Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006257

Physical Location & Seq

Genomic Coordinates Forward (+)

28601798 .. 28609662

Gene Structure 7865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG267900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTATATCCTCTCTTCTGCTACGTTTTCGTCCACCACATTCTTCACGCCTAGGGTTTCTTCTTCTTCATTGCTCTCGTCGTCGTCGTCGTCATTGTCGTCGTCGACTTCAAATTCGAAGCTGCGGCTGGTGCCTCTGAGATCGAGTCCGCGGCGGAGCTCCTCGGCCTGTCCTTGCTCGTTTTACTCGTCCTCGAAGGTCAGAGCTATGGCGGAGATGGTCAAGGACAAGGAGGAGGAGTCGTCTTTGTCGGCGGTTGAGAGCGCGCAGCGCCGGGAGACTAAGCATTCACGCACGTTTCTTAATGTCACCAGTGAAGAAGAGCTGCTGTCTGCAATCAGGATGGAAACAGAAGCTGGAAGGCTTCCCTCAAATGTTGCTTCAGGAATGGAGGAATTATATCATAATTACAAAAATGCTATTCTCCAAAGTGGAAATCCCAAGGCAGATGAAATTGTTCTGTCAAATATGACTGCTGCGTTAGATCGCATATTCTTGGATATAGAGGACCCATTTGTCTTCTCACCATATCACAAAGCACTGCGAGAGCCTTTTGACTACTACATGTTTGGACAAAATTATATTCGTCCTTTAGTTGATTTCAGAAATTCATATGTTGGTAATATATCTGTTTTCTATGACATGGAACAGAAGCTTCGACAGGGTCACAACATTATTTTGATATCAAATCACCAAACTGAAGCAGATCCAGCTGTCATTGCCTTGTTGCTTGAAACAACAAACCCACATCTTGCTGAGAAAATGACCTACATAGCAGGAGATAGAGTTGTGACAGATCCTCTTTGCAAGCCCTTCAGCATCGGAAGGAATCTTATATGTGTTTACTCAAAAAAGCACATGAATGATGTTCCTGAGCTTGCTGAAATGAAAAGAAAAGCCAACACACGGAGTTTGAAGGAAATGGCTTTGCTATTAAGGGGTGGGTCACAAATTATATGGATTGCACCAAGTGGTGGAAGGGATCGGCCAGATCCTGTAACTGAAGAATGGTTCCCAGTAAGCTCTTTCAACTTTGCATCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase GPAT_N

Protein Analysis

348

Amino Acids

39.02

Weight (kDa)

7.06

Isoelectric Point (pI)

68.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPAT_N	PF14829	97 - 172	1.6e-36	Glycerol-3-phosphate acyltransferase N-terminal
Acyltransferase	PF01553	215 - 330	1.1e-13	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32200 AT1G32200
fragaria_vesca	FvH4_5g23060 FvH4_5g23060 FvH4_5g23060 FvH4_5g23060
malus_domestica	MD06G1026700.v1.1 MD16G1279400.v1.1
prunus_persica	Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1
pyrus_communis	pycom06g02180 pycom16g24970
rosa_chinensis	RchiOBHm_Chr7g0211781
rosa_multiflora	Rmu_sc0016160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247450
rosa_rugosa	Rorug07G0128600
rosa_samantha	Rh7AG261300 Rh7BG254900 Rh7CG277900 Rh7DG267900
rosa_wichuraiana	Rw7G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	2 cut(s)	151, 266
AciI	CCGC	6 cut(s)	124, 149, 151, 154, 212, 254
AclWI	GGATC	4 cut(s)	701, 791, 986, 990
AcoI	YGGCCR	1 cut(s)	986
AcsI	RAATTY	2 cut(s)	112, 607
AcuI	CTGAAG	4 cut(s)	366, 720, 799, 1023
AdeI	CACNNNGTG	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	906, 974
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	4 cut(s)	111, 734, 916, 1030
AluBI	AGCT	9 cut(s)	121, 159, 206, 325, 356, 655, 713, 877, 1023
AluI	AGCT	9 cut(s)	121, 159, 206, 325, 356, 655, 713, 877, 1023
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	701, 791, 986, 990
AlwNI	CAGNNNCTG	2 cut(s)	356, 995
AoxI	GGCC	2 cut(s)	165, 986
ApeKI	GCWGC	4 cut(s)	121, 268, 325, 476
ApoI	RAATTY	2 cut(s)	112, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
Asp700I	GAANNNNTTC	1 cut(s)	456
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	3 cut(s)	266, 268, 273
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	301, 516, 683
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	508
AvrII	CCTAGG	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	4 cut(s)	108, 280, 312, 463
BccI	CCATC	2 cut(s)	211, 337
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	6 cut(s)	122, 125, 152, 269, 326, 477
BlnI	CCTAGG	1 cut(s)	50
BlsI	GCNGC	6 cut(s)	123, 126, 153, 270, 327, 478
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	3 cut(s)	132, 510, 1013
BmrFI	CCNGG	1 cut(s)	275
BmrI	ACTGGG	1 cut(s)	1010
BmsI	GCATC	1 cut(s)	828
BmuI	ACTGGG	1 cut(s)	1010
BpiI	GAAGAC	1 cut(s)	511
Bpu10I	CCTNAGC	1 cut(s)	873
Bpu14I	TTCGAA	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	275
BsaJI	CCNNGG	4 cut(s)	50, 149, 162, 441
BsaXI	ACNNNNNCTCC	6 cut(s)	224, 227, 254, 257, 771, 801
Bsc4I	CCNNNNNNNGG	2 cut(s)	906, 974
Bse1I	ACTGG	2 cut(s)	312, 1016
Bse3DI	GCAATG	2 cut(s)	68, 717
BseDI	CCNNGG	4 cut(s)	50, 149, 162, 441
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	906, 974
BseMI	GCAATG	2 cut(s)	68, 717
BseMII	CTCAG	3 cut(s)	128, 747, 864
BseNI	ACTGG	2 cut(s)	312, 1016
BsePI	GCGCGC	1 cut(s)	264
BseRI	GAGGAG	3 cut(s)	151, 248, 251
BseXI	GCAGC	4 cut(s)	108, 280, 312, 463
Bsh1236I	CGCG	2 cut(s)	151, 266
BshFI	GGCC	2 cut(s)	167, 988
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	906, 974
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	167, 988
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
BspACI	CCGC	6 cut(s)	124, 149, 151, 154, 212, 254
BspANI	GGCC	2 cut(s)	167, 988
BspCNI	CTCAG	3 cut(s)	129, 748, 865
BspFNI	CGCG	2 cut(s)	151, 266
BspLI	GGNNCC	3 cut(s)	132, 510, 1013
BspPI	GGATC	4 cut(s)	701, 791, 986, 990
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	68, 717
BsrI	ACTGG	2 cut(s)	312, 1016
BssECI	CCNNGG	4 cut(s)	50, 149, 162, 441
BssHII	GCGCGC	1 cut(s)	264
BssMI	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
BssT1I	CCWWGG	2 cut(s)	50, 441
Bst6I	CTCTTC	2 cut(s)	19, 315
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	266, 809, 879
BstDEI	CTNAG	4 cut(s)	137, 282, 756, 873
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	2 cut(s)	151, 266
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	3 cut(s)	266, 268, 273
BstKTI	GATC	6 cut(s)	143, 487, 709, 799, 985, 994
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 270, 710, 719
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	2 cut(s)	151, 266
BstV1I	GCAGC	4 cut(s)	108, 280, 312, 463
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	3 cut(s)	706, 796, 991
BstYI	RGATCY	3 cut(s)	706, 796, 991
BsuRI	GGCC	2 cut(s)	167, 988
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	539
BtsIMutI	CAGTG	2 cut(s)	319, 539
Cac8I	GCNNGC	3 cut(s)	266, 809, 879
CaiI	CAGNNNCTG	2 cut(s)	356, 995
CfoI	GCGC	3 cut(s)	266, 268, 273
Cfr13I	GGNCC	1 cut(s)	508
Cfr42I	CCGCGG	1 cut(s)	152
CviAII	CATG	3 cut(s)	565, 643, 859
DdeI	CTNAG	4 cut(s)	137, 282, 756, 873
DpnI	GATC	6 cut(s)	142, 486, 708, 798, 984, 993
DpnII	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
DraIII	CACNNNGTG	1 cut(s)	971
DrdI	GACNNNNNNGTC	1 cut(s)	515
DseDI	GACNNNNNNGTC	1 cut(s)	515
EaeI	YGGCCR	1 cut(s)	986
Eam1104I	CTCTTC	2 cut(s)	19, 315
EarI	CTCTTC	2 cut(s)	19, 315
EciI	GGCGGA	2 cut(s)	169, 227
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	50, 441
Eco24I	GRGCYC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	4 cut(s)	366, 720, 799, 1023
EcoICRI	GAGCTC	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	684
EcoT14I	CCWWGG	2 cut(s)	50, 441
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	50, 441
FaeI	CATG	3 cut(s)	568, 646, 862
FatI	CATG	3 cut(s)	564, 642, 858
FauNDI	CATATG	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	6 cut(s)	122, 125, 152, 269, 326, 477
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	6 cut(s)	122, 125, 152, 269, 326, 477
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	3 cut(s)	265, 267, 272
GluI	GCNGC	6 cut(s)	122, 125, 152, 269, 326, 477
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	167, 988
HapII	CCGG	1 cut(s)	274
HhaI	GCGC	3 cut(s)	266, 268, 273
Hin1II	CATG	3 cut(s)	568, 646, 862
Hin6I	GCGC	3 cut(s)	264, 266, 271
HinP1I	GCGC	3 cut(s)	264, 266, 271
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	3 cut(s)	145, 239, 829
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	3 cut(s)	301, 516, 683
Hpy166II	GTNNAC	3 cut(s)	33, 105, 844
Hpy188I	TCNGA	4 cut(s)	138, 203, 605, 824
Hpy188III	TCNNGA	3 cut(s)	340, 384, 872
Hpy8I	GTNNAC	3 cut(s)	33, 105, 844
Hpy99I	CGWCG	6 cut(s)	82, 85, 88, 91, 103, 106
HpyAV	CCTTC	6 cut(s)	190, 354, 819, 823, 910, 972
HpyCH4IV	ACGT	2 cut(s)	23, 296
HpyCH4V	TGCA	4 cut(s)	335, 807, 965, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 270, 710, 719
HpyF3I	CTNAG	4 cut(s)	137, 282, 756, 873
HpySE526I	ACGT	2 cut(s)	23, 296
Hsp92II	CATG	3 cut(s)	568, 646, 862
HspAI	GCGC	3 cut(s)	264, 266, 271
KspI	CCGCGG	1 cut(s)	152
Kzo9I	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	156, 164
Lsp1109I	GCAGC	4 cut(s)	108, 280, 312, 463
LweI	GCATC	1 cut(s)	828
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	2 cut(s)	23, 296
MaeIII	GTNAC	5 cut(s)	307, 665, 790, 945, 997
MalI	GATC	6 cut(s)	142, 486, 708, 798, 984, 993
MboI	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
MboII	GAAGA	9 cut(s)	6, 34, 51, 54, 57, 329, 332, 511, 1016
MflI	RGATCY	3 cut(s)	706, 796, 991
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	7 cut(s)	112, 395, 406, 453, 577, 607, 951
MlyI	GAGTC	2 cut(s)	154, 248
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	2 cut(s)	303, 935
MslI	CAYNNNNRTG	1 cut(s)	861
MspA1I	CMGCKG	2 cut(s)	151, 713
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	275
MteI	GCGCNGCGC	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	286
MvnI	CGCG	2 cut(s)	151, 266
MwoI	GCNNNNNNNGC	4 cut(s)	130, 270, 710, 719
NciI	CCSGG	1 cut(s)	275
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
NlaIII	CATG	3 cut(s)	568, 646, 862
NlaIV	GGNNCC	3 cut(s)	132, 510, 1013
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	4 cut(s)	307, 665, 790, 945
NspI	RCATGY	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	116
PauI	GCGCGC	1 cut(s)	264
PciI	ACATGT	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	4 cut(s)	83, 86, 95, 185
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	829
PflFI	GACNNNGTC	1 cut(s)	663
PflMI	CCANNNNNTGG	1 cut(s)	974
PkrI	GCNGC	6 cut(s)	123, 126, 153, 270, 327, 478
PleI	GAGTC	2 cut(s)	153, 247
PpsI	GAGTC	2 cut(s)	153, 247
PpuMI	RGGWCCY	1 cut(s)	508
PscI	ACATGT	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	132, 510, 1013
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PstNI	CAGNNNCTG	2 cut(s)	356, 995
PsuI	RGATCY	3 cut(s)	706, 796, 991
PsyI	GACNNNGTC	1 cut(s)	663
PteI	GCGCGC	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	861
SacI	GAGCTC	1 cut(s)	161
SacII	CCGCGG	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	303, 935
SatI	GCNGC	6 cut(s)	122, 125, 152, 269, 326, 477
Sau3AI	GATC	6 cut(s)	140, 484, 706, 796, 982, 991
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	2 cut(s)	154, 248
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	828
Sfr303I	CCGCGG	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	116
SgrBI	CCGCGG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	861
Sse9I	AATT	7 cut(s)	112, 395, 406, 453, 577, 607, 951
SsiI	CCGC	6 cut(s)	124, 149, 151, 154, 212, 254
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	2 cut(s)	50, 441
TaiI	ACGT	2 cut(s)	26, 299
TaqI	TCGA	5 cut(s)	104, 116, 143, 194, 658
TasI	AATT	7 cut(s)	112, 395, 406, 453, 577, 607, 951
TauI	GCSGC	2 cut(s)	127, 154
TfiI	GAWTC	1 cut(s)	829
Tru1I	TTAA	2 cut(s)	303, 935
Tru9I	TTAA	2 cut(s)	303, 935
TscAI	CASTG	2 cut(s)	319, 546
TseFI	GTSAC	4 cut(s)	307, 665, 790, 945
TseI	GCWGC	4 cut(s)	121, 268, 325, 476
Tsp45I	GTSAC	4 cut(s)	307, 665, 790, 945
TspDTI	ATGAA	5 cut(s)	57, 465, 600, 875, 902
TspGWI	ACGGA	1 cut(s)	922
TspRI	CASTG	2 cut(s)	319, 546
Tth111I	GACNNNGTC	1 cut(s)	663
Van91I	CCANNNNNTGG	1 cut(s)	974
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	2 cut(s)	112, 607
XceI	RCATGY	1 cut(s)	568
XmaJI	CCTAGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.