MD06G1062800.v1.1
WRKY Family

Plant zinc cluster domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016930
Physical Location & Seq
Reverse (-)
10770799 .. 10772691
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1062800.v1.1.491

Sequence Viewer

Length: 957 bp
ATGGAAAGGGAATCAGGTGTCTGTCTTTCAAGGAACCCAGGAATGGATTTCACAATTCATGAGGTTGCTCAAAGCAGTTTGAAGCATGCCCATCGCCTCTTTGGTTGCATCTCTGAGAAAAAGCATAAGAGAAGTGCTCAAGAAGTAAGCCTGTTTGCTCAAGATGCAGTAAACGAATTCCGCAAACTGCTTACTCTCCTTGATGGATCAATCTTATCAAATCAGAAGAGGATCAGAAGGGGTCCACTGCCCGAATCCCATGGCATAAACCAGGTTGAACTGTTGGAATCCCATCACCCTTGCTTAGGGTTTAGACAGTTGTTTAGTAATACTCATCAGAGTGATCATGTAGCTGCAAATGTGATCCGCAGTAATGGCTTTAGCATGGGTAGAGAGCGAAAACCGAGCCTGGCATTGCAACAAGGCCACTGTGAAACCAGTGTGGTTCTTCCTAATAATTTGATCATGGGTTTGAACCAATTCTCACAGAAGCCTAGTACTTCTTTGATCAGTATGGACGGAAGTAGCATTAACACGCAGACGTGGATGATTCACTATTCTTCGTCTGAACTCTTCGCTTCTCGAGATAGCGACTCTATGTTTTCTTCTAAAAAGAAGTGTGAAGAAGCCAGTACAAGATGTTTAGCCTCTACCGGTGGATGTCATTGCTCAAAGAGAAGGAAACTGAGAATAAAGAGAAGAATACGAGTTCCGGCTGTGAGCAATAAGCTAGCTGATATACCTCCTGATGACTATTCTTGGAGGAAGTATGGGCAGAAGCCTATCAAAGGGTCTCCATATCCTAGGAGTTATTACAAATGCAGCTGTGTGCGAGGATGTCCTGCACGAAAGCATGTCGAACGATGCTTGGAGGATCCTAACATGTTGGTTGTTACATATGAAGGCAATCATCAACACCCGAGGTTTACATTTCAGGCACCCTCTGTTGCGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_zn_clust WRKY

Protein Analysis

319

Amino Acids

35.88

Weight (kDa)

9.58

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 204 - 246 6.6e-16 Plant zinc cluster domain
WRKY PF03106 250 - 307 6.4e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016930)

Species Orthologous Gene IDs
malus_domestica MD06G1062800.v1.1
prunus_persica Prupe.5G074200_v2.0.a1
pyrus_communis pycom06g06060
rosa_chinensis RchiOBHm_Chr7g0202671
rosa_laevigata RLG00000003582
rosa_roxburghii Rroxscaffold_3G00254420
rosa_rugosa Rorug07G0071700 Rorug07G0071800 Rorug07G0071900
rosa_samantha Rh7AG199600 Rh7BG200400 Rh7CG211100 Rh7DG206500
rosa_wichuraiana Rw7G017480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 937
AciI CCGC 2 cut(s) 181, 367
AclWI GGATC 5 cut(s) 214, 239, 358, 869, 882
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 2 cut(s) 499, 634
AfiI CCNNNNNNNGG 3 cut(s) 43, 305, 788
AflIII ACRYGT 1 cut(s) 882
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 4 cut(s) 30, 82, 278, 475
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 3 cut(s) 37, 270, 408
AluBI AGCT 4 cut(s) 353, 730, 734, 825
AluI AGCT 4 cut(s) 353, 730, 734, 825
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 798
AlwI GGATC 5 cut(s) 214, 239, 358, 869, 882
Ama87I CYCGRG 2 cut(s) 582, 919
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 353, 822
ApoI RAATTY 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 479
AspA2I CCTAGG 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 287
AsuNHI GCTAGC 1 cut(s) 730
AvaI CYCGRG 2 cut(s) 582, 919
AvaII GGWCC 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 803
BamHI GGATCC 1 cut(s) 874
BanI GGYRCC 1 cut(s) 937
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 340, 834
BccI CCATC 3 cut(s) 99, 197, 300
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 3 cut(s) 39, 272, 410
BclI TGATCA 3 cut(s) 343, 462, 507
BcoDI GTCTC 1 cut(s) 798
BfaI CTAG 3 cut(s) 495, 731, 804
BisI GCNGC 2 cut(s) 354, 823
BlnI CCTAGG 1 cut(s) 803
BlsI GCNGC 2 cut(s) 355, 824
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 3 cut(s) 39, 272, 410
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 2 cut(s) 582, 919
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 4 cut(s) 35, 243, 876, 939
BmrFI CCNGG 3 cut(s) 39, 272, 410
BmsI GCATC 3 cut(s) 117, 154, 854
BmtI GCTAGC 1 cut(s) 734
BplI GAGNNNNNCTC 2 cut(s) 121, 153
Bpu10I CCTNAGC 1 cut(s) 304
BpuEI CTTGAG 2 cut(s) 123, 144
BsaI GGTCTC 1 cut(s) 798
BsaJI CCNNGG 4 cut(s) 37, 259, 803, 920
BsaWI WCCGGW 1 cut(s) 653
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 305, 788
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 438, 630
Bse3DI GCAATG 2 cut(s) 413, 664
BseBI CCWGG 3 cut(s) 39, 272, 410
BseDI CCNNGG 4 cut(s) 37, 259, 803, 920
BseGI GGATG 3 cut(s) 552, 665, 842
BseLI CCNNNNNNNGG 3 cut(s) 43, 305, 788
BseMI GCAATG 2 cut(s) 413, 664
BseMII CTCAG 2 cut(s) 105, 677
BseNI ACTGG 2 cut(s) 438, 630
BseXI GCAGC 2 cut(s) 340, 834
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 937
BshTI ACCGGT 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 2 cut(s) 582, 919
BsiSI CCGG 2 cut(s) 654, 713
BslI CCNNNNNNNGG 3 cut(s) 43, 305, 788
BsmAI GTCTC 1 cut(s) 798
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 1 cut(s) 798
BsoBI CYCGRG 2 cut(s) 582, 919
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 2 cut(s) 181, 367
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 106, 678
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 4 cut(s) 35, 243, 876, 939
BspOI GCTAGC 1 cut(s) 734
BspPI GGATC 5 cut(s) 214, 239, 358, 869, 882
BspT107I GGYRCC 1 cut(s) 937
BspTNI GGTCTC 1 cut(s) 798
BsrDI GCAATG 2 cut(s) 413, 664
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 2 cut(s) 438, 630
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 4 cut(s) 37, 259, 803, 920
BssMI GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
BssT1I CCWWGG 2 cut(s) 259, 803
Bst2UI CCWGG 3 cut(s) 39, 272, 410
Bst4CI ACNGT 3 cut(s) 282, 318, 431
Bst6I CTCTTC 2 cut(s) 221, 578
BstC8I GCNNGC 2 cut(s) 87, 732
BstDEI CTNAG 3 cut(s) 114, 304, 686
BstDSI CCRYGG 1 cut(s) 259
BstENI CCTNNNNNAGG 2 cut(s) 303, 786
BstF5I GGATG 3 cut(s) 552, 665, 842
BstKTI GATC 7 cut(s) 209, 234, 346, 366, 465, 510, 877
BstMAI GTCTC 1 cut(s) 798
BstMBI GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
BstMWI GCNNNNNNNGC 2 cut(s) 164, 375
BstNI CCWGG 3 cut(s) 39, 272, 410
BstNSI RCATGY 3 cut(s) 89, 857, 886
BstSCI CCNGG 3 cut(s) 37, 270, 408
BstV1I GCAGC 2 cut(s) 340, 834
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 77
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 3 cut(s) 552, 665, 842
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 3 cut(s) 245, 427, 445
Cac8I GCNNGC 2 cut(s) 87, 732
CciI TCATGA 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 242
CsiI ACCWGGT 1 cut(s) 270
Csp6I GTAC 2 cut(s) 498, 633
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 8 cut(s) 59, 86, 260, 347, 385, 466, 854, 883
CviQI GTAC 2 cut(s) 498, 633
DdeI CTNAG 3 cut(s) 114, 304, 686
DpnI GATC 7 cut(s) 208, 233, 345, 365, 464, 509, 876
DpnII GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
Eam1104I CTCTTC 2 cut(s) 221, 578
EarI CTCTTC 2 cut(s) 221, 578
Eco130I CCWWGG 2 cut(s) 259, 803
Eco31I GGTCTC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 582, 919
EcoNI CCTNNNNNAGG 2 cut(s) 303, 786
EcoRI GAATTC 1 cut(s) 176
EcoRII CCWGG 3 cut(s) 37, 270, 408
EcoT14I CCWWGG 2 cut(s) 259, 803
ErhI CCWWGG 2 cut(s) 259, 803
FaeI CATG 8 cut(s) 62, 89, 263, 350, 388, 469, 857, 886
FatI CATG 8 cut(s) 58, 85, 259, 346, 384, 465, 853, 882
FauNDI CATATG 1 cut(s) 898
FbaI TGATCA 3 cut(s) 343, 462, 507
Fnu4HI GCNGC 2 cut(s) 354, 823
FokI GGATG 3 cut(s) 559, 672, 849
Fsp4HI GCNGC 2 cut(s) 354, 823
FspBI CTAG 3 cut(s) 495, 731, 804
GluI GCNGC 2 cut(s) 354, 823
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 654, 713
Hin1II CATG 8 cut(s) 62, 89, 263, 350, 388, 469, 857, 886
HinfI GANTC 5 cut(s) 11, 254, 287, 550, 593
HpaII CCGG 2 cut(s) 654, 713
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 172, 245, 927
Hpy188I TCNGA 5 cut(s) 115, 225, 236, 339, 568
Hpy188III TCNNGA 6 cut(s) 59, 140, 161, 582, 584, 746
Hpy8I GTNNAC 3 cut(s) 172, 245, 927
HpyAV CCTTC 3 cut(s) 231, 672, 896
HpyCH4III ACNGT 3 cut(s) 282, 318, 431
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 6 cut(s) 108, 167, 356, 418, 822, 845
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 375
HpyF3I CTNAG 3 cut(s) 114, 304, 686
HpySE526I ACGT 1 cut(s) 542
Hsp92II CATG 8 cut(s) 62, 89, 263, 350, 388, 469, 857, 886
Ksp22I TGATCA 3 cut(s) 343, 462, 507
Kzo9I GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
Lsp1109I GCAGC 2 cut(s) 340, 834
LweI GCATC 3 cut(s) 117, 154, 854
MabI ACCWGGT 1 cut(s) 270
MaeI CTAG 3 cut(s) 495, 731, 804
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 892
MalI GATC 7 cut(s) 208, 233, 345, 365, 464, 509, 876
MboI GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
MboII GAAGA 7 cut(s) 238, 440, 552, 565, 597, 635, 711
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 4 cut(s) 54, 176, 457, 479
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 2 cut(s) 531, 955
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 825
MspI CCGG 2 cut(s) 654, 713
MspR9I CCNGG 3 cut(s) 39, 272, 410
MvaI CCWGG 3 cut(s) 39, 272, 410
MwoI GCNNNNNNNGC 2 cut(s) 164, 375
NcoI CCATGG 1 cut(s) 259
NdeI CATATG 1 cut(s) 898
NdeII GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
NheI GCTAGC 1 cut(s) 730
NlaIII CATG 8 cut(s) 62, 89, 263, 350, 388, 469, 857, 886
NlaIV GGNNCC 4 cut(s) 35, 243, 876, 939
NspI RCATGY 3 cut(s) 89, 857, 886
PaeI GCATGC 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 582
PagI TCATGA 1 cut(s) 58
PciI ACATGT 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 11, 254, 287, 550
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 2 cut(s) 355, 824
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
PscI ACATGT 1 cut(s) 882
Psp6I CCWGG 3 cut(s) 37, 270, 408
PspGI CCWGG 3 cut(s) 37, 270, 408
PspN4I GGNNCC 4 cut(s) 35, 243, 876, 939
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 874
PvuII CAGCTG 1 cut(s) 825
RsaI GTAC 2 cut(s) 499, 634
RsaNI GTAC 2 cut(s) 498, 633
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 2 cut(s) 531, 955
SatI GCNGC 2 cut(s) 354, 823
Sau3AI GATC 7 cut(s) 206, 231, 343, 363, 462, 507, 874
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 3 cut(s) 39, 272, 410
SduI GDGCHC 1 cut(s) 139
SexAI ACCWGGT 1 cut(s) 270
SfaNI GCATC 3 cut(s) 117, 154, 854
Sfr274I CTCGAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 3 cut(s) 138, 159, 582
SmoI CTYRAG 3 cut(s) 138, 159, 582
SphI GCATGC 1 cut(s) 89
Sse9I AATT 4 cut(s) 54, 176, 457, 479
SsiI CCGC 2 cut(s) 181, 367
SspMI CTAG 3 cut(s) 495, 731, 804
StyD4I CCNGG 3 cut(s) 37, 270, 408
StyI CCWWGG 2 cut(s) 259, 803
TaaI ACNGT 3 cut(s) 282, 318, 431
TaiI ACGT 1 cut(s) 545
TaqI TCGA 2 cut(s) 583, 858
TasI AATT 4 cut(s) 54, 176, 457, 479
TatI WGTACW 2 cut(s) 497, 632
TfiI GAWTC 4 cut(s) 11, 254, 287, 550
Tru1I TTAA 2 cut(s) 531, 955
Tru9I TTAA 2 cut(s) 531, 955
TscAI CASTG 3 cut(s) 252, 434, 445
TseI GCWGC 2 cut(s) 353, 822
TspDTI ATGAA 2 cut(s) 47, 915
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 3 cut(s) 252, 434, 445
VpaK11BI GGWCC 1 cut(s) 242
XagI CCTNNNNNAGG 2 cut(s) 303, 786
XapI RAATTY 1 cut(s) 176
XceI RCATGY 3 cut(s) 89, 857, 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 582
XmaJI CCTAGG 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 3 cut(s) 495, 731, 804
ZrmI AGTACT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.