Mitochondrial protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46920 |
| fragaria_vesca | FvH4_5g21000 |
| malus_domestica | MD06G1041700.v1.1 |
| prunus_persica | Prupe.5G048500_v2.0.a1 |
| pyrus_communis | pycom06g03520 |
| rosa_chinensis | RchiOBHm_Chr7g0208021 |
| rosa_laevigata | RLG00000003262 |
| rosa_roxburghii | Rroxscaffold_3G00250890 |
| rosa_rugosa | Rorug07G0100900 |
| rosa_samantha | Rh7AG235100 Rh7BG230400 Rh7CG250000 Rh7DG241000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 289 |
| AccI | GTMKAC | 1 cut(s) | 1859 |
| AccII | CGCG | 1 cut(s) | 1732 |
| AciI | CCGC | 9 cut(s) | 10, 178, 307, 373, 660, 821, 1054, 1176, 1260 |
| AclWI | GGATC | 6 cut(s) | 182, 1529, 1542, 1955, 2007, 2082 |
| AcoI | YGGCCR | 1 cut(s) | 179 |
| AcsI | RAATTY | 5 cut(s) | 43, 256, 464, 1160, 1762 |
| AcuI | CTGAAG | 3 cut(s) | 213, 1541, 1838 |
| AfaI | GTAC | 8 cut(s) | 332, 704, 733, 1304, 1397, 1745, 1808, 1878 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 128, 246, 957, 995, 1060, 1175 |
| AgsI | TTSAA | 7 cut(s) | 109, 563, 817, 1483, 1780, 2034, 2162 |
| AjnI | CCWGG | 3 cut(s) | 649, 1862, 2148 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 809, 841, 890, 922, 1135, 1167 |
| AluBI | AGCT | 8 cut(s) | 395, 985, 1315, 1479, 1515, 1580, 1702, 1723 |
| AluI | AGCT | 8 cut(s) | 395, 985, 1315, 1479, 1515, 1580, 1702, 1723 |
| Alw26I | GTCTC | 4 cut(s) | 941, 1875, 1877, 1909 |
| AlwI | GGATC | 6 cut(s) | 182, 1529, 1542, 1955, 2007, 2082 |
| Ama87I | CYCGRG | 1 cut(s) | 1248 |
| AoxI | GGCC | 7 cut(s) | 126, 179, 528, 647, 822, 1154, 1177 |
| ApeKI | GCWGC | 5 cut(s) | 392, 586, 1709, 1981, 2103 |
| ApoI | RAATTY | 5 cut(s) | 43, 256, 464, 1160, 1762 |
| AseI | ATTAAT | 1 cut(s) | 2109 |
| AspA2I | CCTAGG | 1 cut(s) | 122 |
| AspS9I | GGNCC | 4 cut(s) | 126, 1051, 1178, 1244 |
| AsuC2I | CCSGG | 2 cut(s) | 619, 1121 |
| AsuHPI | GGTGA | 8 cut(s) | 16, 181, 471, 691, 775, 814, 1139, 2007 |
| AvaI | CYCGRG | 1 cut(s) | 1248 |
| AvaII | GGWCC | 2 cut(s) | 1051, 1244 |
| AvrII | CCTAGG | 1 cut(s) | 122 |
| AxyI | CCTNAGG | 2 cut(s) | 969, 2019 |
| BamHI | GGATCC | 1 cut(s) | 1534 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| BbvI | GCAGC | 5 cut(s) | 404, 573, 1721, 1993, 2115 |
| BciT130I | CCWGG | 3 cut(s) | 651, 1864, 2150 |
| BciVI | GTATCC | 1 cut(s) | 1002 |
| BclI | TGATCA | 5 cut(s) | 210, 777, 840, 1294, 1921 |
| BcnI | CCSGG | 2 cut(s) | 619, 1121 |
| BcoDI | GTCTC | 4 cut(s) | 941, 1875, 1877, 1909 |
| BfaI | CTAG | 6 cut(s) | 123, 456, 461, 1040, 1367, 1758 |
| BfmI | CTRYAG | 2 cut(s) | 1335, 1971 |
| BfuI | GTATCC | 1 cut(s) | 1002 |
| BlnI | CCTAGG | 1 cut(s) | 122 |
| Bme1390I | CCNGG | 5 cut(s) | 619, 651, 1121, 1864, 2150 |
| Bme18I | GGWCC | 2 cut(s) | 1051, 1244 |
| BmeT110I | CYCGRG | 1 cut(s) | 1248 |
| BmgT120I | GGNCC | 4 cut(s) | 126, 1051, 1178, 1244 |
| BmiI | GGNNCC | 2 cut(s) | 603, 1536 |
| BmrFI | CCNGG | 5 cut(s) | 619, 651, 1121, 1864, 2150 |
| BmsI | GCATC | 4 cut(s) | 13, 1246, 1500, 2001 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 379, 411 |
| BpmI | CTGGAG | 1 cut(s) | 1933 |
| BpuEI | CTTGAG | 2 cut(s) | 419, 1295 |
| BpuMI | CCSGG | 2 cut(s) | 619, 1121 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1533 |
| BsaI | GGTCTC | 2 cut(s) | 941, 1909 |
| BsaJI | CCNNGG | 6 cut(s) | 122, 483, 650, 825, 1240, 2085 |
| BsaWI | WCCGGW | 1 cut(s) | 166 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 128, 246, 957, 995, 1060, 1175 |
| Bse118I | RCCGGY | 2 cut(s) | 128, 174 |
| Bse1I | ACTGG | 4 cut(s) | 502, 836, 1426, 1916 |
| Bse21I | CCTNAGG | 2 cut(s) | 969, 2019 |
| Bse3DI | GCAATG | 1 cut(s) | 1934 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1533 |
| BseBI | CCWGG | 3 cut(s) | 651, 1864, 2150 |
| BseDI | CCNNGG | 6 cut(s) | 122, 483, 650, 825, 1240, 2085 |
| BseGI | GGATG | 8 cut(s) | 748, 790, 859, 922, 1065, 1087, 1830, 1872 |
| BseJI | GATNNNNATC | 1 cut(s) | 1533 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 128, 246, 957, 995, 1060, 1175 |
| BseMI | GCAATG | 1 cut(s) | 1934 |
| BseMII | CTCAG | 4 cut(s) | 960, 1794, 1872, 2033 |
| BseNI | ACTGG | 4 cut(s) | 502, 836, 1426, 1916 |
| BseRI | GAGGAG | 3 cut(s) | 703, 986, 1991 |
| BseXI | GCAGC | 5 cut(s) | 404, 573, 1721, 1993, 2115 |
| BseYI | CCCAGC | 1 cut(s) | 2137 |
| Bsh1236I | CGCG | 1 cut(s) | 1732 |
| BshFI | GGCC | 7 cut(s) | 128, 181, 530, 649, 824, 1156, 1179 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1248 |
| BsiSI | CCGG | 5 cut(s) | 129, 167, 175, 619, 1121 |
| BslFI | GGGAC | 3 cut(s) | 601, 760, 1002 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 128, 246, 957, 995, 1060, 1175 |
| BsmAI | GTCTC | 4 cut(s) | 941, 1875, 1877, 1909 |
| BsmFI | GGGAC | 3 cut(s) | 601, 760, 1002 |
| BsmI | GAATGC | 1 cut(s) | 2065 |
| BsnI | GGCC | 7 cut(s) | 128, 181, 530, 649, 824, 1156, 1179 |
| Bso31I | GGTCTC | 2 cut(s) | 941, 1909 |
| BsoBI | CYCGRG | 1 cut(s) | 1248 |
| Bsp1407I | TGTACA | 1 cut(s) | 1743 |
| BspACI | CCGC | 9 cut(s) | 10, 178, 307, 373, 660, 821, 1054, 1176, 1260 |
| BspANI | GGCC | 7 cut(s) | 128, 181, 530, 649, 824, 1156, 1179 |
| BspCNI | CTCAG | 4 cut(s) | 961, 1795, 1873, 2032 |
| BspFNI | CGCG | 1 cut(s) | 1732 |
| BspHI | TCATGA | 2 cut(s) | 1924, 2067 |
| BspLI | GGNNCC | 2 cut(s) | 603, 1536 |
| BspPI | GGATC | 6 cut(s) | 182, 1529, 1542, 1955, 2007, 2082 |
| BspTNI | GGTCTC | 2 cut(s) | 941, 1909 |
| BsrDI | GCAATG | 1 cut(s) | 1934 |
| BsrFI | RCCGGY | 2 cut(s) | 128, 174 |
| BsrGI | TGTACA | 1 cut(s) | 1743 |
| BsrI | ACTGG | 4 cut(s) | 502, 836, 1426, 1916 |
| BssAI | RCCGGY | 2 cut(s) | 128, 174 |
| BssECI | CCNNGG | 6 cut(s) | 122, 483, 650, 825, 1240, 2085 |
| BssNAI | GTATAC | 1 cut(s) | 1860 |
| BssT1I | CCWWGG | 4 cut(s) | 122, 483, 825, 2085 |
| Bst1107I | GTATAC | 1 cut(s) | 1860 |
| Bst2UI | CCWGG | 3 cut(s) | 651, 1864, 2150 |
| Bst4CI | ACNGT | 4 cut(s) | 437, 1278, 1488, 2199 |
| Bst6I | CTCTTC | 3 cut(s) | 875, 893, 2175 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 668 |
| BstAUI | TGTACA | 1 cut(s) | 1743 |
| BstC8I | GCNNGC | 3 cut(s) | 176, 1477, 1734 |
| BstDEI | CTNAG | 6 cut(s) | 849, 969, 1013, 1803, 1881, 2019 |
| BstF5I | GGATG | 8 cut(s) | 748, 790, 859, 922, 1065, 1087, 1830, 1872 |
| BstFNI | CGCG | 1 cut(s) | 1732 |
| BstMAI | GTCTC | 4 cut(s) | 941, 1875, 1877, 1909 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 668, 1259, 1577, 1729 |
| BstNI | CCWGG | 3 cut(s) | 651, 1864, 2150 |
| BstNSI | RCATGY | 1 cut(s) | 1309 |
| BstSCI | CCNGG | 5 cut(s) | 617, 649, 1119, 1862, 2148 |
| BstSFI | CTRYAG | 2 cut(s) | 1335, 1971 |
| BstUI | CGCG | 1 cut(s) | 1732 |
| BstV1I | GCAGC | 5 cut(s) | 404, 573, 1721, 1993, 2115 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BstX2I | RGATCY | 1 cut(s) | 1534 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1198, 1911 |
| BstYI | RGATCY | 1 cut(s) | 1534 |
| BstZ17I | GTATAC | 1 cut(s) | 1860 |
| Bsu36I | CCTNAGG | 2 cut(s) | 969, 2019 |
| BsuI | GTATCC | 1 cut(s) | 1002 |
| BsuRI | GGCC | 7 cut(s) | 128, 181, 530, 649, 824, 1156, 1179 |
| BtsCI | GGATG | 8 cut(s) | 748, 790, 859, 922, 1065, 1087, 1830, 1872 |
| BtsI | GCAGTG | 2 cut(s) | 382, 1413 |
| BtsIMutI | CAGTG | 4 cut(s) | 382, 843, 1413, 1493 |
| Cac8I | GCNNGC | 3 cut(s) | 176, 1477, 1734 |
| CciI | TCATGA | 2 cut(s) | 1924, 2067 |
| Cfr10I | RCCGGY | 2 cut(s) | 128, 174 |
| Cfr13I | GGNCC | 4 cut(s) | 126, 1051, 1178, 1244 |
| Csp6I | GTAC | 8 cut(s) | 331, 703, 732, 1303, 1396, 1744, 1807, 1877 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1603, 1638 |
| CviAII | CATG | 6 cut(s) | 1306, 1373, 1568, 1925, 1996, 2068 |
| CviQI | GTAC | 8 cut(s) | 331, 703, 732, 1303, 1396, 1744, 1807, 1877 |
| DdeI | CTNAG | 6 cut(s) | 849, 969, 1013, 1803, 1881, 2019 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 289 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 289 |
| EaeI | YGGCCR | 1 cut(s) | 179 |
| Eam1104I | CTCTTC | 3 cut(s) | 875, 893, 2175 |
| EarI | CTCTTC | 3 cut(s) | 875, 893, 2175 |
| Eco130I | CCWWGG | 4 cut(s) | 122, 483, 825, 2085 |
| Eco147I | AGGCCT | 1 cut(s) | 649 |
| Eco31I | GGTCTC | 2 cut(s) | 941, 1909 |
| Eco47I | GGWCC | 2 cut(s) | 1051, 1244 |
| Eco57I | CTGAAG | 3 cut(s) | 213, 1541, 1838 |
| Eco81I | CCTNAGG | 2 cut(s) | 969, 2019 |
| Eco88I | CYCGRG | 1 cut(s) | 1248 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1244 |
| EcoRI | GAATTC | 1 cut(s) | 464 |
| EcoRII | CCWGG | 3 cut(s) | 649, 1862, 2148 |
| EcoT14I | CCWWGG | 4 cut(s) | 122, 483, 825, 2085 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 4 cut(s) | 122, 483, 825, 2085 |
| FaeI | CATG | 6 cut(s) | 1309, 1376, 1571, 1928, 1999, 2071 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 518, 550, 573, 605, 809, 841, 1499, 1531 |
| FaqI | GGGAC | 3 cut(s) | 601, 760, 1002 |
| FatI | CATG | 6 cut(s) | 1305, 1372, 1567, 1924, 1995, 2067 |
| FauI | CCCGC | 1 cut(s) | 380 |
| FauNDI | CATATG | 1 cut(s) | 1109 |
| FbaI | TGATCA | 5 cut(s) | 210, 777, 840, 1294, 1921 |
| FblI | GTMKAC | 1 cut(s) | 1859 |
| FokI | GGATG | 8 cut(s) | 755, 797, 866, 929, 1072, 1074, 1837, 1879 |
| FspBI | CTAG | 6 cut(s) | 123, 456, 461, 1040, 1367, 1758 |
| GsaI | CCCAGC | 1 cut(s) | 2141 |
| GsuI | CTGGAG | 1 cut(s) | 1933 |
| HaeIII | GGCC | 7 cut(s) | 128, 181, 530, 649, 824, 1156, 1179 |
| HapII | CCGG | 5 cut(s) | 129, 167, 175, 619, 1121 |
| Hin1II | CATG | 6 cut(s) | 1309, 1376, 1571, 1928, 1999, 2071 |
| HincII | GTYRAC | 1 cut(s) | 1663 |
| HindII | GTYRAC | 1 cut(s) | 1663 |
| HindIII | AAGCTT | 3 cut(s) | 983, 1313, 1477 |
| HinfI | GANTC | 3 cut(s) | 614, 1768, 1838 |
| HpaI | GTTAAC | 1 cut(s) | 1663 |
| HpaII | CCGG | 5 cut(s) | 129, 167, 175, 619, 1121 |
| HphI | GGTGA | 8 cut(s) | 16, 181, 471, 691, 775, 814, 1139, 2007 |
| Hpy166II | GTNNAC | 6 cut(s) | 1396, 1614, 1663, 1691, 1744, 1860 |
| Hpy188I | TCNGA | 7 cut(s) | 894, 1241, 1299, 1521, 1559, 1650, 1804 |
| Hpy8I | GTNNAC | 6 cut(s) | 1396, 1614, 1663, 1691, 1744, 1860 |
| HpyCH4III | ACNGT | 4 cut(s) | 437, 1278, 1488, 2199 |
| HpyCH4IV | ACGT | 1 cut(s) | 1148 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 668, 1259, 1577, 1729 |
| HpyF3I | CTNAG | 6 cut(s) | 849, 969, 1013, 1803, 1881, 2019 |
| HpySE526I | ACGT | 1 cut(s) | 1148 |
| Hsp92II | CATG | 6 cut(s) | 1309, 1376, 1571, 1928, 1999, 2071 |
| KroI | GCCGGC | 1 cut(s) | 174 |
| KroNI | GCCGGC | 1 cut(s) | 176 |
| Ksp22I | TGATCA | 5 cut(s) | 210, 777, 840, 1294, 1921 |
| KspAI | GTTAAC | 1 cut(s) | 1663 |
| LmnI | GCTCC | 4 cut(s) | 104, 601, 1728, 1978 |
| Lsp1109I | GCAGC | 5 cut(s) | 404, 573, 1721, 1993, 2115 |
| LweI | GCATC | 4 cut(s) | 13, 1246, 1500, 2001 |
| MaeI | CTAG | 6 cut(s) | 123, 456, 461, 1040, 1367, 1758 |
| MaeII | ACGT | 1 cut(s) | 1148 |
| MaeIII | GTNAC | 3 cut(s) | 829, 1409, 1468 |
| MfeI | CAATTG | 1 cut(s) | 1842 |
| MflI | RGATCY | 1 cut(s) | 1534 |
| MlyI | GAGTC | 3 cut(s) | 623, 1777, 1847 |
| MmeI | TCCRAC | 4 cut(s) | 228, 291, 924, 1029 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroNI | GCCGGC | 1 cut(s) | 174 |
| MseI | TTAA | 4 cut(s) | 525, 1662, 1682, 2109 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1587, 2033 |
| MspA1I | CMGCKG | 1 cut(s) | 1056 |
| MspI | CCGG | 5 cut(s) | 129, 167, 175, 619, 1121 |
| MspR9I | CCNGG | 5 cut(s) | 619, 651, 1121, 1864, 2150 |
| MunI | CAATTG | 1 cut(s) | 1842 |
| Mva1269I | GAATGC | 1 cut(s) | 2065 |
| MvaI | CCWGG | 3 cut(s) | 651, 1864, 2150 |
| MvnI | CGCG | 1 cut(s) | 1732 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 668, 1259, 1577, 1729 |
| NaeI | GCCGGC | 1 cut(s) | 176 |
| NciI | CCSGG | 2 cut(s) | 619, 1121 |
| NdeI | CATATG | 1 cut(s) | 1109 |
| NgoMIV | GCCGGC | 1 cut(s) | 174 |
| NlaIII | CATG | 6 cut(s) | 1309, 1376, 1571, 1928, 1999, 2071 |
| NlaIV | GGNNCC | 2 cut(s) | 603, 1536 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 1309 |
| PaeR7I | CTCGAG | 1 cut(s) | 1248 |
| PagI | TCATGA | 2 cut(s) | 1924, 2067 |
| PceI | AGGCCT | 1 cut(s) | 649 |
| PctI | GAATGC | 1 cut(s) | 2065 |
| PdiI | GCCGGC | 1 cut(s) | 176 |
| PleI | GAGTC | 3 cut(s) | 622, 1776, 1846 |
| PpsI | GAGTC | 3 cut(s) | 622, 1776, 1846 |
| PpuMI | RGGWCCY | 1 cut(s) | 1244 |
| PshBI | ATTAAT | 1 cut(s) | 2109 |
| Psp5II | RGGWCCY | 1 cut(s) | 1244 |
| Psp6I | CCWGG | 3 cut(s) | 649, 1862, 2148 |
| PspFI | CCCAGC | 1 cut(s) | 2137 |
| PspGI | CCWGG | 3 cut(s) | 649, 1862, 2148 |
| PspN4I | GGNNCC | 2 cut(s) | 603, 1536 |
| PspPI | GGNCC | 4 cut(s) | 126, 1051, 1178, 1244 |
| PspPPI | RGGWCCY | 1 cut(s) | 1244 |
| PspXI | VCTCGAGB | 1 cut(s) | 1248 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 649, 681 |
| PsuI | RGATCY | 1 cut(s) | 1534 |
| RsaI | GTAC | 8 cut(s) | 332, 704, 733, 1304, 1397, 1745, 1808, 1878 |
| RsaNI | GTAC | 8 cut(s) | 331, 703, 732, 1303, 1396, 1744, 1807, 1877 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1587, 2033 |
| SaqAI | TTAA | 4 cut(s) | 525, 1662, 1682, 2109 |
| Sau96I | GGNCC | 4 cut(s) | 126, 1051, 1178, 1244 |
| SchI | GAGTC | 3 cut(s) | 623, 1777, 1847 |
| ScrFI | CCNGG | 5 cut(s) | 619, 651, 1121, 1864, 2150 |
| SfaNI | GCATC | 4 cut(s) | 13, 1246, 1500, 2001 |
| SfcI | CTRYAG | 2 cut(s) | 1335, 1971 |
| Sfr274I | CTCGAG | 1 cut(s) | 1248 |
| SinI | GGWCC | 2 cut(s) | 1051, 1244 |
| SlaI | CTCGAG | 1 cut(s) | 1248 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1587, 2033 |
| SmlI | CTYRAG | 3 cut(s) | 398, 1248, 1310 |
| SmoI | CTYRAG | 3 cut(s) | 398, 1248, 1310 |
| SseBI | AGGCCT | 1 cut(s) | 649 |
| SsiI | CCGC | 9 cut(s) | 10, 178, 307, 373, 660, 821, 1054, 1176, 1260 |
| SspMI | CTAG | 6 cut(s) | 123, 456, 461, 1040, 1367, 1758 |
| StuI | AGGCCT | 1 cut(s) | 649 |
| StyD4I | CCNGG | 5 cut(s) | 617, 649, 1119, 1862, 2148 |
| StyI | CCWWGG | 4 cut(s) | 122, 483, 825, 2085 |
| TaaI | ACNGT | 4 cut(s) | 437, 1278, 1488, 2199 |
| TaiI | ACGT | 1 cut(s) | 1151 |
| TaqI | TCGA | 4 cut(s) | 262, 1249, 1941, 2144 |
| TaqII | GACCGA | 1 cut(s) | 509 |
| TatI | WGTACW | 2 cut(s) | 1302, 1743 |
| TauI | GCSGC | 5 cut(s) | 12, 181, 824, 1179, 1262 |
| Tru1I | TTAA | 4 cut(s) | 525, 1662, 1682, 2109 |
| Tru9I | TTAA | 4 cut(s) | 525, 1662, 1682, 2109 |
| TscAI | CASTG | 4 cut(s) | 382, 843, 1420, 1493 |
| TseI | GCWGC | 5 cut(s) | 392, 586, 1709, 1981, 2103 |
| TspDTI | ATGAA | 4 cut(s) | 147, 933, 1556, 1613 |
| TspGWI | ACGGA | 2 cut(s) | 1080, 1715 |
| TspRI | CASTG | 4 cut(s) | 382, 843, 1420, 1493 |
| VpaK11BI | GGWCC | 2 cut(s) | 1051, 1244 |
| VspI | ATTAAT | 1 cut(s) | 2109 |
| XapI | RAATTY | 5 cut(s) | 43, 256, 464, 1160, 1762 |
| XbaI | TCTAGA | 2 cut(s) | 1039, 1366 |
| XceI | RCATGY | 1 cut(s) | 1309 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 936 |
| XhoI | CTCGAG | 1 cut(s) | 1248 |
| XmaJI | CCTAGG | 1 cut(s) | 122 |
| XmiI | GTMKAC | 1 cut(s) | 1859 |
| XspI | CTAG | 6 cut(s) | 123, 456, 461, 1040, 1367, 1758 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |