Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006257

Physical Location & Seq

Genomic Coordinates Reverse (-)

2618320 .. 2622848

Gene Structure 4529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGGAGGAATCTGATATGTGTATACTCCAAAAAGCACATGAATGATGTTCCTGAGCTTGCTGATATGAAAAGGAAAGCAAACACACGGAGCTTGAAGGAAATGGCAGTGCTATTGAGGGGCGGGTCACAGATTGTATGGATTGCACCTAGTGGTGGAAGGGACCGGCCAGATCCTGCAACAGGAGAATGGTACCCGGCACCTTTTGATGCTGCTTCACTGGACAATCTAAGAAGGCTTGGTGAACATTCTGCTGCACCAGGGCATATATATCCCTTAGCATTGTTGTGTCACAACATCATGCCCCCTCCACCCCAGGTAGAAAAAGAAATTGGAGAAAGGAGAATGATCGCCTTCCATGGTACTGGGTTATCGGTTGCACCAGAAATCACCTTCTCTGATATTACTGCTTCCTGTCAAAATTCTGAAGAGGCTAGGGAGGTATACTCACAAGCTCTGTATGGTATTGTTACTGAACATTACAATGTGCTGAAAGCTGCTATACATTACGAACAAGGACTAAACGCATCCACTCCAAATGTTTCTTTGTCACAACCATGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006644 GO:0006650 GO:0006655 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046471 GO:0046474 GO:0046486 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase GPAT_N

Protein Analysis

189

Amino Acids

20.72

Weight (kDa)

6.37

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32200 AT1G32200
fragaria_vesca	FvH4_5g23060 FvH4_5g23060 FvH4_5g23060 FvH4_5g23060
malus_domestica	MD06G1026700.v1.1 MD16G1279400.v1.1
prunus_persica	Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1 Prupe.5G027200_v2.0.a1
pyrus_communis	pycom06g02180 pycom16g24970
rosa_chinensis	RchiOBHm_Chr7g0211781
rosa_multiflora	Rmu_sc0016160.1_g000003
rosa_roxburghii	Rroxscaffold_3G00247450
rosa_rugosa	Rorug07G0128600
rosa_samantha	Rh7AG261300 Rh7BG254900 Rh7CG277900 Rh7DG267900
rosa_wichuraiana	Rw7G022270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	192
AccB1I	GGYRCC	2 cut(s)	192, 199
AccI	GTMKAC	2 cut(s)	24, 444
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	194, 364
AfiI	CCNNNNNNNGG	2 cut(s)	155, 182
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	259, 315
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	4 cut(s)	58, 93, 455, 497
AluI	AGCT	4 cut(s)	58, 93, 455, 497
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	3 cut(s)	212, 254, 497
ApoI	RAATTY	1 cut(s)	421
Asp718I	GGTACC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	254, 382
AvaII	GGWCC	1 cut(s)	163
BanI	GGYRCC	2 cut(s)	192, 199
BbvI	GCAGC	3 cut(s)	199, 241, 484
BciT130I	CCWGG	2 cut(s)	261, 317
BcnI	CCSGG	1 cut(s)	197
BfaI	CTAG	2 cut(s)	150, 435
BisI	GCNGC	3 cut(s)	213, 255, 498
BlsI	GCNGC	3 cut(s)	214, 256, 499
Bme1390I	CCNGG	3 cut(s)	197, 261, 317
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	3 cut(s)	164, 194, 201
BmrFI	CCNGG	3 cut(s)	197, 261, 317
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	199, 536
BmuI	ACTGGG	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
Bpu10I	CCTNAGC	2 cut(s)	54, 277
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	260, 315, 358, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 182
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	225, 370
BseBI	CCWGG	2 cut(s)	261, 317
BseDI	CCNNGG	4 cut(s)	260, 315, 358, 557
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	155, 182
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	225, 370
BseXI	GCAGC	3 cut(s)	199, 241, 484
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	2 cut(s)	192, 199
BsiSI	CCGG	2 cut(s)	166, 197
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	155, 182
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	172, 348
Bsp19I	CCATGG	2 cut(s)	358, 557
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	3 cut(s)	164, 194, 201
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	2 cut(s)	192, 199
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	225, 370
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	4 cut(s)	260, 315, 358, 557
BssMI	GATC	2 cut(s)	172, 348
BssNAI	GTATAC	2 cut(s)	25, 445
BssT1I	CCWWGG	2 cut(s)	358, 557
Bst1107I	GTATAC	2 cut(s)	25, 445
Bst2UI	CCWGG	2 cut(s)	261, 317
Bst6I	CTCTTC	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	54, 230, 277
BstDSI	CCRYGG	2 cut(s)	358, 557
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	527
BstKTI	GATC	2 cut(s)	175, 351
BstMBI	GATC	2 cut(s)	172, 348
BstNI	CCWGG	2 cut(s)	261, 317
BstSCI	CCNGG	3 cut(s)	195, 259, 315
BstV1I	GCAGC	3 cut(s)	199, 241, 484
BstX2I	RGATCY	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	172
BstZ17I	GTATAC	2 cut(s)	25, 445
BsuRI	GGCC	1 cut(s)	169
BtgI	CCRYGG	2 cut(s)	358, 557
BtsCI	GGATG	1 cut(s)	527
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 218
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	193, 363
CviAII	CATG	4 cut(s)	40, 301, 359, 558
CviJI	RGCY	7 cut(s)	58, 93, 169, 238, 434, 455, 497
CviKI_1	RGCY	7 cut(s)	58, 93, 169, 238, 434, 455, 497
CviQI	GTAC	2 cut(s)	193, 363
DdeI	CTNAG	3 cut(s)	54, 230, 277
DpnI	GATC	2 cut(s)	174, 350
DpnII	GATC	2 cut(s)	172, 348
DraIII	CACNNNGTG	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	358, 557
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	259, 315
EcoT14I	CCWWGG	2 cut(s)	358, 557
ErhI	CCWWGG	2 cut(s)	358, 557
FaeI	CATG	4 cut(s)	43, 304, 362, 561
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	4 cut(s)	39, 300, 358, 557
FauI	CCCGC	1 cut(s)	116
FblI	GTMKAC	2 cut(s)	24, 444
Fnu4HI	GCNGC	3 cut(s)	213, 255, 498
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	3 cut(s)	213, 255, 498
FspBI	CTAG	2 cut(s)	150, 435
GluI	GCNGC	3 cut(s)	213, 255, 498
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	166, 197
Hin1II	CATG	4 cut(s)	43, 304, 362, 561
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	2 cut(s)	166, 197
HphI	GGTGA	2 cut(s)	254, 382
Hpy166II	GTNNAC	3 cut(s)	25, 245, 445
Hpy188I	TCNGA	3 cut(s)	15, 400, 427
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	3 cut(s)	25, 245, 445
HpyAV	CCTTC	5 cut(s)	91, 153, 228, 364, 403
HpyCH4V	TGCA	4 cut(s)	146, 179, 257, 380
HpyF3I	CTNAG	3 cut(s)	54, 230, 277
Hsp92II	CATG	4 cut(s)	43, 304, 362, 561
KpnI	GGTACC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	172, 348
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	3 cut(s)	199, 241, 484
LweI	GCATC	2 cut(s)	199, 536
MaeI	CTAG	2 cut(s)	150, 435
MaeIII	GTNAC	4 cut(s)	126, 290, 469, 549
MalI	GATC	2 cut(s)	174, 350
MboI	GATC	2 cut(s)	172, 348
MboII	GAAGA	1 cut(s)	440
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	2 cut(s)	330, 421
MnlI	CCTC	4 cut(s)	111, 318, 424, 433
MslI	CAYNNNNRTG	4 cut(s)	42, 286, 483, 556
MspI	CCGG	2 cut(s)	166, 197
MspR9I	CCNGG	3 cut(s)	197, 261, 317
MvaI	CCWGG	2 cut(s)	261, 317
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	2 cut(s)	358, 557
NdeII	GATC	2 cut(s)	172, 348
NlaIII	CATG	4 cut(s)	43, 304, 362, 561
NlaIV	GGNNCC	3 cut(s)	164, 194, 201
NmuCI	GTSAC	3 cut(s)	126, 290, 549
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	214, 256, 499
Psp6I	CCWGG	2 cut(s)	259, 315
PspGI	CCWGG	2 cut(s)	259, 315
PspN4I	GGNNCC	3 cut(s)	164, 194, 201
PspPI	GGNCC	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	2 cut(s)	194, 364
RsaNI	GTAC	2 cut(s)	193, 363
RseI	CAYNNNNRTG	4 cut(s)	42, 286, 483, 556
SatI	GCNGC	3 cut(s)	213, 255, 498
Sau3AI	GATC	2 cut(s)	172, 348
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	3 cut(s)	197, 261, 317
SetI	ASST	9 cut(s)	60, 95, 151, 205, 321, 395, 444, 457, 499
SfaNI	GCATC	2 cut(s)	199, 536
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	4 cut(s)	42, 286, 483, 556
Sse9I	AATT	2 cut(s)	330, 421
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	150, 435
StyD4I	CCNGG	3 cut(s)	195, 259, 315
StyI	CCWWGG	2 cut(s)	358, 557
TasI	AATT	2 cut(s)	330, 421
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	2 cut(s)	114, 225
TseFI	GTSAC	3 cut(s)	126, 290, 549
TseI	GCWGC	3 cut(s)	212, 254, 497
Tsp45I	GTSAC	3 cut(s)	126, 290, 549
TspDTI	ATGAA	2 cut(s)	56, 83
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	114, 225
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	421
XmiI	GTMKAC	2 cut(s)	24, 444
XspI	CTAG	2 cut(s)	150, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.