Rroxscaffold_3G00247450

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
40759949 .. 40767599
7651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247450.1

Sequence Viewer

Length: 1338 bp
ATGGCGGAGATGGTCAAGGACAAGGAGGAGGAGTCGTCTTTGTCGGCGGTTGAGAGCGCGCAGCGCCGGGAGACTAAGCATTCACGCACGTTTCTTAATGTCACCAGTGAAGAAGGTTCGAGCTCTTTGGCTTTTGCTCTCTCTGTGTCGAAATGTTCATATGCAGAGCTGCTGTCTGCAATCAGGATGGAAACAGAAGCTGGAAGGCTTCCCTCAAATGTTGCTTCAGGAATGGAGGAATTATATCATAATTACAAAAATGCTATTCTCCAAAGTGGAAATCCCAAGGCAGATGAAATTGTTCTGTCAAATATGACTGCTGCGTTAGATCGCATATTCTTGGATATAGAGGACCCATTTGTCTTCTCACCATATCACAAAGCACTGCGAGAGCCTTTTGACTACTACATGTTTGGACAAAATTATATTCGTCCTTTAGTTGATTTCAGAAATTCATATGTTGGTAATATATCTGTTTTCTATGACATGGAACAGAAGCTTCGACAGGGTCACAACATTATTTTGATATCAAATCACCAAACTGAAGCAGATCCAGCTGTCATTGCCTTGTTGCTTGAAACAACAAACCCACATCTTGCTGAGAAAATGACCTACATAGCAGGAGATAGAGTTGTGACAGATCCTCTTTGCAAGCCCTTCAGCATCGGAAGTGGTAAAGGGAATGATGTACTATCATGGTATCAGTACACTGTGTATATAACAGTAGGGCTTTGGAAGTCAGGTGCAACTGCTATGCGTAATACAAGGTCGCTTGTTAGAATGCATATAAAAGTATCCCAGATATCTGATGGTGGTTGGGTTAAGAGAGTTGAAGAGCTGGGTGGGTCACAAATTATATGGATTGCACCAAGTGGTGGAAGGGATCGGCCAGATCCTGTAACAGAAGAATGGTTCCCACTGAAGGAAACCTTATGTGTAGGTAGTGGTGAGGCATGTGCTTCAAAGAAGGCACCTTTTGATGCTTCTGCACTGGACAATCTAAGAAGGCTTGCTGAACATTCTGCTGCTCCAGGGCATATATATCCCTTGGCATTATTGTGTCACAACATCATGCCTCCTCCACGCCAAGTAGAAAAAGAAATTGGGGAGAAGAGAATGATCGCCTTCCATGGTACTGGATTATCGGTGGCACCTGAAATCTCTTTCTCTGATATCACTGCTTCCTGTGAAAGTCCAGAAGAGGCTAAGGAGGCATACACACAAGCTCTGTATAATGCTGTTACTGAACAGTACAATGTGCTGAAATCTGCTATACACGGCAAACAAGGACTAAAGGCATCTACCCCGAATGTTTCTTTGTCACAAACATGGAATTAG

Protein Analysis

445

Amino Acids

49.34

Weight (kDa)

5.71

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GPAT_N PF14829 55 - 120 1.4e-31 Glycerol-3-phosphate acyltransferase N-terminal
Acyltransferase PF01553 163 - 221 2.9e-07 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
AccB1I GGYRCC 2 cut(s) 970, 1150
AccB7I CCANNNNNTGG 1 cut(s) 875
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 5, 47
AclWI GGATC 4 cut(s) 545, 635, 887, 891
AcoI YGGCCR 1 cut(s) 887
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 4 cut(s) 210, 564, 643, 941
AdeI CACNNNGTG 1 cut(s) 872
AfaI GTAC 4 cut(s) 690, 707, 1135, 1253
AfiI CCNNNNNNNGG 2 cut(s) 875, 922
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 3 cut(s) 578, 833, 963
AjnI CCWGG 1 cut(s) 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 1086, 1118
AluBI AGCT 7 cut(s) 123, 169, 200, 499, 557, 838, 1226
AluI AGCT 7 cut(s) 123, 169, 200, 499, 557, 838, 1226
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 4 cut(s) 545, 635, 887, 891
AlwNI CAGNNNCTG 2 cut(s) 200, 896
AoxI GGCC 1 cut(s) 887
ApeKI GCWGC 4 cut(s) 61, 169, 320, 1025
ApoI RAATTY 1 cut(s) 451
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 3 cut(s) 59, 61, 66
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 4 cut(s) 94, 360, 527, 959
AvaII GGWCC 1 cut(s) 352
BanI GGYRCC 2 cut(s) 970, 1150
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 4 cut(s) 73, 156, 307, 1012
BccI CCATC 3 cut(s) 4, 181, 803
BceAI ACGGC 1 cut(s) 1294
BciT130I CCWGG 1 cut(s) 1032
BciVI GTATCC 1 cut(s) 805
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 67
BfuI GTATCC 1 cut(s) 805
BisI GCNGC 4 cut(s) 62, 170, 321, 1026
BlsI GCNGC 4 cut(s) 63, 171, 322, 1027
Bme1390I CCNGG 2 cut(s) 68, 1032
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 4 cut(s) 354, 914, 972, 1152
BmrFI CCNGG 2 cut(s) 68, 1032
BmsI GCATC 3 cut(s) 672, 970, 1307
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 1014
Bpu10I CCTNAGC 1 cut(s) 1206
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 285, 1031, 1047, 1129
BsaXI ACNNNNNCTCC 6 cut(s) 17, 20, 47, 50, 615, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 875, 922
Bse1I ACTGG 3 cut(s) 105, 996, 1141
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 1032
BseDI CCNNGG 4 cut(s) 285, 1031, 1047, 1129
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 875, 922
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 3 cut(s) 105, 996, 1141
BsePI GCGCGC 1 cut(s) 57
BseRI GAGGAG 3 cut(s) 41, 44, 1068
BseXI GCAGC 4 cut(s) 73, 156, 307, 1012
BseYI CCCAGC 1 cut(s) 838
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 889
BshNI GGYRCC 2 cut(s) 970, 1150
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 875, 922
BsmAI GTCTC 1 cut(s) 65
BsmI GAATGC 2 cut(s) 79, 786
BsnI GGCC 1 cut(s) 889
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
Bsp19I CCATGG 1 cut(s) 1129
BspACI CCGC 2 cut(s) 5, 47
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 1 cut(s) 592
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 4 cut(s) 354, 914, 972, 1152
BspPI GGATC 4 cut(s) 545, 635, 887, 891
BspQI GCTCTTC 1 cut(s) 828
BspT107I GGYRCC 2 cut(s) 970, 1150
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 3 cut(s) 105, 996, 1141
BssECI CCNNGG 4 cut(s) 285, 1031, 1047, 1129
BssHII GCGCGC 1 cut(s) 57
BssMI GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
BssT1I CCWWGG 3 cut(s) 285, 1047, 1129
Bst2UI CCWGG 1 cut(s) 1032
Bst4CI ACNGT 3 cut(s) 712, 724, 1251
Bst6I CTCTTC 3 cut(s) 828, 1106, 1194
BstC8I GCNNGC 3 cut(s) 59, 653, 1011
BstDEI CTNAG 4 cut(s) 75, 600, 1001, 1206
BstDSI CCRYGG 1 cut(s) 1129
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 3 cut(s) 59, 61, 66
BstKTI GATC 6 cut(s) 331, 553, 643, 886, 895, 1122
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
BstMWI GCNNNNNNNGC 4 cut(s) 63, 554, 563, 1211
BstNI CCWGG 1 cut(s) 1032
BstNSI RCATGY 2 cut(s) 412, 957
BstSCI CCNGG 2 cut(s) 66, 1030
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 4 cut(s) 73, 156, 307, 1012
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 3 cut(s) 550, 640, 892
BstXI CCANNNNNNTGG 1 cut(s) 1136
BstYI RGATCY 3 cut(s) 550, 640, 892
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 889
BtgI CCRYGG 1 cut(s) 1129
BtsCI GGATG 1 cut(s) 192
BtsI GCAGTG 2 cut(s) 383, 1176
BtsIMutI CAGTG 6 cut(s) 112, 383, 708, 917, 989, 1176
Cac8I GCNNGC 3 cut(s) 59, 653, 1011
CaiI CAGNNNCTG 2 cut(s) 200, 896
CfoI GCGC 3 cut(s) 59, 61, 66
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 4 cut(s) 689, 706, 1134, 1252
CviAII CATG 7 cut(s) 409, 487, 696, 954, 1072, 1130, 1329
CviQI GTAC 4 cut(s) 689, 706, 1134, 1252
DdeI CTNAG 4 cut(s) 75, 600, 1001, 1206
DpnI GATC 6 cut(s) 330, 552, 642, 885, 894, 1121
DpnII GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
DraIII CACNNNGTG 1 cut(s) 872
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 887
Eam1104I CTCTTC 3 cut(s) 828, 1106, 1194
EarI CTCTTC 3 cut(s) 828, 1106, 1194
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 3 cut(s) 285, 1047, 1129
Eco24I GRGCYC 1 cut(s) 125
Eco32I GATATC 3 cut(s) 528, 804, 1174
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 4 cut(s) 210, 564, 643, 941
EcoICRI GAGCTC 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 1030
EcoRV GATATC 3 cut(s) 528, 804, 1174
EcoT14I CCWWGG 3 cut(s) 285, 1047, 1129
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 3 cut(s) 285, 1047, 1129
FaeI CATG 7 cut(s) 412, 490, 699, 957, 1075, 1133, 1332
FalI AAGNNNNNCTT 2 cut(s) 914, 946
FatI CATG 7 cut(s) 408, 486, 695, 953, 1071, 1129, 1328
FauNDI CATATG 2 cut(s) 160, 457
Fnu4HI GCNGC 4 cut(s) 62, 170, 321, 1026
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 4 cut(s) 62, 170, 321, 1026
GlaI GCGC 3 cut(s) 58, 60, 65
GluI GCNGC 4 cut(s) 62, 170, 321, 1026
GsaI CCCAGC 1 cut(s) 842
GsuI CTGGAG 1 cut(s) 1014
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 1 cut(s) 889
HapII CCGG 1 cut(s) 67
HhaI GCGC 3 cut(s) 59, 61, 66
Hin1II CATG 7 cut(s) 412, 490, 699, 957, 1075, 1133, 1332
Hin6I GCGC 3 cut(s) 57, 59, 64
HinP1I GCGC 3 cut(s) 57, 59, 64
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 67
HphI GGTGA 4 cut(s) 94, 360, 527, 959
Hpy166II GTNNAC 1 cut(s) 708
Hpy188I TCNGA 4 cut(s) 449, 668, 808, 1171
Hpy188III TCNNGA 3 cut(s) 184, 228, 1196
Hpy8I GTNNAC 1 cut(s) 708
HpyAV CCTTC 8 cut(s) 107, 198, 667, 873, 916, 961, 999, 1135
HpyCH4III ACNGT 3 cut(s) 712, 724, 1251
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 7 cut(s) 164, 179, 651, 746, 784, 866, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 554, 563, 1211
HpyF3I CTNAG 4 cut(s) 75, 600, 1001, 1206
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 7 cut(s) 412, 490, 699, 957, 1075, 1133, 1332
HspAI GCGC 3 cut(s) 57, 59, 64
Kzo9I GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 1 cut(s) 1033
Lsp1109I GCAGC 4 cut(s) 73, 156, 307, 1012
LweI GCATC 3 cut(s) 672, 970, 1307
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 8 cut(s) 100, 509, 634, 846, 898, 1061, 1240, 1320
MalI GATC 6 cut(s) 330, 552, 642, 885, 894, 1121
MboI GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
MboII GAAGA 6 cut(s) 122, 355, 845, 917, 1123, 1211
MflI RGATCY 3 cut(s) 550, 640, 892
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 8 cut(s) 239, 250, 297, 421, 451, 852, 1101, 1333
MlyI GAGTC 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 2 cut(s) 96, 822
MslI CAYNNNNRTG 2 cut(s) 1057, 1327
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 68, 1032
MteI GCGCNGCGC 1 cut(s) 62
Mva1269I GAATGC 2 cut(s) 79, 786
MvaI CCWGG 1 cut(s) 1032
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 4 cut(s) 63, 554, 563, 1211
NciI CCSGG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 1129
NdeI CATATG 2 cut(s) 160, 457
NdeII GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
NlaIII CATG 7 cut(s) 412, 490, 699, 957, 1075, 1133, 1332
NlaIV GGNNCC 4 cut(s) 354, 914, 972, 1152
NmuCI GTSAC 6 cut(s) 100, 509, 634, 846, 1061, 1320
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 2 cut(s) 412, 957
PauI GCGCGC 1 cut(s) 57
PciI ACATGT 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 828
PctI GAATGC 2 cut(s) 79, 786
PdmI GAANNNNTTC 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 507
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 4 cut(s) 63, 171, 322, 1027
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 352
PscI ACATGT 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 1030
PspFI CCCAGC 1 cut(s) 838
PspGI CCWGG 1 cut(s) 1030
PspN4I GGNNCC 4 cut(s) 354, 914, 972, 1152
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
PstNI CAGNNNCTG 2 cut(s) 200, 896
PsuI RGATCY 3 cut(s) 550, 640, 892
PsyI GACNNNGTC 1 cut(s) 507
PteI GCGCGC 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 4 cut(s) 690, 707, 1135, 1253
RsaNI GTAC 4 cut(s) 689, 706, 1134, 1252
RseI CAYNNNNRTG 2 cut(s) 1057, 1327
SacI GAGCTC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 2 cut(s) 96, 822
SatI GCNGC 4 cut(s) 62, 170, 321, 1026
Sau3AI GATC 6 cut(s) 328, 550, 640, 883, 892, 1119
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 68, 1032
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 3 cut(s) 672, 970, 1307
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 1057, 1327
Sse9I AATT 8 cut(s) 239, 250, 297, 421, 451, 852, 1101, 1333
SsiI CCGC 2 cut(s) 5, 47
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 66, 1030
StyI CCWWGG 3 cut(s) 285, 1047, 1129
TaaI ACNGT 3 cut(s) 712, 724, 1251
TaiI ACGT 1 cut(s) 92
TaqI TCGA 3 cut(s) 119, 149, 502
TasI AATT 8 cut(s) 239, 250, 297, 421, 451, 852, 1101, 1333
TatI WGTACW 3 cut(s) 688, 705, 1251
Tru1I TTAA 2 cut(s) 96, 822
Tru9I TTAA 2 cut(s) 96, 822
TscAI CASTG 6 cut(s) 112, 390, 715, 924, 996, 1183
TseFI GTSAC 6 cut(s) 100, 509, 634, 846, 1061, 1320
TseI GCWGC 4 cut(s) 61, 169, 320, 1025
Tsp45I GTSAC 6 cut(s) 100, 509, 634, 846, 1061, 1320
TspDTI ATGAA 3 cut(s) 147, 309, 444
TspRI CASTG 6 cut(s) 112, 390, 715, 924, 996, 1183
Tth111I GACNNNGTC 1 cut(s) 507
Van91I CCANNNNNTGG 1 cut(s) 875
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 451
XceI RCATGY 2 cut(s) 412, 957
XcmI CCANNNNNNNNNTGG 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 300
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.