Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019288

Physical Location & Seq

Genomic Coordinates Reverse (-)

19724773 .. 19725084

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG209300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTGTACATGATGTTGTTGTACAACCACAGCTCCAAACGACGCTGCGTTTTAATCACAGCCTTAGCTTCCAATGAACCAAACGACGTCGTAGAGCAGAAGCCGAAGCAGCAATCGGCAGTGAAGAGGGCCTATCCTTTCCACGAAATTAATGGAGCCCAAGTGGCAGCGTTATTGGGAGGAAGATGGAACCTTTCGAACCCCGACGAAGTTGACATGTCAAAGCCCAAGTTCTATGTTCTTGACATGTTTCCTTATCCCAGGTTTGTGATTTTCTTAGCAAAATGTGATGACCCAGAATTTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

103

Amino Acids

11.83

Weight (kDa)

7.77

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019288)

Species	Orthologous Gene IDs
malus_domestica	MD05G1351200.v1.1
pyrus_communis	pycom04g15300
rosa_samantha	Rh2AG202100 Rh2BG324700 Rh2CG206300 Rh2DG209300 Rh7AG382300 Rh7CG401800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	299, 306
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	8, 23
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	2 cut(s)	216, 246
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	33, 68
AluI	AGCT	2 cut(s)	33, 68
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	3 cut(s)	45, 109, 167
ApoI	RAATTY	2 cut(s)	299, 306
ArsI	GACNNNNNNTTYG	1 cut(s)	284
AseI	ATTAAT	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	32, 121, 179
BccI	CCATC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	3 cut(s)	46, 110, 168
BlsI	GCNGC	3 cut(s)	47, 111, 169
Bme1390I	CCNGG	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	157, 191
BmrFI	CCNGG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	260
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	32, 121, 179
BshFI	GGCC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	302
BsnI	GGCC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1407I	TGTACA	2 cut(s)	6, 21
BspANI	GGCC	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	157, 191
BspT104I	TTCGAA	1 cut(s)	197
BsrGI	TGTACA	2 cut(s)	6, 21
BssECI	CCNNGG	1 cut(s)	260
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	87
BstAUI	TGTACA	2 cut(s)	6, 21
BstBI	TTCGAA	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	64, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 164
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	2 cut(s)	220, 250
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	32, 121, 179
BsuRI	GGCC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	7, 22
CviAII	CATG	3 cut(s)	10, 217, 247
CviJI	RGCY	7 cut(s)	33, 62, 68, 103, 131, 158, 226
CviKI_1	RGCY	7 cut(s)	33, 62, 68, 103, 131, 158, 226
CviQI	GTAC	2 cut(s)	7, 22
DdeI	CTNAG	2 cut(s)	64, 277
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	3 cut(s)	13, 220, 250
FaiI	YATR	4 cut(s)	11, 218, 237, 248
FatI	CATG	3 cut(s)	9, 216, 246
Fnu4HI	GCNGC	3 cut(s)	46, 110, 168
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	46, 110, 168
GluI	GCNGC	3 cut(s)	46, 110, 168
HaeIII	GGCC	1 cut(s)	131
HgaI	GACGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	13, 220, 250
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	4 cut(s)	45, 89, 92, 209
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 164
HpyF3I	CTNAG	2 cut(s)	64, 277
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	13, 220, 250
LmnI	GCTCC	2 cut(s)	38, 155
LpnPI	CCDG	2 cut(s)	247, 274
Lsp1109I	GCAGC	3 cut(s)	32, 121, 179
MaeII	ACGT	1 cut(s)	87
MboII	GAAGA	2 cut(s)	136, 195
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	147, 299, 306
MnlI	CCTC	2 cut(s)	120, 173
MseI	TTAA	2 cut(s)	53, 150
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	109, 164
NlaIII	CATG	3 cut(s)	13, 220, 250
NlaIV	GGNNCC	2 cut(s)	157, 191
NspI	RCATGY	2 cut(s)	220, 250
NspV	TTCGAA	1 cut(s)	197
PciI	ACATGT	2 cut(s)	216, 246
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	47, 111, 169
PscI	ACATGT	2 cut(s)	216, 246
PshBI	ATTAAT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	157, 191
PspPI	GGNCC	1 cut(s)	129
RsaI	GTAC	2 cut(s)	8, 23
RsaNI	GTAC	2 cut(s)	7, 22
SaqAI	TTAA	2 cut(s)	53, 150
SatI	GCNGC	3 cut(s)	46, 110, 168
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	5 cut(s)	35, 70, 90, 195, 266
SfuI	TTCGAA	1 cut(s)	197
Sse9I	AATT	3 cut(s)	147, 299, 306
StyD4I	CCNGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	197
TasI	AATT	3 cut(s)	147, 299, 306
TatI	WGTACW	2 cut(s)	6, 21
Tru1I	TTAA	2 cut(s)	53, 150
Tru9I	TTAA	2 cut(s)	53, 150
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	3 cut(s)	45, 109, 167
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	126
Van91I	CCANNNNNTGG	1 cut(s)	302
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	2 cut(s)	299, 306
XceI	RCATGY	2 cut(s)	220, 250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.