MD16G1279400.v1.1

Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate. The enzyme from chilling-resistant plants discriminates against non-fluid palmitic acid and selects oleic acid whereas the enzyme from sensitive plants accepts both fatty acids

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
37971108 .. 37989001
17894 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1279400.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGTTTACCCTCTCCGCGACGCCATCCACCACATTCCTCACGCCTAGGGTTTCGCCGTCGTCTCTTTCCTCCTCCTCCCCCTCCGCTGCTTCTTGTTCGTCACTGTCGTCGTCTTCTCGACTGTGCTTGGTCTCTGTGAGACGGCGGAGCTCTGCCTCTCCTTGCTTGTTTTCCTCCTTGAAGGTCAGTGCCATGGCGGAGCTGGTGAAGGACACGGAGTCGTTGTCTTTGTCGCCCATTCAGAGTGCAGAGAGGACGGAGACTGATCATTCTCGCACCTTTCTCAGTGCGACCACTGAACAAGAGCTGTTGTCTGTAATAAGGAAGGAAACAGAAGCTGGCAGGCTTCCCTCAACTATTGCATCAGGAATGGAAGAATTATATCAGAATTATAAAAATGCTATTCTTCAAAGCAGAAATCCCAAGGCAGATGAGACTGTGTTGTCAAATATGACTGCTGTATTGGATCGTGTATTCTTGGATATAGAGGACCCATTTGTCTTCTCACCATATCACAAAGCAATGCGAGTGCCTTTTGATTACTACATGTTTGGTCAAAACTATATTCGTCCTTTAGTTGATTTCAGAAACTCATATGTTGGCAATCTTTCCATTTTCTATGAAATTGAAGAGAAGCTTCAGCAGGGTCACAACATTTTTTTGATATCAAACCACCAAACTGAAGCAGATCCAGCTGTCATTGCCTTGTTGCTTGAATCAACAAACCCACATCTTGCTGAGAAAATGACCTACATAGCAGGAGATAGGGTTGTGACAGATCCTCTTTGTAAGCCTTTCAGCATGGGGAGGAATCTGATATGTGTGTACTCCAAAAAGCACATGAATGATGATCCTGAGCTTGCTGATATGAAAAGAAAAGCAAACACCCGGAGTTTGAAGGAAATGGCATTGCTATTGAGGGGCGGATCACAAATTGTATGGATTGCACCTAGTGGTGGAAGGGACCGCCCAGATCCTGCAACAGGAGAGTGGTACCCAGCACCTTTTGATGCTGCTTCACTGGACAATCTGAGAAGGCTTGGTGAACATTCTGCTGCTCCAGGGCATATATATCCCTTAGCATTATTGTGTCACAACATCATGCCTCCTCCAGCCCAGGTAGAAAAAGAAATTGGAGAAAAGAGAATGATCTCCTTCCATGGTACTGGATTATCAGTTGCACCAGAAATCACCTTCTCTGATATTACTGCTTCCTGTCAAAATTCTGAAGAGGCTAGGGAGGTATATGCACAAGCTCTGTATGATATTGTTACTGAACAGTACAATGTGCTCAAATCTGCTGTACATTATGAACAAGGACTAAACGCATCCACTCCAAATGTTTCTTTGTCGCAACCATGGAGTTAG

Protein Analysis

456

Amino Acids

50.36

Weight (kDa)

5.72

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GPAT_N PF14829 91 - 166 7.4e-36 Glycerol-3-phosphate acyltransferase N-terminal
Acyltransferase PF01553 205 - 361 7.1e-15 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AasI GACNNNNNNGTC 2 cut(s) 442, 497
Acc65I GGTACC 1 cut(s) 993
AccB1I GGYRCC 1 cut(s) 993
AccII CGCG 1 cut(s) 17
AciI CCGC 6 cut(s) 15, 84, 145, 197, 924, 967
AclWI GGATC 6 cut(s) 474, 683, 773, 845, 934, 968
AcsI RAATTY 1 cut(s) 1222
AcuI CTGAAG 3 cut(s) 623, 702, 1248
AcyI GRCGYC 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 953
AfaI GTAC 5 cut(s) 827, 995, 1165, 1283, 1305
AfiI CCNNNNNNNGG 2 cut(s) 956, 983
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 5 cut(s) 181, 410, 629, 716, 898
AhdI GACNNNNNGTC 1 cut(s) 217
AjnI CCWGG 2 cut(s) 1060, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 1116, 1148
AluBI AGCT 8 cut(s) 150, 202, 307, 338, 637, 695, 859, 1256
AluI AGCT 8 cut(s) 150, 202, 307, 338, 637, 695, 859, 1256
Alw21I GWGCWC 2 cut(s) 152, 1293
Alw26I GTCTC 5 cut(s) 66, 133, 136, 254, 428
AlwI GGATC 6 cut(s) 474, 683, 773, 845, 934, 968
AlwNI CAGNNNCTG 2 cut(s) 338, 977
ApeKI GCWGC 3 cut(s) 86, 1013, 1055
ApoI RAATTY 1 cut(s) 1222
Asp718I GGTACC 1 cut(s) 993
AspA2I CCTAGG 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 490, 964
AsuC2I CCSGG 1 cut(s) 889
AsuHPI GGTGA 4 cut(s) 217, 498, 1055, 1183
AvaII GGWCC 2 cut(s) 490, 964
AvrII CCTAGG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 993
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 105, 493
Bbv12I GWGCWC 2 cut(s) 152, 1293
BbvI GCAGC 3 cut(s) 73, 1000, 1042
BccI CCATC 1 cut(s) 31
BceAI ACGGC 2 cut(s) 40, 158
BciT130I CCWGG 2 cut(s) 1062, 1118
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 889
BcoDI GTCTC 5 cut(s) 66, 133, 136, 254, 428
BfaI CTAG 3 cut(s) 45, 951, 1236
BisI GCNGC 3 cut(s) 87, 1014, 1056
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 3 cut(s) 88, 1015, 1057
Bme1390I CCNGG 3 cut(s) 889, 1062, 1118
Bme18I GGWCC 2 cut(s) 490, 964
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 490, 964
BmiI GGNNCC 3 cut(s) 492, 965, 995
BmrFI CCNGG 3 cut(s) 889, 1062, 1118
BmsI GCATC 3 cut(s) 371, 1000, 1337
BpiI GAAGAC 2 cut(s) 105, 493
BpmI CTGGAG 2 cut(s) 1044, 1095
Bpu10I CCTNAGC 2 cut(s) 855, 1078
BpuMI CCSGG 1 cut(s) 889
BsaHI GRCGYC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 7 cut(s) 44, 192, 423, 1061, 1116, 1159, 1358
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 753, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 956, 983
Bse1I ACTGG 2 cut(s) 1026, 1171
Bse3DI GCAATG 3 cut(s) 528, 699, 908
BseBI CCWGG 2 cut(s) 1062, 1118
BseDI CCNNGG 7 cut(s) 44, 192, 423, 1061, 1116, 1159, 1358
BseGI GGATG 2 cut(s) 23, 1328
BseLI CCNNNNNNNGG 2 cut(s) 956, 983
BseMI GCAATG 3 cut(s) 528, 699, 908
BseMII CTCAG 4 cut(s) 298, 729, 846, 1022
BseNI ACTGG 2 cut(s) 1026, 1171
BseRI GAGGAG 3 cut(s) 61, 64, 1098
BseXI GCAGC 3 cut(s) 73, 1000, 1042
BseYI CCCAGC 1 cut(s) 997
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 993
BsiHKAI GWGCWC 2 cut(s) 152, 1293
BsiSI CCGG 1 cut(s) 889
BslFI GGGAC 1 cut(s) 977
BslI CCNNNNNNNGG 2 cut(s) 956, 983
BsmAI GTCTC 5 cut(s) 66, 133, 136, 254, 428
BsmBI CGTCTC 2 cut(s) 66, 133
BsmFI GGGAC 1 cut(s) 977
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 152, 1293
Bsp1407I TGTACA 1 cut(s) 1303
Bsp143I GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
Bsp19I CCATGG 3 cut(s) 192, 1159, 1358
BspACI CCGC 6 cut(s) 15, 84, 145, 197, 924, 967
BspCNI CTCAG 4 cut(s) 297, 730, 847, 1023
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 492, 965, 995
BspPI GGATC 6 cut(s) 474, 683, 773, 845, 934, 968
BspT107I GGYRCC 1 cut(s) 993
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 3 cut(s) 528, 699, 908
BsrGI TGTACA 1 cut(s) 1303
BsrI ACTGG 2 cut(s) 1026, 1171
BssECI CCNNGG 7 cut(s) 44, 192, 423, 1061, 1116, 1159, 1358
BssMI GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
BssNI GRCGYC 1 cut(s) 20
BssT1I CCWWGG 5 cut(s) 44, 192, 423, 1159, 1358
Bst2UI CCWGG 2 cut(s) 1062, 1118
Bst4CI ACNGT 4 cut(s) 105, 123, 439, 1281
Bst6I CTCTTC 2 cut(s) 624, 1224
BstACI GRCGYC 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 1303
BstC8I GCNNGC 3 cut(s) 340, 344, 861
BstDEI CTNAG 5 cut(s) 284, 738, 855, 1031, 1078
BstDSI CCRYGG 3 cut(s) 192, 1159, 1358
BstENI CCTNNNNNAGG 1 cut(s) 981
BstF5I GGATG 2 cut(s) 23, 1328
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 8 cut(s) 268, 469, 691, 781, 853, 929, 976, 1152
BstMAI GTCTC 5 cut(s) 66, 133, 136, 254, 428
BstMBI GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
BstMWI GCNNNNNNNGC 2 cut(s) 692, 701
BstNI CCWGG 2 cut(s) 1062, 1118
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 887, 1060, 1116
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 73, 1000, 1042
BstV2I GAAGAC 2 cut(s) 105, 493
BstX2I RGATCY 3 cut(s) 688, 778, 973
BstXI CCANNNNNNTGG 1 cut(s) 1166
BstYI RGATCY 3 cut(s) 688, 778, 973
BtgI CCRYGG 3 cut(s) 192, 1159, 1358
BtsCI GGATG 2 cut(s) 23, 1328
BtsIMutI CAGTG 5 cut(s) 101, 193, 292, 294, 1019
Cac8I GCNNGC 3 cut(s) 340, 344, 861
CaiI CAGNNNCTG 2 cut(s) 338, 977
Cfr13I GGNCC 2 cut(s) 490, 964
CseI GACGC 1 cut(s) 28
Csp6I GTAC 5 cut(s) 826, 994, 1164, 1282, 1304
CviAII CATG 7 cut(s) 193, 547, 802, 841, 1102, 1160, 1359
CviQI GTAC 5 cut(s) 826, 994, 1164, 1282, 1304
DdeI CTNAG 5 cut(s) 284, 738, 855, 1031, 1078
DpnI GATC 8 cut(s) 267, 468, 690, 780, 852, 928, 975, 1151
DpnII GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
DraIII CACNNNGTG 1 cut(s) 953
DrdI GACNNNNNNGTC 2 cut(s) 442, 497
DriI GACNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 2 cut(s) 442, 497
Eam1104I CTCTTC 2 cut(s) 624, 1224
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 2 cut(s) 624, 1224
EciI GGCGGA 3 cut(s) 160, 212, 939
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 5 cut(s) 44, 192, 423, 1159, 1358
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 666
Eco47I GGWCC 2 cut(s) 490, 964
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 3 cut(s) 623, 702, 1248
EcoICRI GAGCTC 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 981
EcoO109I RGGNCCY 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 1060, 1116
EcoRV GATATC 1 cut(s) 666
EcoT14I CCWWGG 5 cut(s) 44, 192, 423, 1159, 1358
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 5 cut(s) 44, 192, 423, 1159, 1358
Esp3I CGTCTC 2 cut(s) 66, 133
FaeI CATG 7 cut(s) 196, 550, 805, 844, 1105, 1163, 1362
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FaqI GGGAC 1 cut(s) 977
FatI CATG 7 cut(s) 192, 546, 801, 840, 1101, 1159, 1358
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 87, 1014, 1056
FokI GGATG 2 cut(s) 10, 1315
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 87, 1014, 1056
FspBI CTAG 3 cut(s) 45, 951, 1236
GluI GCNGC 3 cut(s) 87, 1014, 1056
GsaI CCCAGC 1 cut(s) 1001
GsuI CTGGAG 2 cut(s) 1044, 1095
HapII CCGG 1 cut(s) 889
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 7 cut(s) 196, 550, 805, 844, 1105, 1163, 1362
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 3 cut(s) 218, 716, 811
HpaII CCGG 1 cut(s) 889
HphI GGTGA 4 cut(s) 217, 498, 1055, 1183
Hpy166II GTNNAC 3 cut(s) 6, 826, 1046
Hpy188I TCNGA 7 cut(s) 243, 387, 587, 816, 1032, 1201, 1228
Hpy188III TCNNGA 3 cut(s) 117, 366, 854
Hpy8I GTNNAC 3 cut(s) 6, 826, 1046
Hpy99I CGWCG 3 cut(s) 22, 61, 112
HpyAV CCTTC 8 cut(s) 175, 202, 319, 892, 954, 1029, 1165, 1204
HpyCH4III ACNGT 4 cut(s) 105, 123, 439, 1281
HpyCH4V TGCA 6 cut(s) 248, 362, 947, 980, 1181, 1250
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 701
HpyF3I CTNAG 5 cut(s) 284, 738, 855, 1031, 1078
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 7 cut(s) 196, 550, 805, 844, 1105, 1163, 1362
KpnI GGTACC 1 cut(s) 997
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
LmnI GCTCC 3 cut(s) 147, 199, 1063
Lsp1109I GCAGC 3 cut(s) 73, 1000, 1042
LweI GCATC 3 cut(s) 371, 1000, 1337
MaeI CTAG 3 cut(s) 45, 951, 1236
MaeIII GTNAC 5 cut(s) 99, 647, 772, 1091, 1270
MalI GATC 8 cut(s) 267, 468, 690, 780, 852, 928, 975, 1151
MboI GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
MboII GAAGA 6 cut(s) 105, 386, 398, 493, 641, 1241
MflI RGATCY 3 cut(s) 688, 778, 973
MhlI GDGCHC 2 cut(s) 152, 1293
MluCI AATT 6 cut(s) 377, 388, 624, 933, 1131, 1222
MlyI GAGTC 1 cut(s) 227
MslI CAYNNNNRTG 2 cut(s) 843, 1087
MspA1I CMGCKG 2 cut(s) 86, 695
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 3 cut(s) 889, 1062, 1118
MvaI CCWGG 2 cut(s) 1062, 1118
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 692, 701
NciI CCSGG 1 cut(s) 889
NcoI CCATGG 3 cut(s) 192, 1159, 1358
NdeI CATATG 1 cut(s) 595
NdeII GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
NlaIII CATG 7 cut(s) 196, 550, 805, 844, 1105, 1163, 1362
NlaIV GGNNCC 3 cut(s) 492, 965, 995
NmuCI GTSAC 4 cut(s) 99, 647, 772, 1091
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PfeI GAWTC 2 cut(s) 716, 811
PkrI GCNGC 3 cut(s) 88, 1015, 1057
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 490
PscI ACATGT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 1060, 1116
PspFI CCCAGC 1 cut(s) 997
PspGI CCWGG 2 cut(s) 1060, 1116
PspN4I GGNNCC 3 cut(s) 492, 965, 995
PspPI GGNCC 2 cut(s) 490, 964
PspPPI RGGWCCY 1 cut(s) 490
PstNI CAGNNNCTG 2 cut(s) 338, 977
PsuI RGATCY 3 cut(s) 688, 778, 973
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 5 cut(s) 827, 995, 1165, 1283, 1305
RsaNI GTAC 5 cut(s) 826, 994, 1164, 1282, 1304
RseI CAYNNNNRTG 2 cut(s) 843, 1087
SacI GAGCTC 1 cut(s) 152
SatI GCNGC 3 cut(s) 87, 1014, 1056
Sau3AI GATC 8 cut(s) 265, 466, 688, 778, 850, 926, 973, 1149
Sau96I GGNCC 2 cut(s) 490, 964
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 889, 1062, 1118
SduI GDGCHC 2 cut(s) 152, 1293
SfaNI GCATC 3 cut(s) 371, 1000, 1337
SinI GGWCC 2 cut(s) 490, 964
SmiMI CAYNNNNRTG 2 cut(s) 843, 1087
Sse9I AATT 6 cut(s) 377, 388, 624, 933, 1131, 1222
SsiI CCGC 6 cut(s) 15, 84, 145, 197, 924, 967
SspMI CTAG 3 cut(s) 45, 951, 1236
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 887, 1060, 1116
StyI CCWWGG 5 cut(s) 44, 192, 423, 1159, 1358
TaaI ACNGT 4 cut(s) 105, 123, 439, 1281
TaqI TCGA 1 cut(s) 118
TasI AATT 6 cut(s) 377, 388, 624, 933, 1131, 1222
TatI WGTACW 3 cut(s) 825, 1281, 1303
TfiI GAWTC 2 cut(s) 716, 811
TscAI CASTG 5 cut(s) 108, 193, 292, 301, 1026
TseFI GTSAC 4 cut(s) 99, 647, 772, 1091
TseI GCWGC 3 cut(s) 86, 1013, 1055
Tsp45I GTSAC 4 cut(s) 99, 647, 772, 1091
TspDTI ATGAA 4 cut(s) 636, 857, 884, 1326
TspGWI ACGGA 2 cut(s) 230, 272
TspRI CASTG 5 cut(s) 108, 193, 292, 301, 1026
VpaK11BI GGWCC 2 cut(s) 490, 964
XagI CCTNNNNNAGG 1 cut(s) 981
XapI RAATTY 1 cut(s) 1222
XceI RCATGY 1 cut(s) 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 44
XspI CTAG 3 cut(s) 45, 951, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.