Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0017079

Physical Location & Seq

Genomic Coordinates Forward (+)

5542440 .. 5543981

Gene Structure 1542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1041700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGCATCGACGCCTTGCCATTTTTACCCACCAAGTTCTTACAAATTCCAATTCTATCCTCCCCACCACCACCAAGCACAACAGCACCTTCTTCCTCTGCTCCCATTTCAACCCCTCATGTCACAGGGGCAATGGGTTCGCCTCAATTCGCTTACTTTCGTACTCTCCTGTGAACCGCCGCGTACCTGATCCCGAAGACCCCTCCAATTTGATAAAAGAAGATGGCGTTTCTGTTTTATCCCAAATGTGGATTGAGAATTTTCGTGAACCTGATAGGATTGTGACTAATTTGTCCTCTTACCTTCGCCGATTCGAGTTGTGGGTATTGGCGTACCAGAAGGTTTGCGCCGATGAGATGGGTGCGTATATGCCCCGCAGTGAAATACAGAGGTCAGCGCTTGAGGACTTGTTAGCTCTTCGTAATGCTGTTCTTGACAGTAGGTTTAGGTGGGGTGCTAGACTAGAGTTCTTTATTAAATCACCCAAGGATAAGACTGAATACGAGTCTTTGTCTAAGAGGAAAATTAAGGCCATTCTGACAACTACACAACCGGCCCCATTTCAAGATAAGTTAGTGCAGGAAGTTCTGTTAATGATTTTGGAGCCAATATATGAGGGTCGGTTCTCTCAAAAGTCATTTGCGTTTAGGCCAGGGAGGAATGCACATACAGTGTTGAGGGTGATTAGGAGGAGTTTTGCAGGGTACTTGTGGTATATAAAGGGCGATTTGAGTACTATCTTGGATGGGATGAAGGTGGGTTTGGTGATAAATGCTTTGATCAGGGATGTGAGGGATAAGAAGATCATTGATTTGGTGAAGGCAGCGTTGGTTACACCAGTGGTTACGAGTAAGGATGATGGAGTGGAGAAGAAGAAAAAGAAGAGAAAATATCAGAAGAAGAGGGTGTTGGCGGAGGATGAGCCGAAACCAGACCCATATTGGCTGGAGACTTTTTTTGGGTTTGCACCTGAGGAGGCAGAGAAGCTTCCTTCTTGGGGCCATTGTGGGATACTTAGCCCCCTTTTGGCTAATGTTTGTTTGGATGAACTGGACCGCTGGATGGAGGGGAAGATTAAGGACTTTTATCATCCGTCAAAGAGTGATGTCATATGGAATAGCCCGGAAGGTGAAGCAGAACATGGAAATACATCTTGGCCTGAATTTGTGCCAACAAGTGGCCCAGATAAGACCAGAAAGATGGATTACATTCGATATGGTGGTCATATTTTAATTGGTGTTCGAGGACCTCGATCAGATGCTGCCACATTGAGAAAACAGTTGATTGAGTTTGTTGATCAGAAGTATATGCTCAAGCTTGACAATGAGAGCCTCCCTATAGAACACATAACAAAGGGCATAATGTTTCTAGATCATGTGTTGTGTCGCAGAGTTGTGTACCCAACGCTTCGTTACACTGCTACNGAGGTGCTTGATTCTTTCTCCATGAAGCATTTTGCTCGATTAGCCTGTCTGTCCGCTCTCTGGTATTGTTCCCTAAGGGCTATCAAGTTCTCAAAGAAAGATAGAAAAGAATCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090615 GO:0140053 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

514

Amino Acids

59.2

Weight (kDa)

9.35

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46920
fragaria_vesca	FvH4_5g21000
malus_domestica	MD06G1041700.v1.1
prunus_persica	Prupe.5G048500_v2.0.a1
pyrus_communis	pycom06g03520
rosa_chinensis	RchiOBHm_Chr7g0208021
rosa_laevigata	RLG00000003262
rosa_roxburghii	Rroxscaffold_3G00250890
rosa_rugosa	Rorug07G0100900
rosa_samantha	Rh7AG235100 Rh7BG230400 Rh7CG250000 Rh7DG241000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	1175
AccBSI	CCGCTC	1 cut(s)	1478
AccII	CGCG	1 cut(s)	180
AciI	CCGC	6 cut(s)	175, 178, 373, 911, 1054, 1476
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	3 cut(s)	43, 256, 1160
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	6 cut(s)	161, 183, 332, 704, 733, 1397
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	6 cut(s)	246, 995, 1024, 1060, 1175, 1482
AgsI	TTSAA	2 cut(s)	109, 563
AjnI	CCWGG	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	8 cut(s)	743, 775, 809, 841, 890, 922, 1135, 1167
AluBI	AGCT	3 cut(s)	413, 985, 1315
AluI	AGCT	3 cut(s)	413, 985, 1315
Alw26I	GTCTC	1 cut(s)	941
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	1259
Aor51HI	AGCGCT	1 cut(s)	396
AoxI	GGCC	6 cut(s)	528, 552, 647, 997, 1154, 1177
ApeKI	GCWGC	2 cut(s)	821, 1259
ApoI	RAATTY	3 cut(s)	43, 256, 1160
AspLEI	GCGC	2 cut(s)	347, 397
AspS9I	GGNCC	5 cut(s)	553, 997, 1051, 1178, 1244
AsuC2I	CCSGG	1 cut(s)	1121
AsuHPI	GGTGA	5 cut(s)	471, 691, 775, 826, 1139
AvaII	GGWCC	2 cut(s)	1051, 1244
AxyI	CCTNAGG	2 cut(s)	969, 1496
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	833, 1246
BccI	CCATC	6 cut(s)	215, 349, 737, 851, 1054, 1192
BcgI	CGANNNNNNTGC	4 cut(s)	118, 152, 1439, 1473
BciT130I	CCWGG	1 cut(s)	651
BciVI	GTATCC	1 cut(s)	1002
BclI	TGATCA	2 cut(s)	777, 1294
BcnI	CCSGG	1 cut(s)	1121
BcoDI	GTCTC	1 cut(s)	941
BfaI	CTAG	3 cut(s)	456, 461, 1367
BfmI	CTRYAG	1 cut(s)	1335
BfoI	RGCGCY	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	1002
BisI	GCNGC	3 cut(s)	178, 822, 1260
BlsI	GCNGC	3 cut(s)	179, 823, 1261
BmcAI	AGTACT	1 cut(s)	733
Bme1390I	CCNGG	2 cut(s)	651, 1121
Bme18I	GGWCC	2 cut(s)	1051, 1244
BmgT120I	GGNCC	5 cut(s)	553, 997, 1051, 1178, 1244
BmiI	GGNNCC	3 cut(s)	555, 603, 998
BmrFI	CCNGG	2 cut(s)	651, 1121
BmsI	GCATC	2 cut(s)	13, 1246
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	965
BpuEI	CTTGAG	2 cut(s)	419, 1295
BpuMI	CCSGG	1 cut(s)	1121
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	483, 650
Bsc4I	CCNNNNNNNGG	6 cut(s)	246, 995, 1024, 1060, 1175, 1482
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	836, 1053
Bse21I	CCTNAGG	2 cut(s)	969, 1496
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	483, 650
BseGI	GGATG	8 cut(s)	748, 753, 790, 859, 922, 1048, 1065, 1087
BseLI	CCNNNNNNNGG	6 cut(s)	246, 995, 1024, 1060, 1175, 1482
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	2 cut(s)	836, 1053
BseRI	GAGGAG	2 cut(s)	703, 986
BseXI	GCAGC	2 cut(s)	833, 1246
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	6 cut(s)	530, 554, 649, 999, 1156, 1179
BsiSI	CCGG	2 cut(s)	551, 1121
BslI	CCNNNNNNNGG	6 cut(s)	246, 995, 1024, 1060, 1175, 1482
BsmAI	GTCTC	1 cut(s)	941
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	6 cut(s)	530, 554, 649, 999, 1156, 1179
Bsp143I	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
BspACI	CCGC	6 cut(s)	175, 178, 373, 911, 1054, 1476
BspANI	GGCC	6 cut(s)	530, 554, 649, 999, 1156, 1179
BspCNI	CTCAG	1 cut(s)	961
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	555, 603, 998
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	1478
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	836, 1053
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	2 cut(s)	483, 650
BssMI	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
BssNI	GRCGYC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	3 cut(s)	437, 670, 1278
Bst6I	CTCTTC	3 cut(s)	420, 875, 893
BstACI	GRCGYC	1 cut(s)	10
BstDEI	CTNAG	4 cut(s)	513, 969, 1013, 1496
BstF5I	GGATG	8 cut(s)	748, 753, 790, 859, 922, 1048, 1065, 1087
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	2 cut(s)	347, 397
BstKTI	GATC	6 cut(s)	190, 780, 804, 1253, 1297, 1372
BstMAI	GTCTC	1 cut(s)	941
BstMBI	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
BstMWI	GCNNNNNNNGC	1 cut(s)	1463
BstNI	CCWGG	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	649, 1119
BstSFI	CTRYAG	1 cut(s)	1335
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	833, 1246
BstV2I	GAAGAC	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	1198
Bsu36I	CCTNAGG	2 cut(s)	969, 1496
BsuI	GTATCC	1 cut(s)	1002
BsuRI	GGCC	6 cut(s)	530, 554, 649, 999, 1156, 1179
BtsCI	GGATG	8 cut(s)	748, 753, 790, 859, 922, 1048, 1065, 1087
BtsI	GCAGTG	2 cut(s)	382, 1413
BtsIMutI	CAGTG	4 cut(s)	382, 675, 843, 1413
CaiI	CAGNNNCTG	1 cut(s)	1259
CfoI	GCGC	2 cut(s)	347, 397
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	5 cut(s)	553, 997, 1051, 1178, 1244
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	6 cut(s)	160, 182, 331, 703, 732, 1396
CviAII	CATG	5 cut(s)	117, 1139, 1373, 1444, 1536
CviQI	GTAC	6 cut(s)	160, 182, 331, 703, 732, 1396
DdeI	CTNAG	4 cut(s)	513, 969, 1013, 1496
DpnI	GATC	6 cut(s)	189, 779, 803, 1252, 1296, 1371
DpnII	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	3 cut(s)	420, 875, 893
EarI	CTCTTC	3 cut(s)	420, 875, 893
EciI	GGCGGA	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	1051, 1244
Eco47III	AGCGCT	1 cut(s)	396
Eco81I	CCTNAGG	2 cut(s)	969, 1496
EcoO109I	RGGNCCY	1 cut(s)	1244
EcoRII	CCWGG	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	5 cut(s)	120, 1142, 1376, 1447, 1539
FatI	CATG	5 cut(s)	116, 1138, 1372, 1443, 1535
FauI	CCCGC	1 cut(s)	380
FauNDI	CATATG	1 cut(s)	1109
FbaI	TGATCA	2 cut(s)	777, 1294
Fnu4HI	GCNGC	3 cut(s)	178, 822, 1260
FokI	GGATG	8 cut(s)	755, 760, 797, 866, 929, 1055, 1072, 1074
Fsp4HI	GCNGC	3 cut(s)	178, 822, 1260
FspBI	CTAG	3 cut(s)	456, 461, 1367
GlaI	GCGC	2 cut(s)	346, 396
GluI	GCNGC	3 cut(s)	178, 822, 1260
GsuI	CTGGAG	1 cut(s)	965
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	6 cut(s)	530, 554, 649, 999, 1156, 1179
HapII	CCGG	2 cut(s)	551, 1121
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	347, 397
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	5 cut(s)	120, 1142, 1376, 1447, 1539
Hin6I	GCGC	2 cut(s)	345, 395
HinP1I	GCGC	2 cut(s)	345, 395
HindIII	AAGCTT	2 cut(s)	983, 1313
HinfI	GANTC	4 cut(s)	309, 503, 1433, 1532
HpaII	CCGG	2 cut(s)	551, 1121
HphI	GGTGA	5 cut(s)	471, 691, 775, 826, 1139
Hpy166II	GTNNAC	3 cut(s)	172, 266, 1396
Hpy188I	TCNGA	4 cut(s)	537, 894, 1255, 1299
Hpy188III	TCNNGA	5 cut(s)	191, 263, 431, 563, 1367
Hpy8I	GTNNAC	3 cut(s)	172, 266, 1396
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	7 cut(s)	97, 311, 331, 745, 811, 999, 1118
HpyCH4III	ACNGT	3 cut(s)	437, 670, 1278
HpyCH4V	TGCA	5 cut(s)	4, 577, 662, 698, 965
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1463
HpyF3I	CTNAG	4 cut(s)	513, 969, 1013, 1496
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	5 cut(s)	120, 1142, 1376, 1447, 1539
HspAI	GCGC	2 cut(s)	345, 395
Ksp22I	TGATCA	2 cut(s)	777, 1294
Kzo9I	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	2 cut(s)	104, 601
Lsp1109I	GCAGC	2 cut(s)	833, 1246
LweI	GCATC	2 cut(s)	13, 1246
MaeI	CTAG	3 cut(s)	456, 461, 1367
MaeIII	GTNAC	5 cut(s)	119, 280, 829, 841, 1409
MalI	GATC	6 cut(s)	189, 779, 803, 1252, 1296, 1371
MbiI	CCGCTC	1 cut(s)	1478
MboI	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
MluCI	AATT	9 cut(s)	43, 49, 144, 205, 256, 286, 522, 1160, 1230
MlyI	GAGTC	1 cut(s)	512
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	474, 525, 590, 1074, 1229
MspA1I	CMGCKG	1 cut(s)	1056
MspI	CCGG	2 cut(s)	551, 1121
MspR9I	CCNGG	2 cut(s)	651, 1121
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	651
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	1463
NciI	CCSGG	1 cut(s)	1121
NdeI	CATATG	1 cut(s)	1109
NdeII	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
NlaIII	CATG	5 cut(s)	120, 1142, 1376, 1447, 1539
NlaIV	GGNNCC	3 cut(s)	555, 603, 998
NmuCI	GTSAC	2 cut(s)	119, 280
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	1246
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	309, 1433, 1532
PflMI	CCANNNNNTGG	1 cut(s)	1175
PkrI	GCNGC	3 cut(s)	179, 823, 1261
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PpuMI	RGGWCCY	1 cut(s)	1244
Psp5II	RGGWCCY	1 cut(s)	1244
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	3 cut(s)	555, 603, 998
PspPI	GGNCC	5 cut(s)	553, 997, 1051, 1178, 1244
PspPPI	RGGWCCY	1 cut(s)	1244
PstNI	CAGNNNCTG	1 cut(s)	1259
RsaI	GTAC	6 cut(s)	161, 183, 332, 704, 733, 1397
RsaNI	GTAC	6 cut(s)	160, 182, 331, 703, 732, 1396
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	5 cut(s)	474, 525, 590, 1074, 1229
SatI	GCNGC	3 cut(s)	178, 822, 1260
Sau3AI	GATC	6 cut(s)	187, 777, 801, 1250, 1294, 1369
Sau96I	GGNCC	5 cut(s)	553, 997, 1051, 1178, 1244
ScaI	AGTACT	1 cut(s)	733
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	651, 1121
SfaNI	GCATC	2 cut(s)	13, 1246
SfcI	CTRYAG	1 cut(s)	1335
SinI	GGWCC	2 cut(s)	1051, 1244
SmlI	CTYRAG	2 cut(s)	398, 1310
SmoI	CTYRAG	2 cut(s)	398, 1310
Sse9I	AATT	9 cut(s)	43, 49, 144, 205, 256, 286, 522, 1160, 1230
SsiI	CCGC	6 cut(s)	175, 178, 373, 911, 1054, 1476
SspMI	CTAG	3 cut(s)	456, 461, 1367
StyD4I	CCNGG	2 cut(s)	649, 1119
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	437, 670, 1278
TaqI	TCGA	6 cut(s)	7, 312, 1210, 1240, 1249, 1459
TasI	AATT	9 cut(s)	43, 49, 144, 205, 256, 286, 522, 1160, 1230
TatI	WGTACW	1 cut(s)	731
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	309, 1433, 1532
Tru1I	TTAA	5 cut(s)	474, 525, 590, 1074, 1229
Tru9I	TTAA	5 cut(s)	474, 525, 590, 1074, 1229
TscAI	CASTG	4 cut(s)	382, 675, 843, 1420
TseFI	GTSAC	2 cut(s)	119, 280
TseI	GCWGC	2 cut(s)	821, 1259
Tsp45I	GTSAC	2 cut(s)	119, 280
TspDTI	ATGAA	3 cut(s)	764, 1059, 1460
TspGWI	ACGGA	1 cut(s)	1080
TspRI	CASTG	4 cut(s)	382, 675, 843, 1420
Van91I	CCANNNNNTGG	1 cut(s)	1175
VpaK11BI	GGWCC	2 cut(s)	1051, 1244
XapI	RAATTY	3 cut(s)	43, 256, 1160
XbaI	TCTAGA	1 cut(s)	1366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	936
XspI	CTAG	3 cut(s)	456, 461, 1367
ZrmI	AGTACT	1 cut(s)	733
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.