Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019288

Physical Location & Seq

Genomic Coordinates Forward (+)

39593415 .. 39594633

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGTACATGATGTTGTTGTACAACCACAGCTCCAAACGACATTGCGTTTTAATCACAGCCTCAGCTTCCAATGAACAAAATGACGTCGTAGAGCAGAAGCCGATGCAACAATCGGCGGCGAAGAGGACCTATCCTTTCCACGAAATTAATCGAGCCCAAGTGGCAGCGTTATTGGGAGGAAGATGGAACCTTTCGAACCCCGACGAAGTTGACATGTCAAAGCCCAAGTTCTATGTTCTTGATATGTTTCCTTATCCCAGGCCGGAGCCGAGCGCTGCAGGTGGTAGGCCGCGAGCAAGTCTGGAGGTAGAGGTGGGGTGGCTGGATCGGAGGCACTGCAGCGAATTGGCTGGGACGATTGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

6.9

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019288)

Species	Orthologous Gene IDs
malus_domestica	MD05G1351200.v1.1
pyrus_communis	pycom04g15300
rosa_samantha	Rh2AG202100 Rh2BG324700 Rh2CG206300 Rh2DG209300 Rh7AG382300 Rh7CG401800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
AatII	GACGTC	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	272
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	119, 293
AclWI	GGATC	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	8, 23
AfeI	AGCGCT	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	33, 68
AluI	AGCT	2 cut(s)	33, 68
AlwI	GGATC	1 cut(s)	336
Aor51HI	AGCGCT	1 cut(s)	277
AoxI	GGCC	2 cut(s)	263, 290
ApeKI	GCWGC	3 cut(s)	167, 278, 342
AseI	ATTAAT	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	64
BbvI	GCAGC	3 cut(s)	179, 265, 354
BccI	CCATC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	262
BfaI	CTAG	1 cut(s)	370
BfmI	CTRYAG	2 cut(s)	279, 340
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	5 cut(s)	120, 168, 279, 293, 343
BlsI	GCNGC	5 cut(s)	121, 169, 280, 294, 344
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	191, 270
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bse3DI	GCAATG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	179, 265, 354
BseYI	CCCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	265, 292
BsiSI	CCGG	1 cut(s)	266
BsnI	GGCC	2 cut(s)	265, 292
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1407I	TGTACA	2 cut(s)	6, 21
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	119, 293
BspANI	GGCC	2 cut(s)	265, 292
BspCNI	CTCAG	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	191, 270
BspMAI	CTGCAG	2 cut(s)	283, 344
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	43
BsrGI	TGTACA	2 cut(s)	6, 21
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	87
BstAUI	TGTACA	2 cut(s)	6, 21
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	2 cut(s)	279, 340
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	179, 265, 354
BsuRI	GGCC	2 cut(s)	265, 292
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	7, 22
CviAII	CATG	2 cut(s)	10, 217
CviQI	GTAC	2 cut(s)	7, 22
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	129
Eco47III	AGCGCT	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	2 cut(s)	13, 220
FaiI	YATR	4 cut(s)	11, 218, 237, 248
FatI	CATG	2 cut(s)	9, 216
Fnu4HI	GCNGC	5 cut(s)	120, 168, 279, 293, 343
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	120, 168, 279, 293, 343
FspBI	CTAG	1 cut(s)	370
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	5 cut(s)	120, 168, 279, 293, 343
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	265, 292
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	13, 220
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	2 cut(s)	242, 305
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	2 cut(s)	92, 209
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	109, 281, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	13, 220
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	38, 268
LpnPI	CCDG	7 cut(s)	247, 267, 274, 279, 290, 311, 339
Lsp1109I	GCAGC	3 cut(s)	179, 265, 354
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	1 cut(s)	87
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	136, 195
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	147, 347
MnlI	CCTC	6 cut(s)	73, 120, 173, 301, 307, 327
MseI	TTAA	2 cut(s)	53, 150
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	13, 220
NlaIV	GGNNCC	2 cut(s)	191, 270
NmeAIII	GCCGAG	1 cut(s)	297
NspI	RCATGY	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	197
PaqCI	CACCTGC	1 cut(s)	272
PciI	ACATGT	1 cut(s)	216
PkrI	GCNGC	5 cut(s)	121, 169, 280, 294, 344
PpuMI	RGGWCCY	1 cut(s)	129
PscI	ACATGT	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	191, 270
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PstI	CTGCAG	2 cut(s)	283, 344
RsaI	GTAC	2 cut(s)	8, 23
RsaNI	GTAC	2 cut(s)	7, 22
SaqAI	TTAA	2 cut(s)	53, 150
SatI	GCNGC	5 cut(s)	120, 168, 279, 293, 343
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	8 cut(s)	35, 70, 90, 134, 195, 286, 312, 318
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	279, 340
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	2 cut(s)	147, 347
SsiI	CCGC	2 cut(s)	119, 293
SspMI	CTAG	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	154, 197
TasI	AATT	2 cut(s)	147, 347
TatI	WGTACW	2 cut(s)	6, 21
TauI	GCSGC	2 cut(s)	122, 295
Tru1I	TTAA	2 cut(s)	53, 150
Tru9I	TTAA	2 cut(s)	53, 150
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	3 cut(s)	167, 278, 342
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	150
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	370
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.