Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012148

Physical Location & Seq

Genomic Coordinates Forward (+)

6685244 .. 6687876

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1049200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCTACGTTATCTTCGTCCCTAGTGTTTCACAACCCACTTGTTTCACCATACCATTCGAAAATTGGATCACTTTCTGGCACCCAATCCAATTGGTTTCAATCTCCAATCAGAACCAGAACCAGAACAAAACCCAATTCTTGCTCAATCATCAAAGCTCAATCCGGTGCTCGCAGTGAAAACATTGTCATCGTCGGCGCCGGAATTGCTGGTCTTGCCACTGCACTCTCTCTTCACAGGCTTGGAGTTGGGTCGCTGGTGCTTGAACAAGCAGAGTCACTTCGAACTGGAGGAACATCACTCACCCTTTTCAAAAATGGGTGGCGAGTTCTGGATGCAATTGGAGTTGGAAACCATCTCAGGACTCAGTTTCTTGAAATTCAAGGGATGGTGGTAAAGACCGACAATGGAAGAGAGCTACGGTCTTTCAAGTTCAAAGAGGAAGATGAAAGCCAAGAGGTGCGTGCTGTAGAGAGGAGAATACTGCTGGAGACTCTTGCCAAAGAACTACCTCCGGGTGCGGTTCGTTTCTCTTCAAAGCTGGCAAAGATTGAAAAAACTGAAAATGGAGAAACTTTGTTGCAATTGTTGGATGGTACCCAGCTATATGCAAAGATAGTAATTGGATGTGATGGAATTCGATCTCCTATAGCTACGTGGATGGGGTTCCCTGAGCCTAAATATGTAGGGCATTGTGCTTTTCGTGGTCTTGCAAGTTACCCCGACGGGCAGCCATTTGAACCGAAGTTGAATCAAATCTATGGAAAGGGACAGCGTGCCGGTTTTCTTCCTATTTCTCCTACCAAAGTCTACTGGTTCGTCTGCTACAACAGAGCATCTCTAGGTCCGAAGATTACTGACGGGCCATTTTTAAAGAAGCAAGTTACCGAACTAGTTAAAGACTGGCCTTCGGACCTATTGAACATCATAGATTATACCCCGGATGACACAATCATTGGAACACCACTCGTAGACCGGTGGCTGTGGCCCGGTATCAGCCCTCCGGCTTCAGCAGGAAGAGTTGTGCTGGTAGGAGATGCATGGCATCCAATGACTCCGAATCTTGGGCAAGGTGCTTGTTGTGCTCTGGAAGATGCAGTAATTCTGGCAAGAAAGCTTGCGGGTGCCATCGAGTCAGGACCAGCGTCCGTAGAAGATGCTCTCAGCTCGTATGGAAGCGAGAGATGGCCACGCATCTTTCCGCTGACTGTACGTGCAAATCTTGTAGGGTCACTCCTACAGTGGGAGGACCCTGTTGTGTGTTTTTTTCGGAACAATGTCATCTTTCCCAAGCTTGTTAGGTTAGGACCATTGTTGGAGCACACAAATTTCGACTGTGAGCCTCTACAAACTTCAGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

455

Amino Acids

49.75

Weight (kDa)

8.68

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	62 - 224	6.4e-15	FAD binding domain
Lycopene_cycl	PF05834	62 - 250	4.3e-08	Lycopene cyclase protein
FAD_binding_3	PF01494	337 - 398	1.1e-09	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35660 AT2G35660 AT2G35660
fragaria_vesca	FvH4_5g20080
malus_domestica	MD06G1049200.v1.1
prunus_persica	Prupe.5G059700_v2.0.a1 Prupe.5G059700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0204941
rosa_laevigata	RLG00000003420
rosa_multiflora	Rmu_co8273435.1_g000001 Rmu_sc0002180.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252650
rosa_rugosa	Rorug07G0086700 Rorug07G0086800
rosa_samantha	Rh7AG217400 Rh7BG214300 Rh7CG230700 Rh7DG225000
rosa_wichuraiana	Rw7G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	4 cut(s)	80, 197, 596, 1124
AccI	GTMKAC	2 cut(s)	810, 972
AciI	CCGC	3 cut(s)	521, 1121, 1202
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	1187
AcsI	RAATTY	3 cut(s)	378, 636, 1327
AcuI	CTGAAG	2 cut(s)	993, 1338
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	598, 1212
AfiI	CCNNNNNNNGG	2 cut(s)	1064, 1243
AgeI	ACCGGT	1 cut(s)	975
AhlI	ACTAGT	1 cut(s)	892
AluBI	AGCT	8 cut(s)	158, 418, 541, 604, 653, 1117, 1167, 1294
AluI	AGCT	8 cut(s)	158, 418, 541, 604, 653, 1117, 1167, 1294
Alw21I	GWGCWC	3 cut(s)	172, 1087, 1323
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	4 cut(s)	863, 905, 986, 1187
ApeKI	GCWGC	1 cut(s)	730
ApoI	RAATTY	3 cut(s)	378, 636, 1327
AsiGI	ACCGGT	1 cut(s)	975
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	7 cut(s)	845, 863, 913, 987, 1139, 1249, 1307
AsuC2I	CCSGG	3 cut(s)	516, 941, 990
AsuHPI	GGTGA	2 cut(s)	39, 295
AsuII	TTCGAA	2 cut(s)	59, 283
AvaII	GGWCC	5 cut(s)	845, 913, 1139, 1249, 1307
BalI	TGGCCA	1 cut(s)	1189
BanI	GGYRCC	4 cut(s)	80, 197, 596, 1124
Bbv12I	GWGCWC	3 cut(s)	172, 1087, 1323
BbvI	GCAGC	1 cut(s)	742
BccI	CCATC	7 cut(s)	363, 382, 587, 626, 655, 1136, 1179
BcnI	CCSGG	3 cut(s)	516, 941, 990
BcoDI	GTCTC	1 cut(s)	485
BcuI	ACTAGT	1 cut(s)	892
BfaI	CTAG	3 cut(s)	23, 842, 893
BfmI	CTRYAG	3 cut(s)	468, 648, 1238
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	1 cut(s)	731
BlsI	GCNGC	1 cut(s)	732
Bme1390I	CCNGG	3 cut(s)	516, 941, 990
Bme18I	GGWCC	5 cut(s)	845, 913, 1139, 1249, 1307
BmgT120I	GGNCC	7 cut(s)	845, 863, 913, 987, 1139, 1249, 1307
BmiI	GGNNCC	6 cut(s)	82, 199, 598, 668, 1126, 1251
BmrFI	CCNGG	3 cut(s)	516, 941, 990
BmsI	GCATC	7 cut(s)	325, 845, 1027, 1054, 1084, 1147, 1203
BoxI	GACNNNNGTC	1 cut(s)	1144
BpmI	CTGGAG	2 cut(s)	309, 509
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	2 cut(s)	59, 283
BpuMI	CCSGG	3 cut(s)	516, 941, 990
BsaAI	YACGTR	2 cut(s)	657, 1214
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	939
BsaWI	WCCGGW	2 cut(s)	164, 975
Bsc4I	CCNNNNNNNGG	2 cut(s)	1064, 1243
Bse118I	RCCGGY	2 cut(s)	779, 975
Bse1I	ACTGG	3 cut(s)	292, 818, 908
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	7 cut(s)	340, 393, 598, 632, 666, 949, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	1064, 1243
BseMII	CTCAG	4 cut(s)	373, 380, 663, 1177
BseNI	ACTGG	3 cut(s)	292, 818, 908
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	742
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	865, 907, 988, 1189
BshNI	GGYRCC	4 cut(s)	80, 197, 596, 1124
BshTI	ACCGGT	1 cut(s)	975
BsiHKAI	GWGCWC	3 cut(s)	172, 1087, 1323
BsiSI	CCGG	8 cut(s)	165, 201, 515, 780, 941, 976, 990, 1004
BslFI	GGGAC	2 cut(s)	4, 783
BslI	CCNNNNNNNGG	2 cut(s)	1064, 1243
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	4, 783
BsnI	GGCC	4 cut(s)	865, 907, 988, 1189
Bsp119I	TTCGAA	2 cut(s)	59, 283
Bsp1286I	GDGCHC	3 cut(s)	172, 1087, 1323
Bsp143I	GATC	2 cut(s)	68, 641
BspACI	CCGC	3 cut(s)	521, 1121, 1202
BspANI	GGCC	4 cut(s)	865, 907, 988, 1189
BspCNI	CTCAG	4 cut(s)	372, 379, 664, 1176
BspLI	GGNNCC	6 cut(s)	82, 199, 598, 668, 1126, 1251
BspPI	GGATC	1 cut(s)	76
BspT104I	TTCGAA	2 cut(s)	59, 283
BspT107I	GGYRCC	4 cut(s)	80, 197, 596, 1124
BsrFI	RCCGGY	2 cut(s)	779, 975
BsrI	ACTGG	3 cut(s)	292, 818, 908
BssAI	RCCGGY	2 cut(s)	779, 975
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	2 cut(s)	68, 641
BssNI	GRCGYC	1 cut(s)	198
Bst4CI	ACNGT	4 cut(s)	423, 1210, 1242, 1337
Bst6I	CTCTTC	4 cut(s)	237, 406, 538, 1012
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	2 cut(s)	657, 1214
BstBI	TTCGAA	2 cut(s)	59, 283
BstC8I	GCNNGC	5 cut(s)	172, 465, 543, 777, 1119
BstDEI	CTNAG	4 cut(s)	359, 366, 672, 1163
BstF5I	GGATG	7 cut(s)	340, 393, 598, 632, 666, 949, 1045
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	71, 644
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	68, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 215, 1082
BstPAI	GACNNNNGTC	1 cut(s)	1144
BstSCI	CCNGG	3 cut(s)	514, 939, 988
BstSFI	CTRYAG	3 cut(s)	468, 648, 1238
BstV1I	GCAGC	1 cut(s)	742
BsuRI	GGCC	4 cut(s)	865, 907, 988, 1189
BtsCI	GGATG	7 cut(s)	340, 393, 598, 632, 666, 949, 1045
BtsI	GCAGTG	2 cut(s)	181, 219
BtsIMutI	CAGTG	3 cut(s)	181, 219, 1247
Cac8I	GCNNGC	5 cut(s)	172, 465, 543, 777, 1119
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	2 cut(s)	779, 975
Cfr13I	GGNCC	7 cut(s)	845, 863, 913, 987, 1139, 1249, 1307
CseI	GACGC	1 cut(s)	1134
Csp6I	GTAC	2 cut(s)	597, 1211
CspAI	ACCGGT	1 cut(s)	975
CviAII	CATG	1 cut(s)	1041
CviQI	GTAC	2 cut(s)	597, 1211
DdeI	CTNAG	4 cut(s)	359, 366, 672, 1163
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	2 cut(s)	70, 643
DpnII	GATC	2 cut(s)	68, 641
DraI	TTTAAA	1 cut(s)	873
EaeI	YGGCCR	1 cut(s)	1187
Eam1104I	CTCTTC	4 cut(s)	237, 406, 538, 1012
EarI	CTCTTC	4 cut(s)	237, 406, 538, 1012
Eco47I	GGWCC	5 cut(s)	845, 913, 1139, 1249, 1307
Eco57I	CTGAAG	2 cut(s)	993, 1338
EcoO109I	RGGNCCY	1 cut(s)	1249
EcoRI	GAATTC	1 cut(s)	636
EcoT22I	ATGCAT	1 cut(s)	1042
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaeI	CATG	1 cut(s)	1044
FaqI	GGGAC	2 cut(s)	4, 783
FatI	CATG	1 cut(s)	1040
FauI	CCCGC	1 cut(s)	1114
FblI	GTMKAC	2 cut(s)	810, 972
Fnu4HI	GCNGC	1 cut(s)	731
FokI	GGATG	7 cut(s)	347, 400, 605, 639, 673, 956, 1032
Fsp4HI	GCNGC	1 cut(s)	731
FspBI	CTAG	3 cut(s)	23, 842, 893
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	731
GsaI	CCCAGC	1 cut(s)	604
GsuI	CTGGAG	2 cut(s)	309, 509
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	865, 907, 988, 1189
HapII	CCGG	8 cut(s)	165, 201, 515, 780, 941, 976, 990, 1004
HgaI	GACGC	1 cut(s)	1134
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	1044
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	2 cut(s)	1115, 1292
HinfI	GANTC	7 cut(s)	275, 364, 493, 751, 1054, 1060, 1133
HpaII	CCGG	8 cut(s)	165, 201, 515, 780, 941, 976, 990, 1004
HphI	GGTGA	2 cut(s)	39, 295
Hpy166II	GTNNAC	2 cut(s)	811, 973
Hpy188I	TCNGA	5 cut(s)	113, 849, 913, 1059, 1272
Hpy188III	TCNNGA	5 cut(s)	332, 361, 374, 1088, 1137
Hpy8I	GTNNAC	2 cut(s)	811, 973
Hpy99I	CGWCG	2 cut(s)	197, 728
HpyAV	CCTTC	1 cut(s)	918
HpyCH4III	ACNGT	4 cut(s)	423, 1210, 1242, 1337
HpyCH4IV	ACGT	3 cut(s)	8, 656, 1213
HpyCH4V	TGCA	8 cut(s)	224, 338, 583, 611, 713, 1040, 1097, 1217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 215, 1082
HpyF3I	CTNAG	4 cut(s)	359, 366, 672, 1163
HpySE526I	ACGT	3 cut(s)	8, 656, 1213
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	1044
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	600
Kzo9I	GATC	2 cut(s)	68, 641
LmnI	GCTCC	1 cut(s)	1318
Lsp1109I	GCAGC	1 cut(s)	742
LweI	GCATC	7 cut(s)	325, 845, 1027, 1054, 1084, 1147, 1203
MaeI	CTAG	3 cut(s)	23, 842, 893
MaeII	ACGT	3 cut(s)	8, 656, 1213
MaeIII	GTNAC	4 cut(s)	276, 716, 883, 1230
MalI	GATC	2 cut(s)	70, 643
MboI	GATC	2 cut(s)	68, 641
MfeI	CAATTG	3 cut(s)	91, 339, 584
MhlI	GDGCHC	3 cut(s)	172, 1087, 1323
MlsI	TGGCCA	1 cut(s)	1189
MluNI	TGGCCA	1 cut(s)	1189
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	5 cut(s)	284, 358, 487, 1048, 1142
MmeI	TCCRAC	3 cut(s)	328, 570, 1296
MnlI	CCTC	8 cut(s)	284, 433, 451, 468, 522, 1011, 1240, 1353
Mox20I	TGGCCA	1 cut(s)	1189
Mph1103I	ATGCAT	1 cut(s)	1042
MscI	TGGCCA	1 cut(s)	1189
MseI	TTAA	2 cut(s)	872, 897
Msp20I	TGGCCA	1 cut(s)	1189
MspA1I	CMGCKG	1 cut(s)	1204
MspI	CCGG	8 cut(s)	165, 201, 515, 780, 941, 976, 990, 1004
MspR9I	CCNGG	3 cut(s)	516, 941, 990
MunI	CAATTG	3 cut(s)	91, 339, 584
MwoI	GCNNNNNNNGC	3 cut(s)	206, 215, 1082
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	3 cut(s)	516, 941, 990
NdeII	GATC	2 cut(s)	68, 641
NlaIII	CATG	1 cut(s)	1044
NlaIV	GGNNCC	6 cut(s)	82, 199, 598, 668, 1126, 1251
NmuCI	GTSAC	2 cut(s)	276, 1230
NsiI	ATGCAT	1 cut(s)	1042
NspV	TTCGAA	2 cut(s)	59, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	751, 1060
PinAI	ACCGGT	1 cut(s)	975
PkrI	GCNGC	1 cut(s)	732
PleI	GAGTC	5 cut(s)	283, 358, 487, 1048, 1141
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	5 cut(s)	283, 358, 487, 1048, 1141
Ppu21I	YACGTR	2 cut(s)	657, 1214
PpuMI	RGGWCCY	1 cut(s)	1249
PshAI	GACNNNNGTC	1 cut(s)	1144
Psp5II	RGGWCCY	1 cut(s)	1249
PspFI	CCCAGC	1 cut(s)	600
PspN4I	GGNNCC	6 cut(s)	82, 199, 598, 668, 1126, 1251
PspPI	GGNCC	7 cut(s)	845, 863, 913, 987, 1139, 1249, 1307
PspPPI	RGGWCCY	1 cut(s)	1249
RsaI	GTAC	2 cut(s)	598, 1212
RsaNI	GTAC	2 cut(s)	597, 1211
SaqAI	TTAA	2 cut(s)	872, 897
SatI	GCNGC	1 cut(s)	731
Sau3AI	GATC	2 cut(s)	68, 641
Sau96I	GGNCC	7 cut(s)	845, 863, 913, 987, 1139, 1249, 1307
SchI	GAGTC	5 cut(s)	284, 358, 487, 1048, 1142
ScrFI	CCNGG	3 cut(s)	516, 941, 990
SduI	GDGCHC	3 cut(s)	172, 1087, 1323
SfaNI	GCATC	7 cut(s)	325, 845, 1027, 1054, 1084, 1147, 1203
SfcI	CTRYAG	3 cut(s)	468, 648, 1238
SfoI	GGCGCC	1 cut(s)	199
SfuI	TTCGAA	2 cut(s)	59, 283
SinI	GGWCC	5 cut(s)	845, 913, 1139, 1249, 1307
SpeI	ACTAGT	1 cut(s)	892
SsiI	CCGC	3 cut(s)	521, 1121, 1202
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	23, 842, 893
StyD4I	CCNGG	3 cut(s)	514, 939, 988
TaaI	ACNGT	4 cut(s)	423, 1210, 1242, 1337
TaiI	ACGT	3 cut(s)	11, 659, 1216
TaqI	TCGA	5 cut(s)	59, 283, 640, 1131, 1332
TaqII	GACCGA	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	751, 1060
Tru1I	TTAA	2 cut(s)	872, 897
Tru9I	TTAA	2 cut(s)	872, 897
TscAI	CASTG	3 cut(s)	181, 226, 1247
TseFI	GTSAC	2 cut(s)	276, 1230
TseI	GCWGC	1 cut(s)	730
Tsp45I	GTSAC	2 cut(s)	276, 1230
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	1138
TspRI	CASTG	3 cut(s)	181, 226, 1247
VpaK11BI	GGWCC	5 cut(s)	845, 913, 1139, 1249, 1307
XapI	RAATTY	3 cut(s)	378, 636, 1327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmiI	GTMKAC	2 cut(s)	810, 972
XspI	CTAG	3 cut(s)	23, 842, 893
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.