Prupe.5G059700_v2.0.a1

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012148
Physical Location & Seq
Forward (+)
6434105 .. 6436795
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059700.1

Sequence Viewer

Length: 1365 bp
ATGGCTACAGTGTCTATGTCCCTAGTCTTTCAAAACCCACTTCTTTCACCATACCATTCTAAAACTAGGCCACTTCCTCGCAACCAATCTAATTGGTTTCAAGCTCCAACAAGAACCAGAACCAAACCCACTTCTTTTTCAAGCATCCGAGCTCAATCTGGTGCTGCTGCTCGCAAGGAGGATATTGTCATAGTTGGCGCTGGAATTGCTGGTCTTGCCACTGCACTCTCTCTTCACAGGCTTGGAGTTGGGTCCTTGGTGCTTGAGCAAGCAGAATCACTTCGTACTGGGGGAACTTCACTCACCCTTTTCAAAAATGGGTGGCGAGTTTTGGATGCAATGGGAGTTGGAAATGATCTCAGAACCCAATTTCTTGAAATTCAAGGGATGGTGGTAAAGACAGAAGATGGAAGGGAGCTACGCTCCTTCAAGTTCAAAGATGAAGATGAAAGCCAAGAGGTGCGTCCTGTGGAGAGGGGAATACTGCTGGAGACTCTTGCCAATCAACTGCCAGCGGGCGCAGTTCGGTTCTCTTCAAAGCTGGCGAAGATTCAAAAAACTGAAAATGGAGAAACTTTGTTGGAACTAGTAGATGGTACTCAGCTATCTGCAAAGGTTGTAATCGGTTGTGATGGGATTCGGTCTCCTATAGCTAAGTGGATGGGTTTTCCTGAGCCTAAGTATGTTGGTCATTGTGCTTTTCGTGGCCTTGCATATTACCCTGGTGGGCAGCCATTTGAACCAAAACTGAATCAAATTTATGGAAGGGGCCAACGTGCAGGATTTCTTCCTGTTTCTCCAACAAAAGTCTACTGGTTTGTCTGCTTCAACAGACAATCTCCAGGTCCAAAAATTACTGATCCGTCTGTGTTAAAGAAGCAAGCTACAGAACTAGTCAGAGACTGGCCTTCAGACCTCGTGAACATCATAGACAATACCCCGGATGACTTGATCATACGAACACCACTCGTAGACCGGTGGCTGTGGCCGAACATCAGCCCTCCAGTTTCAGCAGGAAGTGTTGTGCTGGTAGGAGATGCATGGCATCCAATGACCCCTAATCTTGGTCAAGGGGCTTGTTGTGCTCTTGAAGATGCAGTAGTTCTGGCAAGAAAGCTTGCAGGTGCTATCAAGTCACGACCAGATACCATTGGAGATGCTCTCAGCTCATATGGAAGTGAGAGATGGCCTCGCATCTTTCCGCTAACGGTTCGTGCAAATCTTGTAGGGTCACTCTTGCAGTGGGAGAACCCTGTTGTGTGTTCTGTTCGGAACAATGTCATCTTCCCCAAGCTTGTTAGGTTAGGACCATTGTTGGAGCATACAAATTTTGACTGTGAGCCTCTACAAGCTCCAGTTGTGTAA

Protein Analysis

455

Amino Acids

49.8

Weight (kDa)

9.19

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35660 AT2G35660 AT2G35660
fragaria_vesca FvH4_5g20080
malus_domestica MD06G1049200.v1.1
prunus_persica Prupe.5G059700_v2.0.a1 Prupe.5G059700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0204941
rosa_laevigata RLG00000003420
rosa_multiflora Rmu_co8273435.1_g000001 Rmu_sc0002180.1_g000002
rosa_roxburghii Rroxscaffold_3G00252650
rosa_rugosa Rorug07G0086700 Rorug07G0086800
rosa_samantha Rh7AG217400 Rh7BG214300 Rh7CG230700 Rh7DG225000
rosa_wichuraiana Rw7G018860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1112
Acc36I ACCTGC 1 cut(s) 1112
AccI GTMKAC 2 cut(s) 810, 972
AciI CCGC 2 cut(s) 515, 1202
AclWI GGATC 1 cut(s) 854
AcoI YGGCCR 1 cut(s) 986
AcsI RAATTY 3 cut(s) 378, 756, 1327
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 2 cut(s) 286, 598
AfiI CCNNNNNNNGG 1 cut(s) 1064
AgeI ACCGGT 1 cut(s) 975
AhlI ACTAGT 2 cut(s) 586, 892
AjnI CCWGG 2 cut(s) 721, 841
Alw21I GWGCWC 2 cut(s) 154, 1087
Alw26I GTCTC 3 cut(s) 485, 648, 894
AlwI GGATC 1 cut(s) 854
AlwNI CAGNNNCTG 1 cut(s) 903
AoxI GGCC 6 cut(s) 68, 706, 769, 905, 986, 1187
ApeKI GCWGC 3 cut(s) 164, 167, 730
ApoI RAATTY 3 cut(s) 378, 756, 1327
AsiGI ACCGGT 1 cut(s) 975
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 2 cut(s) 200, 521
AspS9I GGNCC 4 cut(s) 252, 769, 845, 1307
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 2 cut(s) 39, 295
AvaII GGWCC 3 cut(s) 252, 845, 1307
BanII GRGCYC 1 cut(s) 154
BauI CACGAG 1 cut(s) 917
Bbv12I GWGCWC 2 cut(s) 154, 1087
BbvI GCAGC 3 cut(s) 151, 154, 742
BccI CCATC 6 cut(s) 382, 401, 587, 626, 655, 1179
BciT130I CCWGG 2 cut(s) 723, 843
BclI TGATCA 1 cut(s) 951
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 3 cut(s) 485, 648, 894
BcuI ACTAGT 2 cut(s) 586, 892
BfaI CTAG 4 cut(s) 23, 66, 587, 893
BfmI CTRYAG 3 cut(s) 6, 648, 885
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 1112
BisI GCNGC 3 cut(s) 165, 168, 731
BlsI GCNGC 3 cut(s) 166, 169, 732
Bme1390I CCNGG 3 cut(s) 723, 843, 941
Bme18I GGWCC 3 cut(s) 252, 845, 1307
BmgT120I GGNCC 4 cut(s) 252, 769, 845, 1307
BmiI GGNNCC 2 cut(s) 253, 770
BmrFI CCNGG 3 cut(s) 723, 843, 941
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 7 cut(s) 153, 325, 1027, 1054, 1084, 1147, 1203
BmuI ACTGGG 1 cut(s) 297
BplI GAGNNNNNCTC 6 cut(s) 407, 439, 1146, 1178, 1174, 1206
BpmI CTGGAG 4 cut(s) 509, 825, 987, 1338
Bpu10I CCTNAGC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 941
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 3 cut(s) 255, 721, 939
BsaWI WCCGGW 1 cut(s) 975
Bsc4I CCNNNNNNNGG 1 cut(s) 1064
Bse118I RCCGGY 1 cut(s) 975
Bse1I ACTGG 5 cut(s) 292, 818, 908, 1004, 1355
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 723, 843
BseDI CCNNGG 3 cut(s) 255, 721, 939
BseGI GGATG 6 cut(s) 144, 340, 393, 666, 949, 1045
BseLI CCNNNNNNNGG 1 cut(s) 1064
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 4 cut(s) 373, 614, 663, 1177
BseNI ACTGG 5 cut(s) 292, 818, 908, 1004, 1355
BseXI GCAGC 3 cut(s) 151, 154, 742
BsgI GTGCAG 2 cut(s) 207, 798
BshFI GGCC 6 cut(s) 70, 708, 771, 907, 988, 1189
BshTI ACCGGT 1 cut(s) 975
BsiHKAI GWGCWC 2 cut(s) 154, 1087
BsiSI CCGG 2 cut(s) 941, 976
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 1064
BsmAI GTCTC 3 cut(s) 485, 648, 894
BsmFI GGGAC 1 cut(s) 4
BsnI GGCC 6 cut(s) 70, 708, 771, 907, 988, 1189
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 154, 1087
Bsp143I GATC 3 cut(s) 355, 859, 951
BspACI CCGC 2 cut(s) 515, 1202
BspANI GGCC 6 cut(s) 70, 708, 771, 907, 988, 1189
BspCNI CTCAG 4 cut(s) 372, 613, 664, 1176
BspLI GGNNCC 2 cut(s) 253, 770
BspMI ACCTGC 1 cut(s) 1112
BspPI GGATC 1 cut(s) 854
BspTNI GGTCTC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 975
BsrI ACTGG 5 cut(s) 292, 818, 908, 1004, 1355
BssAI RCCGGY 1 cut(s) 975
BssECI CCNNGG 3 cut(s) 255, 721, 939
BssMI GATC 3 cut(s) 355, 859, 951
BssSI CACGAG 1 cut(s) 917
BssT1I CCWWGG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 917
Bst2UI CCWGG 2 cut(s) 723, 843
Bst4CI ACNGT 3 cut(s) 10, 1210, 1337
Bst6I CTCTTC 2 cut(s) 237, 538
BstC8I GCNNGC 7 cut(s) 172, 270, 513, 517, 543, 882, 1119
BstDEI CTNAG 6 cut(s) 359, 600, 654, 672, 678, 1163
BstF5I GGATG 6 cut(s) 144, 340, 393, 666, 949, 1045
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 200, 521
BstKTI GATC 3 cut(s) 358, 862, 954
BstMAI GTCTC 3 cut(s) 485, 648, 894
BstMBI GATC 3 cut(s) 355, 859, 951
BstMWI GCNNNNNNNGC 3 cut(s) 206, 215, 1082
BstNI CCWGG 2 cut(s) 723, 843
BstSCI CCNGG 3 cut(s) 721, 841, 939
BstSFI CTRYAG 3 cut(s) 6, 648, 885
BstV1I GCAGC 3 cut(s) 151, 154, 742
BsuRI GGCC 6 cut(s) 70, 708, 771, 907, 988, 1189
BtsCI GGATG 6 cut(s) 144, 340, 393, 666, 949, 1045
BtsI GCAGTG 2 cut(s) 219, 1247
BtsIMutI CAGTG 3 cut(s) 15, 219, 1247
BveI ACCTGC 1 cut(s) 1112
Cac8I GCNNGC 7 cut(s) 172, 270, 513, 517, 543, 882, 1119
CaiI CAGNNNCTG 1 cut(s) 903
CfoI GCGC 2 cut(s) 200, 521
Cfr10I RCCGGY 1 cut(s) 975
Cfr13I GGNCC 4 cut(s) 252, 769, 845, 1307
CseI GACGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 285, 597
CspAI ACCGGT 1 cut(s) 975
CviAII CATG 1 cut(s) 1041
CviQI GTAC 2 cut(s) 285, 597
DdeI CTNAG 6 cut(s) 359, 600, 654, 672, 678, 1163
DpnI GATC 3 cut(s) 357, 861, 953
DpnII GATC 3 cut(s) 355, 859, 951
EaeI YGGCCR 1 cut(s) 986
Eam1104I CTCTTC 2 cut(s) 237, 538
EarI CTCTTC 2 cut(s) 237, 538
Ecl136II GAGCTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 648
Eco47I GGWCC 3 cut(s) 252, 845, 1307
Eco53kI GAGCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 721, 841
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 1042
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 1044
FaqI GGGAC 1 cut(s) 4
FatI CATG 1 cut(s) 1040
FauI CCCGC 1 cut(s) 508
FauNDI CATATG 1 cut(s) 1171
FbaI TGATCA 1 cut(s) 951
FblI GTMKAC 2 cut(s) 810, 972
Fnu4HI GCNGC 3 cut(s) 165, 168, 731
FokI GGATG 6 cut(s) 131, 347, 400, 673, 956, 1032
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 165, 168, 731
FspBI CTAG 4 cut(s) 23, 66, 587, 893
GlaI GCGC 2 cut(s) 199, 520
GluI GCNGC 3 cut(s) 165, 168, 731
GsuI CTGGAG 4 cut(s) 509, 825, 987, 1338
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 6 cut(s) 70, 708, 771, 907, 988, 1189
HapII CCGG 2 cut(s) 941, 976
HgaI GACGC 1 cut(s) 452
HhaI GCGC 2 cut(s) 200, 521
Hin1II CATG 1 cut(s) 1044
Hin6I GCGC 2 cut(s) 198, 519
HinP1I GCGC 2 cut(s) 198, 519
HindIII AAGCTT 2 cut(s) 1115, 1292
HinfI GANTC 5 cut(s) 275, 493, 550, 637, 751
HpaII CCGG 2 cut(s) 941, 976
HphI GGTGA 2 cut(s) 39, 295
Hpy166II GTNNAC 3 cut(s) 811, 922, 973
Hpy188I TCNGA 5 cut(s) 149, 362, 899, 913, 1272
Hpy188III TCNNGA 5 cut(s) 374, 671, 919, 1088, 1137
Hpy8I GTNNAC 3 cut(s) 811, 922, 973
HpyAV CCTTC 4 cut(s) 405, 436, 759, 918
HpyCH4III ACNGT 3 cut(s) 10, 1210, 1337
HpyCH4IV ACGT 1 cut(s) 775
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 215, 1082
HpyF3I CTNAG 6 cut(s) 359, 600, 654, 672, 678, 1163
HpySE526I ACGT 1 cut(s) 775
Hsp92II CATG 1 cut(s) 1044
HspAI GCGC 2 cut(s) 198, 519
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 3 cut(s) 355, 859, 951
LmnI GCTCC 5 cut(s) 109, 415, 428, 1318, 1357
Lsp1109I GCAGC 3 cut(s) 151, 154, 742
LweI GCATC 7 cut(s) 153, 325, 1027, 1054, 1084, 1147, 1203
MaeI CTAG 4 cut(s) 23, 66, 587, 893
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 2 cut(s) 1134, 1230
MalI GATC 3 cut(s) 357, 861, 953
MboI GATC 3 cut(s) 355, 859, 951
MboII GAAGA 8 cut(s) 224, 416, 455, 525, 559, 779, 1103, 1276
MhlI GDGCHC 2 cut(s) 154, 1087
MluCI AATT 7 cut(s) 91, 204, 368, 378, 756, 852, 1327
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 5 cut(s) 131, 328, 561, 824, 1296
MnlI CCTC 8 cut(s) 87, 172, 451, 468, 926, 1011, 1200, 1353
Mph1103I ATGCAT 1 cut(s) 1042
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 872
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 2 cut(s) 941, 976
MspR9I CCNGG 3 cut(s) 723, 843, 941
MvaI CCWGG 2 cut(s) 723, 843
MwoI GCNNNNNNNGC 3 cut(s) 206, 215, 1082
NciI CCSGG 1 cut(s) 941
NdeI CATATG 1 cut(s) 1171
NdeII GATC 3 cut(s) 355, 859, 951
NlaIII CATG 1 cut(s) 1044
NlaIV GGNNCC 2 cut(s) 253, 770
NmuCI GTSAC 2 cut(s) 1134, 1230
NsiI ATGCAT 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 1112
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 4 cut(s) 275, 550, 637, 751
PinAI ACCGGT 1 cut(s) 975
PkrI GCNGC 3 cut(s) 166, 169, 732
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 721, 841
PspGI CCWGG 2 cut(s) 721, 841
PspN4I GGNNCC 2 cut(s) 253, 770
PspPI GGNCC 4 cut(s) 252, 769, 845, 1307
PspPPI RGGWCCY 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 903
RsaI GTAC 2 cut(s) 286, 598
RsaNI GTAC 2 cut(s) 285, 597
SacI GAGCTC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 872
SatI GCNGC 3 cut(s) 165, 168, 731
Sau3AI GATC 3 cut(s) 355, 859, 951
Sau96I GGNCC 4 cut(s) 252, 769, 845, 1307
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 3 cut(s) 723, 843, 941
SduI GDGCHC 2 cut(s) 154, 1087
SfaNI GCATC 7 cut(s) 153, 325, 1027, 1054, 1084, 1147, 1203
SfcI CTRYAG 3 cut(s) 6, 648, 885
SinI GGWCC 3 cut(s) 252, 845, 1307
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 2 cut(s) 586, 892
Sse9I AATT 7 cut(s) 91, 204, 368, 378, 756, 852, 1327
SsiI CCGC 2 cut(s) 515, 1202
SspMI CTAG 4 cut(s) 23, 66, 587, 893
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 3 cut(s) 721, 841, 939
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 3 cut(s) 10, 1210, 1337
TaiI ACGT 1 cut(s) 778
TaqII GACCGA 1 cut(s) 630
TasI AATT 7 cut(s) 91, 204, 368, 378, 756, 852, 1327
TfiI GAWTC 4 cut(s) 275, 550, 637, 751
Tru1I TTAA 1 cut(s) 872
Tru9I TTAA 1 cut(s) 872
TscAI CASTG 3 cut(s) 15, 226, 1247
TseFI GTSAC 2 cut(s) 1134, 1230
TseI GCWGC 3 cut(s) 164, 167, 730
Tsp45I GTSAC 2 cut(s) 1134, 1230
TspDTI ATGAA 2 cut(s) 456, 462
TspGWI ACGGA 1 cut(s) 852
TspRI CASTG 3 cut(s) 15, 226, 1247
VpaK11BI GGWCC 3 cut(s) 252, 845, 1307
XapI RAATTY 3 cut(s) 378, 756, 1327
XmiI GTMKAC 2 cut(s) 810, 972
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 4 cut(s) 23, 66, 587, 893
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.