019288)

Species	Orthologous Gene IDs
malus_domestica	MD05G1351200.v1.1
pyrus_communis	pycom04g15300
rosa_samantha	Rh2AG202100 Rh2BG324700 Rh2CG206300 Rh2DG209300 Rh7AG382300 Rh7CG401800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	247
AgeI	ACCGGT	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	194, 251
Alw26I	GTCTC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	43, 94
ApoI	RAATTY	1 cut(s)	247
AsiGI	ACCGGT	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	55, 106
BciT130I	CCWGG	2 cut(s)	196, 253
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	44, 95
BlsI	GCNGC	2 cut(s)	45, 96
Bme1390I	CCNGG	2 cut(s)	196, 253
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	196, 253
BmsI	GCATC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	195, 216
BsaWI	WCCGGW	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	49
Bse21I	CCTNAGG	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	196, 253
BseDI	CCNNGG	2 cut(s)	195, 216
BseGI	GGATG	3 cut(s)	226, 240, 265
BseMII	CTCAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	55, 106
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	124
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	195, 216
Bst2UI	CCWGG	2 cut(s)	196, 253
BstBI	TTCGAA	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	203, 230
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	226, 240, 265
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	196, 253
BstSCI	CCNGG	2 cut(s)	194, 251
BstV1I	GCAGC	2 cut(s)	55, 106
BstXI	CCANNNNNNTGG	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	226, 240, 265
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	86
CspAI	ACCGGT	1 cut(s)	49
CviAII	CATG	2 cut(s)	268, 272
CviJI	RGCY	3 cut(s)	5, 14, 154
CviKI_1	RGCY	3 cut(s)	5, 14, 154
DdeI	CTNAG	2 cut(s)	203, 230
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	226
Eco81I	CCTNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	194, 251
EcoRV	GATATC	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	273
FaeI	CATG	2 cut(s)	271, 275
FaiI	YATR	3 cut(s)	176, 269, 273
FatI	CATG	2 cut(s)	267, 271
Fnu4HI	GCNGC	2 cut(s)	44, 95
FokI	GGATG	3 cut(s)	233, 247, 272
Fsp4HI	GCNGC	2 cut(s)	44, 95
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	44, 95
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	271, 275
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	203, 230
Hsp92II	CATG	2 cut(s)	271, 275
HspAI	GCGC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	63, 181, 208, 238, 242, 265
Lsp1109I	GCAGC	2 cut(s)	55, 106
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	189
MluCI	AATT	2 cut(s)	138, 247
MnlI	CCTC	5 cut(s)	100, 157, 217, 225, 249
Mph1103I	ATGCAT	1 cut(s)	273
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	196, 253
MvaI	CCWGG	2 cut(s)	196, 253
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	271, 275
NmeAIII	GCCGAG	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	273
NspV	TTCGAA	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	45, 96
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	194, 251
PspGI	CCWGG	2 cut(s)	194, 251
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
SatI	GCNGC	2 cut(s)	44, 95
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	196, 253
SetI	ASST	2 cut(s)	149, 228
SfaNI	GCATC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	124
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	138, 247
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	194, 251
TaqI	TCGA	2 cut(s)	124, 171
TasI	AATT	2 cut(s)	138, 247
TseI	GCWGC	2 cut(s)	43, 94
TspDTI	ATGAA	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.