MD06G1026700.v1.1

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
3277361 .. 3288883
11523 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1026700.v1.1.491

Sequence Viewer

Length: 1365 bp
ATGTTTACTCTCTCTGCAACGCCATCCACCGCATTCCTCACGCCTAGGATTTCGCCGTCGTCTCTTTCCTCCTCCGCCTCCGCTGCTTACTCTTCGTCACCGTCGTCTTCTTCTCGGCTGTGCTTGGTCTCTTTGAGGTGGCGGAGCTCCGCCTGTCCTTGCTTGTTTTCCACCTTGAAGGTGACTGCCATGGCGGAGCTGGTGAAGGACACGGAGTCGGCTTCTTTGTCGCCCATTCAGTGTGCAGAGAAGAGGGAGACTAACCATTCTCGCACCTTTCTCAACGCGACCACTGAACAAGAGCTGCTGTCTGCAATAAGGAAGGAAACAGAAGCTGGCAGGCTTCCCTCAACTGTTGCTTCAGGAATGGAAGAATTATATCAGAATTATAAAAATGCTATTCTTCAAAGCGGAAATCCCAAGGCAGATGAGATTGTGTTGTCAAATATGACTGCTGTGTTGGATCGTGTATTCTTGGATATAGAGGATCCATTTATCTTCTCACCATATCACAAGGCAATGCGAGAGCCTTTTGATTACTACATGTTTGGTCAAAACTATATTCGTCCTTTAGTTGATTTCAGAAACTCATATGTTGGCAACCATTCCATTTTCTATGAAATTGAAGAGAAGCTTCAGCAGGGTCACAACATCTTTTTGATATCAAACCACCAAACTGAAGCAGATCCAGCTGTCATTGCCTTGTTGCTTGAATCAACAAACCCACATCTCGCTGAGAAAATGACCTACATAGCAGGAGATAGGGTTTTGACAGATCCTCTTTGTAAGCCTTTCAGCATGGGGAGGAATCTGATATGTGTATACTCCAAAAAGCACATGAATGATGTTCCTGAGCTTGTTGATATGAAAAGAAAAGCAAACACACGGAGTTTGAAGGAAATGGCAGTGCTATTGAGGGGCGGGTCACAGATTGTATGGATTGCACCTAGTGGTGGCAGGGACCGGCCAGATCCTGCAACAGGAGAATGGTACCCAGCACCTTTTGATGCTGCTTCACTGGACAATCTAAGAAGGCTTGGTGAACATTCTGCTGCGCCAGGGCATATATATCCCTTAGCATTGTTGTGTCACAACATCATGCCCCCTCCACCCCAGGTAGAAAAAGAAATTGGAGAAAGGAGAATGATCTCCTTCCATGGTACTGGATTATCGGTTGCACCAGAAATCACCTTCTCTGATATTACTGCTTCCTGTCAAAATTCTGAAGAGGCGAGGGAGGTATACACACAAGCTCTGTACGGTATCGTTACTGAACATTACAATGTGCTGAAAGCTGCTATACATTACAAACAAGGACTAAACGCATCCACTCCAAATGTTTCTTTGTCACAACCGTGGAGTTAG

Protein Analysis

455

Amino Acids

50.38

Weight (kDa)

6.13

Isoelectric Point (pI)

60.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GPAT_N PF14829 90 - 165 1.9e-37 Glycerol-3-phosphate acyltransferase N-terminal
Acyltransferase PF01553 204 - 360 3.9e-15 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
Acc65I GGTACC 1 cut(s) 990
AccB1I GGYRCC 1 cut(s) 990
AccI GTMKAC 2 cut(s) 822, 1242
AccII CGCG 1 cut(s) 287
AciI CCGC 8 cut(s) 30, 75, 81, 142, 150, 194, 411, 921
AclWI GGATC 6 cut(s) 471, 482, 495, 680, 770, 965
AcoI YGGCCR 1 cut(s) 965
AcsI RAATTY 1 cut(s) 1219
AcuI CTGAAG 4 cut(s) 345, 620, 699, 1245
AdeI CACNNNGTG 1 cut(s) 950
AfaI GTAC 3 cut(s) 992, 1162, 1259
AfiI CCNNNNNNNGG 2 cut(s) 953, 980
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 5 cut(s) 178, 407, 626, 713, 895
AhdI GACNNNNNGTC 1 cut(s) 214
AjnI CCWGG 2 cut(s) 1057, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 1113, 1145
AleI CACNNNNGTG 1 cut(s) 1354
AluBI AGCT 9 cut(s) 147, 199, 304, 335, 634, 692, 856, 1253, 1295
AluI AGCT 9 cut(s) 147, 199, 304, 335, 634, 692, 856, 1253, 1295
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 3 cut(s) 66, 133, 251
AlwI GGATC 6 cut(s) 471, 482, 495, 680, 770, 965
AlwNI CAGNNNCTG 2 cut(s) 335, 974
AoxI GGCC 1 cut(s) 965
ApeKI GCWGC 5 cut(s) 83, 304, 1010, 1052, 1295
ApoI RAATTY 1 cut(s) 1219
Asp718I GGTACC 1 cut(s) 990
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 1 cut(s) 1057
AspS9I GGNCC 1 cut(s) 961
AsuHPI GGTGA 6 cut(s) 90, 193, 214, 495, 1052, 1180
AvaII GGWCC 1 cut(s) 961
AvrII CCTAGG 1 cut(s) 44
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 990
BanII GRGCYC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 5 cut(s) 70, 291, 997, 1039, 1282
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 1059, 1115
BcoDI GTCTC 3 cut(s) 66, 133, 251
BfaI CTAG 2 cut(s) 45, 948
BisI GCNGC 5 cut(s) 84, 305, 1011, 1053, 1296
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 5 cut(s) 85, 306, 1012, 1054, 1297
Bme1390I CCNGG 2 cut(s) 1059, 1115
Bme18I GGWCC 1 cut(s) 961
BmeRI GACNNNNNGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 961
BmiI GGNNCC 3 cut(s) 489, 962, 992
BmrFI CCNGG 2 cut(s) 1059, 1115
BmsI GCATC 2 cut(s) 997, 1334
BpiI GAAGAC 1 cut(s) 99
Bpu10I CCTNAGC 2 cut(s) 852, 1075
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 7 cut(s) 44, 189, 420, 1058, 1113, 1156, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 2 cut(s) 953, 980
Bse118I RCCGGY 1 cut(s) 963
Bse1I ACTGG 2 cut(s) 1023, 1168
Bse3DI GCAATG 2 cut(s) 525, 696
BseBI CCWGG 2 cut(s) 1059, 1115
BseDI CCNNGG 7 cut(s) 44, 189, 420, 1058, 1113, 1156, 1355
BseGI GGATG 2 cut(s) 23, 1325
BseLI CCNNNNNNNGG 2 cut(s) 953, 980
BseMI GCAATG 2 cut(s) 525, 696
BseMII CTCAG 2 cut(s) 726, 843
BseNI ACTGG 2 cut(s) 1023, 1168
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 5 cut(s) 70, 291, 997, 1039, 1282
BseYI CCCAGC 1 cut(s) 994
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 967
BshNI GGYRCC 1 cut(s) 990
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 964
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 2 cut(s) 953, 980
BsmAI GTCTC 3 cut(s) 66, 133, 251
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 974
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 967
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
Bsp19I CCATGG 2 cut(s) 189, 1156
BspACI CCGC 8 cut(s) 30, 75, 81, 142, 150, 194, 411, 921
BspANI GGCC 1 cut(s) 967
BspCNI CTCAG 2 cut(s) 727, 844
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 3 cut(s) 489, 962, 992
BspPI GGATC 6 cut(s) 471, 482, 495, 680, 770, 965
BspT107I GGYRCC 1 cut(s) 990
BspTNI GGTCTC 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 525, 696
BsrFI RCCGGY 1 cut(s) 963
BsrI ACTGG 2 cut(s) 1023, 1168
BssAI RCCGGY 1 cut(s) 963
BssECI CCNNGG 7 cut(s) 44, 189, 420, 1058, 1113, 1156, 1355
BssMI GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
BssNAI GTATAC 2 cut(s) 823, 1243
BssT1I CCWWGG 4 cut(s) 44, 189, 420, 1156
Bst1107I GTATAC 2 cut(s) 823, 1243
Bst2UI CCWGG 2 cut(s) 1059, 1115
Bst4CI ACNGT 4 cut(s) 102, 355, 1262, 1356
Bst6I CTCTTC 4 cut(s) 97, 245, 621, 1221
BstC8I GCNNGC 2 cut(s) 337, 341
BstDEI CTNAG 4 cut(s) 735, 852, 1028, 1075
BstDSI CCRYGG 3 cut(s) 189, 1156, 1355
BstENI CCTNNNNNAGG 1 cut(s) 978
BstF5I GGATG 2 cut(s) 23, 1325
BstFNI CGCG 1 cut(s) 287
BstHHI GCGC 1 cut(s) 1057
BstKTI GATC 6 cut(s) 466, 490, 688, 778, 973, 1149
BstMAI GTCTC 3 cut(s) 66, 133, 251
BstMBI GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
BstMWI GCNNNNNNNGC 3 cut(s) 83, 689, 698
BstNI CCWGG 2 cut(s) 1059, 1115
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 1057, 1113
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 70, 291, 997, 1039, 1282
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 4 cut(s) 487, 685, 775, 970
BstXI CCANNNNNNTGG 1 cut(s) 1163
BstYI RGATCY 4 cut(s) 487, 685, 775, 970
BstZ17I GTATAC 2 cut(s) 823, 1243
BsuRI GGCC 1 cut(s) 967
BtgI CCRYGG 3 cut(s) 189, 1156, 1355
BtsCI GGATG 2 cut(s) 23, 1325
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 4 cut(s) 245, 291, 912, 1016
Cac8I GCNNGC 2 cut(s) 337, 341
CaiI CAGNNNCTG 2 cut(s) 335, 974
CfoI GCGC 1 cut(s) 1057
Cfr10I RCCGGY 1 cut(s) 963
Cfr13I GGNCC 1 cut(s) 961
Csp6I GTAC 3 cut(s) 991, 1161, 1258
CviAII CATG 6 cut(s) 190, 544, 799, 838, 1099, 1157
CviQI GTAC 3 cut(s) 991, 1161, 1258
DdeI CTNAG 4 cut(s) 735, 852, 1028, 1075
DpnI GATC 6 cut(s) 465, 489, 687, 777, 972, 1148
DpnII GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
DraIII CACNNNGTG 1 cut(s) 950
DriI GACNNNNNGTC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 965
Eam1104I CTCTTC 4 cut(s) 97, 245, 621, 1221
Eam1105I GACNNNNNGTC 1 cut(s) 214
EarI CTCTTC 4 cut(s) 97, 245, 621, 1221
EciI GGCGGA 4 cut(s) 64, 139, 157, 209
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 4 cut(s) 44, 189, 420, 1156
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 133
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 961
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 4 cut(s) 345, 620, 699, 1245
EcoICRI GAGCTC 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 1057, 1113
EcoRV GATATC 1 cut(s) 663
EcoT14I CCWWGG 4 cut(s) 44, 189, 420, 1156
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 4 cut(s) 44, 189, 420, 1156
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 6 cut(s) 193, 547, 802, 841, 1102, 1160
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 974
FatI CATG 6 cut(s) 189, 543, 798, 837, 1098, 1156
FauI CCCGC 1 cut(s) 914
FauNDI CATATG 1 cut(s) 592
FblI GTMKAC 2 cut(s) 822, 1242
Fnu4HI GCNGC 5 cut(s) 84, 305, 1011, 1053, 1296
FokI GGATG 2 cut(s) 10, 1312
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 5 cut(s) 84, 305, 1011, 1053, 1296
FspBI CTAG 2 cut(s) 45, 948
GlaI GCGC 1 cut(s) 1056
GluI GCNGC 5 cut(s) 84, 305, 1011, 1053, 1296
GsaI CCCAGC 1 cut(s) 998
HaeIII GGCC 1 cut(s) 967
HapII CCGG 1 cut(s) 964
HhaI GCGC 1 cut(s) 1057
Hin1II CATG 6 cut(s) 193, 547, 802, 841, 1102, 1160
Hin6I GCGC 1 cut(s) 1055
HinP1I GCGC 1 cut(s) 1055
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 3 cut(s) 215, 713, 808
HpaII CCGG 1 cut(s) 964
HphI GGTGA 6 cut(s) 90, 193, 214, 495, 1052, 1180
Hpy166II GTNNAC 4 cut(s) 6, 823, 1043, 1243
Hpy188I TCNGA 5 cut(s) 384, 584, 813, 1198, 1225
Hpy188III TCNNGA 2 cut(s) 363, 851
Hpy8I GTNNAC 4 cut(s) 6, 823, 1043, 1243
Hpy99I CGWCG 2 cut(s) 61, 106
HpyAV CCTTC 7 cut(s) 172, 199, 316, 889, 1026, 1162, 1201
HpyCH4III ACNGT 4 cut(s) 102, 355, 1262, 1356
HpyCH4V TGCA 6 cut(s) 17, 245, 314, 944, 977, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 689, 698
HpyF3I CTNAG 4 cut(s) 735, 852, 1028, 1075
Hsp92II CATG 6 cut(s) 193, 547, 802, 841, 1102, 1160
HspAI GCGC 1 cut(s) 1055
KpnI GGTACC 1 cut(s) 994
Kzo9I GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
LmnI GCTCC 3 cut(s) 144, 152, 196
Lsp1109I GCAGC 5 cut(s) 70, 291, 997, 1039, 1282
LweI GCATC 2 cut(s) 997, 1334
MaeI CTAG 2 cut(s) 45, 948
MaeIII GTNAC 7 cut(s) 96, 181, 644, 924, 1088, 1267, 1347
MalI GATC 6 cut(s) 465, 489, 687, 777, 972, 1148
MboI GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
MboII GAAGA 9 cut(s) 84, 99, 102, 262, 383, 395, 490, 638, 1238
MflI RGATCY 4 cut(s) 487, 685, 775, 970
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 5 cut(s) 374, 385, 621, 1128, 1219
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 441
MslI CAYNNNNRTG 4 cut(s) 840, 1084, 1281, 1354
MspA1I CMGCKG 2 cut(s) 83, 692
MspI CCGG 1 cut(s) 964
MspR9I CCNGG 2 cut(s) 1059, 1115
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 2 cut(s) 1059, 1115
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 83, 689, 698
NcoI CCATGG 2 cut(s) 189, 1156
NdeI CATATG 1 cut(s) 592
NdeII GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
NlaIII CATG 6 cut(s) 193, 547, 802, 841, 1102, 1160
NlaIV GGNNCC 3 cut(s) 489, 962, 992
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 6 cut(s) 96, 181, 644, 924, 1088, 1347
NspI RCATGY 1 cut(s) 547
OliI CACNNNNGTG 1 cut(s) 1354
PciI ACATGT 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 713, 808
PkrI GCNGC 5 cut(s) 85, 306, 1012, 1054, 1297
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PscI ACATGT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 1057, 1113
PspFI CCCAGC 1 cut(s) 994
PspGI CCWGG 2 cut(s) 1057, 1113
PspN4I GGNNCC 3 cut(s) 489, 962, 992
PspPI GGNCC 1 cut(s) 961
PstNI CAGNNNCTG 2 cut(s) 335, 974
PsuI RGATCY 4 cut(s) 487, 685, 775, 970
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 3 cut(s) 992, 1162, 1259
RsaNI GTAC 3 cut(s) 991, 1161, 1258
RseI CAYNNNNRTG 4 cut(s) 840, 1084, 1281, 1354
SacI GAGCTC 1 cut(s) 149
SatI GCNGC 5 cut(s) 84, 305, 1011, 1053, 1296
Sau3AI GATC 6 cut(s) 463, 487, 685, 775, 970, 1146
Sau96I GGNCC 1 cut(s) 961
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 1059, 1115
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 2 cut(s) 997, 1334
SinI GGWCC 1 cut(s) 961
SmiMI CAYNNNNRTG 4 cut(s) 840, 1084, 1281, 1354
Sse9I AATT 5 cut(s) 374, 385, 621, 1128, 1219
SsiI CCGC 8 cut(s) 30, 75, 81, 142, 150, 194, 411, 921
SspMI CTAG 2 cut(s) 45, 948
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 1057, 1113
StyI CCWWGG 4 cut(s) 44, 189, 420, 1156
TaaI ACNGT 4 cut(s) 102, 355, 1262, 1356
TasI AATT 5 cut(s) 374, 385, 621, 1128, 1219
TfiI GAWTC 2 cut(s) 713, 808
TscAI CASTG 4 cut(s) 245, 298, 912, 1023
TseFI GTSAC 6 cut(s) 96, 181, 644, 924, 1088, 1347
TseI GCWGC 5 cut(s) 83, 304, 1010, 1052, 1295
Tsp45I GTSAC 6 cut(s) 96, 181, 644, 924, 1088, 1347
TspDTI ATGAA 3 cut(s) 633, 854, 881
TspGWI ACGGA 2 cut(s) 227, 901
TspRI CASTG 4 cut(s) 245, 298, 912, 1023
VpaK11BI GGWCC 1 cut(s) 961
XagI CCTNNNNNAGG 1 cut(s) 978
XapI RAATTY 1 cut(s) 1219
XceI RCATGY 1 cut(s) 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmaJI CCTAGG 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 822, 1242
XspI CTAG 2 cut(s) 45, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.