Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019288

Physical Location & Seq

Genomic Coordinates Forward (+)

51358777 .. 51361109

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG401800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTTGTACAACCATAGCTCCAAACGACGCTGCATTTTAATCACAACCTCAGCTTCCAATGAACCAAACGACGTCGTAGAGCAGAAGCCGAAGCAGCAATCGGTGGTGAAGAGGGCCTATCCTTTCCACGAAATTAATCGAGCCCAAGTGGCAGCGTTATTGGGAGGAAGATGGAACCTTTTGAACCCCGACGAAGTTGACATGTCAAAGCCCGAGTTCTATGTTCTTGACATGTTTCCTTATCCCAGTTTTGGATGCAGGTACTGTACACGGGAACGAGACAATACTGGAGTGAGCTGGGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

102

Amino Acids

11.82

Weight (kDa)

8.4

Isoelectric Point (pI)

60.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019288)

Species	Orthologous Gene IDs
malus_domestica	MD05G1351200.v1.1
pyrus_communis	pycom04g15300
rosa_samantha	Rh2AG202100 Rh2BG324700 Rh2CG206300 Rh2DG209300 Rh7AG382300 Rh7CG401800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	8, 263, 268
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	2 cut(s)	201, 231
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	3 cut(s)	18, 53, 297
AluI	AGCT	3 cut(s)	18, 53, 297
Alw26I	GTCTC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	30, 94, 152
AseI	ATTAAT	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	17, 106, 164
BccI	CCATC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	249
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	3 cut(s)	31, 95, 153
BlsI	GCNGC	3 cut(s)	32, 96, 154
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	176
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	72
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	246, 292
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	246, 292
BseXI	GCAGC	3 cut(s)	17, 106, 164
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp1407I	TGTACA	2 cut(s)	6, 266
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	249
BsrGI	TGTACA	2 cut(s)	6, 266
BsrI	ACTGG	2 cut(s)	246, 292
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	72
BstAUI	TGTACA	2 cut(s)	6, 266
BstDEI	CTNAG	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 149, 303
BstNSI	RCATGY	2 cut(s)	205, 235
BstV1I	GCAGC	3 cut(s)	17, 106, 164
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	7, 262, 267
CviAII	CATG	2 cut(s)	202, 232
CviJI	RGCY	7 cut(s)	18, 53, 88, 116, 143, 211, 297
CviKI_1	RGCY	7 cut(s)	18, 53, 88, 116, 143, 211, 297
CviQI	GTAC	3 cut(s)	7, 262, 267
DdeI	CTNAG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	2 cut(s)	205, 235
FaiI	YATR	4 cut(s)	15, 203, 222, 233
FatI	CATG	2 cut(s)	201, 231
Fnu4HI	GCNGC	3 cut(s)	31, 95, 153
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	31, 95, 153
GluI	GCNGC	3 cut(s)	31, 95, 153
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	116
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	205, 235
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	199, 269
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	2 cut(s)	199, 269
Hpy99I	CGWCG	4 cut(s)	30, 74, 77, 194
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	33, 258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 149, 303
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	205, 235
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	4 cut(s)	244, 259, 273, 283
Lsp1109I	GCAGC	3 cut(s)	17, 106, 164
LweI	GCATC	1 cut(s)	245
MaeII	ACGT	1 cut(s)	72
MboII	GAAGA	2 cut(s)	121, 180
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	3 cut(s)	58, 105, 158
MseI	TTAA	2 cut(s)	38, 135
MwoI	GCNNNNNNNGC	3 cut(s)	94, 149, 303
NlaIII	CATG	2 cut(s)	205, 235
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	205, 235
PciI	ACATGT	2 cut(s)	201, 231
PkrI	GCNGC	3 cut(s)	32, 96, 154
PscI	ACATGT	2 cut(s)	201, 231
PshBI	ATTAAT	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	264
RsaI	GTAC	3 cut(s)	8, 263, 268
RsaNI	GTAC	3 cut(s)	7, 262, 267
SaqAI	TTAA	2 cut(s)	38, 135
SatI	GCNGC	3 cut(s)	31, 95, 153
Sau96I	GGNCC	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	7 cut(s)	20, 50, 55, 75, 180, 263, 299
SfaNI	GCATC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	139
TasI	AATT	1 cut(s)	132
TatI	WGTACW	2 cut(s)	6, 266
Tru1I	TTAA	2 cut(s)	38, 135
Tru9I	TTAA	2 cut(s)	38, 135
TseI	GCWGC	3 cut(s)	30, 94, 152
TspDTI	ATGAA	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	135
XceI	RCATGY	2 cut(s)	205, 235
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.