Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017079

Physical Location & Seq

Genomic Coordinates Forward (+)

44727065 .. 44729256

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGCATCGCCGCCTCTCCATTTTCACCCACAAGATTCTCACAAATCCCAATTGTATCCCCACCACCAAGCACACCACCAAAGTCAGCCCCTTTGGTTCTAGAACCAACAGGTTAGGTTTACTGCGATTACTTTCGTATACTCCATTGAATCGTCGCCCTGCTGATCCTGAAGACCCGTCCAATTTGATAAAGGAGGATGGGGTTTCGATTTTGTCCCAAATGTGGGTTGAGAATTTTCGAGAACCTGATAGGATTGTGACCAATTTGACCTCTTACATTCGGAGATTCGAGCTCTGGGTGTTGGCTTATCAGAAGGTCTGTGCCGACGATATGGGGGCTTATATGCCCCGAAGTTCGATACAGAGGTCGGCACTTGAGGACTTATTAGGACTTAGAAATGCTGTTCTTGATGGTAGGTTTAGGTGGGGAGCTAGGCTAGAGTTTTATATCAAGTCACCCAAGGATAAGACCGATTACGAGTCTTTGTCTAAGAGGAAAATAAAGGCCATTTTGACCACCACGCAACCATCCCCGTTTCAAGATAAGTTGGTTCAGGAGGTGTTGTTGATGGTGTTGGAGCCGATATATGAGTCTCGGTTCTCGCAGAAGTCGTTTGCATTTAGACCGGGGAGAAATGCACATACTGTGTTGAGGGTGATTAGGAGGAGTTTTGCAGGGTATTTGTGGTATATAAAGGGGGATTTGAGTACAGTGTTGGATGGGATGAAGGTGGGGTTGGTGATTAATGCTCTAATCAGGGATGTGAGGGATAAGAAGTCGAGGAAGTATCAGAAGAAGAGGGTGCTGGCAGAGGATGAACCGAAGCCAGACCCTTATTGGTTGGAGACATTTTTTGGGTTTGCTCCAGAGGAGGCAGAGAAGCTTCCTTCTTGGGGGCATTGTGGGATACTCAGTCCCCTTTTGGCTAATATTTGTCTAGATGAATTGGACCGCTGGATGGAGGGAAAGATTAAGGAGTTTTATCATCCGTCAAAGAGTGACGTCATATGGAATTGCCCAGAAGGAGAATCAGAACAGGGAAATACGTCTTGGCCTGAGTTTGTGCCAACAAGTGGGCCAGATAAGACCAGAAAGATGGATTATATAAGATATGGGGGTCATATTTTGATTGGTGTTCGAGGACCTCGAGCAGATGCAGCCACATTGAGAAAACAGTTGATTGAGTTCTGTGATCAAAAGTATATGCTCAAGCTAGACAATGAGAGCCTCCCTATAGAACACATAACTAAGGGTATACTGTTTCTTGATCATGTGTTGTGTCGCAGAGTTGTCTACCCAACGCTTCGTTACACTGCTACTGGTGGGAAAATTATTAGTGAGAAGGGTGTAGGCACTCTTTTATCAGTTACAGCAAGCTTGAAACAGTGCATAAAGCAATTTAGGAAACTGAGCTTTCTGAAGGGGGATAGGGATCCTGATCCACAGCCTTGTTTCAGAATGTTTCATGCCACTCAAGCTCATACTAATGCACAAATGAACAAGTTTCTGTCAACAATGGTCGAGTGGTATAGGTATGCAGATAATCGCAAAAAAGTTGTAAACTTTTGTGCTTACATTCTACGGGGTTCACTAGCAAAGCTTTATGCCGCAAAATACAAGCTCCGTTCACGTGCAAAGGTGTACAAGATTGGTGATAGGAATCTGAGTCGTCCTTTGAAGGAGAAGAAGGGGCAGTCACCCGAGTACCATAATTTGTTGAGGATGGGCCTTGTTGAGTCAATTGATGGGCTTCAGTATACCAGGATGTCTCTTGTACCTGAGACTGATTACACCCCTTTCCCGAGTAACTGGAGACCTGAACACGAGAAGGCATTGCTTGAATATATAAGGCTTGATGATCCAAAAACGTTAGAGGAGCAGCGCAGGTGTATCATGGATCAAGGTCTTGTTTCTCCTCAGGATTACATCTCAATGCTTGTTTGGAACTACAAGAGAAGTGCTATTCCGTTGGATCAGTTTACGTTTGTCAAAAATGGCAGCAGTGACATTGAAAGAGATAAGCAATTGCTGCTTGGCTCAAATCAGGATAACCATGAGAACAGAACTACAGAAGAGGAGGAAAAGGGTGAAGGGTTTTGTGTATCACAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090615 GO:0140053 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

704

Amino Acids

81.52

Weight (kDa)

9.33

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Intron_maturas2	PF01348	456 - 559	9.2e-08	Type II intron maturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46920
fragaria_vesca	FvH4_5g21000
malus_domestica	MD06G1041700.v1.1
prunus_persica	Prupe.5G048500_v2.0.a1
pyrus_communis	pycom06g03520
rosa_chinensis	RchiOBHm_Chr7g0208021
rosa_laevigata	RLG00000003262
rosa_roxburghii	Rroxscaffold_3G00250890
rosa_rugosa	Rorug07G0100900
rosa_samantha	Rh7AG235100 Rh7BG230400 Rh7CG250000 Rh7DG241000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1875
AatII	GACGTC	1 cut(s)	1005
Acc36I	ACCTGC	1 cut(s)	1875
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AccI	GTMKAC	4 cut(s)	137, 1255, 1293, 1757
AciI	CCGC	3 cut(s)	10, 952, 1608
AclI	AACGTT	1 cut(s)	1868
AclWI	GGATC	7 cut(s)	158, 1427, 1433, 1440, 1853, 1905, 1980
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	3 cut(s)	189, 1439, 1736
AcvI	CACGTG	1 cut(s)	1631
AcyI	GRCGYC	1 cut(s)	1002
AfaI	GTAC	4 cut(s)	709, 1643, 1706, 1776
AfiI	CCNNNNNNNGG	5 cut(s)	222, 223, 893, 958, 1073
AgsI	TTSAA	6 cut(s)	148, 539, 1381, 1678, 1841, 2012
AjnI	CCWGG	1 cut(s)	1760
AjuI	GAANNNNNNNTTGG	4 cut(s)	719, 751, 1033, 1065
AluBI	AGCT	9 cut(s)	292, 431, 883, 1213, 1377, 1413, 1478, 1600, 1621
AluI	AGCT	9 cut(s)	292, 431, 883, 1213, 1377, 1413, 1478, 1600, 1621
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	5 cut(s)	597, 839, 1773, 1775, 1807
AlwI	GGATC	7 cut(s)	158, 1427, 1433, 1440, 1853, 1905, 1980
Ama87I	CYCGRG	3 cut(s)	1146, 1700, 1801
AoxI	GGCC	4 cut(s)	504, 1052, 1076, 1726
ApeKI	GCWGC	4 cut(s)	1157, 1879, 1998, 2029
ApoI	RAATTY	1 cut(s)	232
AseI	ATTAAT	1 cut(s)	744
AspLEI	GCGC	1 cut(s)	1884
AspS9I	GGNCC	4 cut(s)	949, 1076, 1142, 1726
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	7 cut(s)	16, 447, 667, 751, 1664, 1689, 2099
AvaI	CYCGRG	3 cut(s)	1146, 1700, 1801
AvaII	GGWCC	2 cut(s)	949, 1142
AxyI	CCTNAGG	1 cut(s)	1917
BaeI	ACNNNNGTAYC	4 cut(s)	350, 383, 1688, 1721
BamHI	GGATCC	1 cut(s)	1432
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	1823
BbrPI	CACGTG	1 cut(s)	1631
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	1169, 1891, 2010, 2016
BccI	CCATC	9 cut(s)	191, 404, 535, 562, 713, 952, 1090, 1717, 1739
BciT130I	CCWGG	1 cut(s)	1762
BciVI	GTATCC	2 cut(s)	65, 900
BclI	TGATCA	2 cut(s)	1192, 1267
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	5 cut(s)	597, 839, 1773, 1775, 1807
BfaI	CTAG	6 cut(s)	99, 432, 437, 938, 1214, 1592
BfmI	CTRYAG	2 cut(s)	1233, 2067
BfuAI	ACCTGC	1 cut(s)	1875
BfuI	GTATCC	2 cut(s)	65, 900
BisI	GCNGC	6 cut(s)	10, 1158, 1608, 1880, 1999, 2030
BlsI	GCNGC	6 cut(s)	11, 1159, 1609, 1881, 2000, 2031
Bme1390I	CCNGG	2 cut(s)	627, 1762
Bme18I	GGWCC	2 cut(s)	949, 1142
BmeT110I	CYCGRG	3 cut(s)	1146, 1700, 1801
BmgT120I	GGNCC	4 cut(s)	949, 1076, 1142, 1726
BmiI	GGNNCC	2 cut(s)	579, 1434
BmrFI	CCNGG	2 cut(s)	627, 1762
BmsI	GCATC	2 cut(s)	13, 1144
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	2 cut(s)	849, 1831
BpuEI	CTTGAG	3 cut(s)	395, 1193, 1458
BpuMI	CCSGG	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	1631
BsaBI	GATNNNNATC	3 cut(s)	1431, 1437, 1659
BsaHI	GRCGYC	1 cut(s)	1002
BsaI	GGTCTC	1 cut(s)	1807
BsaJI	CCNNGG	2 cut(s)	459, 626
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	5 cut(s)	222, 223, 893, 958, 1073
Bse1I	ACTGG	2 cut(s)	1324, 1814
Bse21I	CCTNAGG	1 cut(s)	1917
Bse3DI	GCAATG	1 cut(s)	1832
Bse8I	GATNNNNATC	3 cut(s)	1431, 1437, 1659
BseBI	CCWGG	1 cut(s)	1762
BseDI	CCNNGG	2 cut(s)	459, 626
BseJI	GATNNNNATC	3 cut(s)	1431, 1437, 1659
BseLI	CCNNNNNNNGG	5 cut(s)	222, 223, 893, 958, 1073
BseMI	GCAATG	1 cut(s)	1832
BseMII	CTCAG	6 cut(s)	925, 1047, 1400, 1655, 1770, 1931
BseNI	ACTGG	2 cut(s)	1324, 1814
BseRI	GAGGAG	5 cut(s)	679, 884, 1889, 1905, 2090
BseXI	GCAGC	4 cut(s)	1169, 1891, 2010, 2016
BshFI	GGCC	4 cut(s)	506, 1054, 1078, 1728
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	3 cut(s)	1146, 1700, 1801
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	199, 900
BslI	CCNNNNNNNGG	5 cut(s)	222, 223, 893, 958, 1073
BsmAI	GTCTC	5 cut(s)	597, 839, 1773, 1775, 1807
BsmFI	GGGAC	2 cut(s)	199, 900
BsnI	GGCC	4 cut(s)	506, 1054, 1078, 1728
Bso31I	GGTCTC	1 cut(s)	1807
BsoBI	CYCGRG	3 cut(s)	1146, 1700, 1801
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	1641
Bsp143I	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
BspACI	CCGC	3 cut(s)	10, 952, 1608
BspANI	GGCC	4 cut(s)	506, 1054, 1078, 1728
BspCNI	CTCAG	6 cut(s)	924, 1048, 1401, 1656, 1771, 1930
BspLI	GGNNCC	2 cut(s)	579, 1434
BspMI	ACCTGC	1 cut(s)	1875
BspPI	GGATC	7 cut(s)	158, 1427, 1433, 1440, 1853, 1905, 1980
BspTNI	GGTCTC	1 cut(s)	1807
BsrDI	GCAATG	1 cut(s)	1832
BsrGI	TGTACA	1 cut(s)	1641
BsrI	ACTGG	2 cut(s)	1324, 1814
BssECI	CCNNGG	2 cut(s)	459, 626
BssMI	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
BssNAI	GTATAC	3 cut(s)	138, 1256, 1758
BssNI	GRCGYC	1 cut(s)	1002
BssSI	CACGAG	1 cut(s)	1823
BssT1I	CCWWGG	1 cut(s)	459
Bst1107I	GTATAC	3 cut(s)	138, 1256, 1758
Bst2BI	CACGAG	1 cut(s)	1823
Bst2UI	CCWGG	1 cut(s)	1762
Bst4CI	ACNGT	5 cut(s)	646, 712, 1176, 1260, 1386
Bst6I	CTCTTC	2 cut(s)	791, 2067
BstACI	GRCGYC	1 cut(s)	1002
BstAPI	GCANNNNNTGC	1 cut(s)	2029
BstAUI	TGTACA	1 cut(s)	1641
BstBAI	YACGTR	1 cut(s)	1631
BstC8I	GCNNGC	2 cut(s)	807, 1375
BstDEI	CTNAG	9 cut(s)	392, 489, 911, 1056, 1248, 1409, 1664, 1779, 1917
BstHHI	GCGC	1 cut(s)	1884
BstKTI	GATC	8 cut(s)	166, 1195, 1270, 1435, 1441, 1861, 1900, 1975
BstMAI	GTCTC	5 cut(s)	597, 839, 1773, 1775, 1807
BstMBI	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
BstMWI	GCNNNNNNNGC	3 cut(s)	1157, 1475, 2029
BstNI	CCWGG	1 cut(s)	1762
BstSCI	CCNGG	2 cut(s)	625, 1760
BstSFI	CTRYAG	2 cut(s)	1233, 2067
BstV1I	GCAGC	4 cut(s)	1169, 1891, 2010, 2016
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	1432
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1432
BstZ17I	GTATAC	3 cut(s)	138, 1256, 1758
Bsu36I	CCTNAGG	1 cut(s)	1917
BsuI	GTATCC	2 cut(s)	65, 900
BsuRI	GGCC	4 cut(s)	506, 1054, 1078, 1728
BtsI	GCAGTG	2 cut(s)	1311, 2008
BtsIMutI	CAGTG	4 cut(s)	717, 1311, 1391, 2008
BveI	ACCTGC	1 cut(s)	1875
Cac8I	GCNNGC	2 cut(s)	807, 1375
CfoI	GCGC	1 cut(s)	1884
Cfr13I	GGNCC	4 cut(s)	949, 1076, 1142, 1726
Csp6I	GTAC	4 cut(s)	708, 1642, 1705, 1775
CviAII	CATG	4 cut(s)	1271, 1466, 1894, 2054
CviQI	GTAC	4 cut(s)	708, 1642, 1705, 1775
DdeI	CTNAG	9 cut(s)	392, 489, 911, 1056, 1248, 1409, 1664, 1779, 1917
DpnI	GATC	8 cut(s)	165, 1194, 1269, 1434, 1440, 1860, 1899, 1974
DpnII	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
Eam1104I	CTCTTC	2 cut(s)	791, 2067
EarI	CTCTTC	2 cut(s)	791, 2067
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	1807
Eco47I	GGWCC	2 cut(s)	949, 1142
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	3 cut(s)	189, 1439, 1736
Eco72I	CACGTG	1 cut(s)	1631
Eco81I	CCTNAGG	1 cut(s)	1917
Eco88I	CYCGRG	3 cut(s)	1146, 1700, 1801
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoRII	CCWGG	1 cut(s)	1760
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	4 cut(s)	1274, 1469, 1897, 2057
FaqI	GGGAC	2 cut(s)	199, 900
FatI	CATG	4 cut(s)	1270, 1465, 1893, 2053
FauNDI	CATATG	1 cut(s)	1007
FbaI	TGATCA	2 cut(s)	1192, 1267
FblI	GTMKAC	4 cut(s)	137, 1255, 1293, 1757
Fnu4HI	GCNGC	6 cut(s)	10, 1158, 1608, 1880, 1999, 2030
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	6 cut(s)	10, 1158, 1608, 1880, 1999, 2030
FspBI	CTAG	6 cut(s)	99, 432, 437, 938, 1214, 1592
GlaI	GCGC	1 cut(s)	1883
GluI	GCNGC	6 cut(s)	10, 1158, 1608, 1880, 1999, 2030
GsuI	CTGGAG	2 cut(s)	849, 1831
HaeIII	GGCC	4 cut(s)	506, 1054, 1078, 1728
HapII	CCGG	1 cut(s)	626
HhaI	GCGC	1 cut(s)	1884
Hin1I	GRCGYC	1 cut(s)	1002
Hin1II	CATG	4 cut(s)	1274, 1469, 1897, 2057
Hin6I	GCGC	1 cut(s)	1882
HinP1I	GCGC	1 cut(s)	1882
HincII	GTYRAC	1 cut(s)	1512
HindII	GTYRAC	1 cut(s)	1512
HindIII	AAGCTT	3 cut(s)	881, 1375, 1598
HinfI	GANTC	9 cut(s)	34, 148, 285, 479, 590, 1028, 1660, 1666, 1736
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	7 cut(s)	16, 447, 667, 751, 1664, 1689, 2099
Hpy188I	TCNGA	7 cut(s)	282, 312, 792, 1033, 1419, 1457, 1665
Hpy99I	CGWCG	2 cut(s)	156, 329
HpyCH4III	ACNGT	5 cut(s)	646, 712, 1176, 1260, 1386
HpyCH4IV	ACGT	5 cut(s)	1002, 1046, 1630, 1868, 1982
HpyCH4V	TGCA	9 cut(s)	4, 617, 638, 674, 1157, 1389, 1490, 1538, 1634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1157, 1475, 2029
HpyF3I	CTNAG	9 cut(s)	392, 489, 911, 1056, 1248, 1409, 1664, 1779, 1917
HpySE526I	ACGT	5 cut(s)	1002, 1046, 1630, 1868, 1982
Hsp92I	GRCGYC	1 cut(s)	1002
Hsp92II	CATG	4 cut(s)	1274, 1469, 1897, 2057
HspAI	GCGC	1 cut(s)	1882
Ksp22I	TGATCA	2 cut(s)	1192, 1267
Kzo9I	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
LmnI	GCTCC	5 cut(s)	428, 577, 868, 1626, 1876
Lsp1109I	GCAGC	4 cut(s)	1169, 1891, 2010, 2016
LweI	GCATC	2 cut(s)	13, 1144
MaeI	CTAG	6 cut(s)	99, 432, 437, 938, 1214, 1592
MaeII	ACGT	5 cut(s)	1002, 1046, 1630, 1868, 1982
MaeIII	GTNAC	8 cut(s)	256, 453, 998, 1307, 1366, 1695, 1805, 2003
MalI	GATC	8 cut(s)	165, 1194, 1269, 1434, 1440, 1860, 1899, 1974
MboI	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
MboII	GAAGA	5 cut(s)	182, 805, 808, 1696, 2084
MfeI	CAATTG	4 cut(s)	49, 1740, 2024, 2108
MflI	RGATCY	1 cut(s)	1432
MhlI	GDGCHC	1 cut(s)	294
MlyI	GAGTC	4 cut(s)	488, 599, 1675, 1745
MmeI	TCCRAC	4 cut(s)	555, 696, 822, 1950
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	744, 972
MslI	CAYNNNNRTG	2 cut(s)	1485, 1931
MspA1I	CMGCKG	1 cut(s)	954
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	627, 1762
MunI	CAATTG	4 cut(s)	49, 1740, 2024, 2108
MvaI	CCWGG	1 cut(s)	1762
MwoI	GCNNNNNNNGC	3 cut(s)	1157, 1475, 2029
NciI	CCSGG	1 cut(s)	627
NdeI	CATATG	1 cut(s)	1007
NdeII	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
NlaIII	CATG	4 cut(s)	1274, 1469, 1897, 2057
NlaIV	GGNNCC	2 cut(s)	579, 1434
NmuCI	GTSAC	5 cut(s)	256, 453, 998, 1695, 2003
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	1146
PaqCI	CACCTGC	1 cut(s)	1875
PcsI	WCGNNNNNNNCGW	2 cut(s)	608, 1144
PfeI	GAWTC	5 cut(s)	34, 148, 285, 1028, 1660
PflMI	CCANNNNNTGG	1 cut(s)	1073
PkrI	GCNGC	6 cut(s)	11, 1159, 1609, 1881, 2000, 2031
PleI	GAGTC	4 cut(s)	487, 598, 1674, 1744
PmaCI	CACGTG	1 cut(s)	1631
PmlI	CACGTG	1 cut(s)	1631
PpsI	GAGTC	4 cut(s)	487, 598, 1674, 1744
Ppu21I	YACGTR	1 cut(s)	1631
PpuMI	RGGWCCY	1 cut(s)	1142
PshBI	ATTAAT	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	1868
Psp5II	RGGWCCY	1 cut(s)	1142
Psp6I	CCWGG	1 cut(s)	1760
PspCI	CACGTG	1 cut(s)	1631
PspGI	CCWGG	1 cut(s)	1760
PspN4I	GGNNCC	2 cut(s)	579, 1434
PspPI	GGNCC	4 cut(s)	949, 1076, 1142, 1726
PspPPI	RGGWCCY	1 cut(s)	1142
PspXI	VCTCGAGB	1 cut(s)	1146
PsuI	RGATCY	1 cut(s)	1432
RsaI	GTAC	4 cut(s)	709, 1643, 1706, 1776
RsaNI	GTAC	4 cut(s)	708, 1642, 1705, 1775
RseI	CAYNNNNRTG	2 cut(s)	1485, 1931
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	744, 972
SatI	GCNGC	6 cut(s)	10, 1158, 1608, 1880, 1999, 2030
Sau3AI	GATC	8 cut(s)	163, 1192, 1267, 1432, 1438, 1858, 1897, 1972
Sau96I	GGNCC	4 cut(s)	949, 1076, 1142, 1726
SchI	GAGTC	4 cut(s)	488, 599, 1675, 1745
ScrFI	CCNGG	2 cut(s)	627, 1762
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	13, 1144
SfcI	CTRYAG	2 cut(s)	1233, 2067
Sfr274I	CTCGAG	1 cut(s)	1146
SinI	GGWCC	2 cut(s)	949, 1142
SlaI	CTCGAG	1 cut(s)	1146
SmiMI	CAYNNNNRTG	2 cut(s)	1485, 1931
SmlI	CTYRAG	4 cut(s)	374, 1146, 1208, 1473
SmoI	CTYRAG	4 cut(s)	374, 1146, 1208, 1473
SsiI	CCGC	3 cut(s)	10, 952, 1608
SspI	AATATT	1 cut(s)	931
SspMI	CTAG	6 cut(s)	99, 432, 437, 938, 1214, 1592
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	625, 1760
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	5 cut(s)	646, 712, 1176, 1260, 1386
TaiI	ACGT	5 cut(s)	1005, 1049, 1633, 1871, 1985
TaqI	TCGA	8 cut(s)	206, 238, 288, 356, 779, 1138, 1147, 1521
TaqII	GACCGA	1 cut(s)	485
TatI	WGTACW	2 cut(s)	707, 1641
TauI	GCSGC	2 cut(s)	12, 1610
TfiI	GAWTC	5 cut(s)	34, 148, 285, 1028, 1660
Tru1I	TTAA	2 cut(s)	744, 972
Tru9I	TTAA	2 cut(s)	744, 972
TscAI	CASTG	4 cut(s)	717, 1318, 1391, 2008
TseFI	GTSAC	5 cut(s)	256, 453, 998, 1695, 2003
TseI	GCWGC	4 cut(s)	1157, 1879, 1998, 2029
Tsp45I	GTSAC	5 cut(s)	256, 453, 998, 1695, 2003
TspDTI	ATGAA	5 cut(s)	740, 831, 957, 1454, 1511
TspGWI	ACGGA	3 cut(s)	978, 1613, 1956
TspRI	CASTG	4 cut(s)	717, 1318, 1391, 2008
Van91I	CCANNNNNTGG	1 cut(s)	1073
VpaK11BI	GGWCC	2 cut(s)	949, 1142
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	1 cut(s)	232
XbaI	TCTAGA	2 cut(s)	98, 937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	834
XhoI	CTCGAG	1 cut(s)	1146
XmiI	GTMKAC	4 cut(s)	137, 1255, 1293, 1757
XspI	CTAG	6 cut(s)	99, 432, 437, 938, 1214, 1592
ZraI	GACGTC	1 cut(s)	1003
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.