Prupe.5G074200_v2.0.a1
WRKY Family

Plant zinc cluster domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016930
Physical Location & Seq
Reverse (-)
8848537 .. 8851595
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G074200.1

Sequence Viewer

Length: 993 bp
ATGAACCCAGGATTGGATTTCAAAATTCATGAGGCTGCTCAAAGTAGTTTGAAACATGCCCATCACCTGTTTGGTTGTGTATCTGAGAATAAACAAAAGAGAAGTGTTCAAGAAGTAAGCTTGATTGCTCAAGATGCAGTGGAAGAATTCAGAAAACTACTTGCTCTCCTTGATGGATCATTGTTATCAAACCAGAAGAGGATCAGAAGAGGTCCTTTGCCAAAATCCCATGACATAAACCAGGTTGAACTGTTGGACTCTCCTAACCCTTCATCCCAAAATACTACACACAATTGGCCTCAGCCTCATCCCCAGCCCCAGCCTCAGAATTGCTTTGTTAGACAGTTTTTTAGTGCTGTTCATCAAACTGATCAAGCAACTGCAAATGTGATCCACAGTAATAGCTTTAGCATGGGTAGAGAGAAAAAACCAAACCCGGCATTGCAGCAAGGGCAATCTGAAGCCGGTGTGGTTCTTCCTAATAATTTAATCATGGGGTTGAACCAATTCTCACAAAAGCCTACTAGCACTTCTTTGATCAGTATGGATGGAAGTAGCCTTAACACGCGGATGATTCAATATTCGTCGTCTGAACTCTTGGCTTCTCGAGATTGTACCTCTATGTTTTCTTCCAAAAGGAAGTGCGGGGCGAAAAGTGAAGAAGTCACTCCAAGATGCCTAGTCTCTGCTGGTGGATGCCATTGCTCAAAGCGAAGGAAACTTAGAATAAAGAGAAGAATCCGAGTTCCGGCTTTAAGCAATAAGCTAGCTGATATACCTCCTGATGACTATACCTGGAGGAAGTATGGGCAGAAACCTATTAAGGGGTCTCCATATCCTAGGAGTTATTACAAATGCAGCAGTGTGAGGGGATGCCCTGCAAGAAAGCATGTCGAACGATGCTTGGAAGATCCTACCATGTTGGTTGTTACATATGAAGGCGACCATCAACACCCCAAGATTACATTTCAAGCACCTACACTTGCGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_zn_clust WRKY

Protein Analysis

331

Amino Acids

36.96

Weight (kDa)

9.62

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016930)

Species Orthologous Gene IDs
malus_domestica MD06G1062800.v1.1
prunus_persica Prupe.5G074200_v2.0.a1
pyrus_communis pycom06g06060
rosa_chinensis RchiOBHm_Chr7g0202671
rosa_laevigata RLG00000003582
rosa_roxburghii Rroxscaffold_3G00254420
rosa_rugosa Rorug07G0071700 Rorug07G0071800 Rorug07G0071900
rosa_samantha Rh7AG199600 Rh7BG200400 Rh7CG211100 Rh7DG206500
rosa_wichuraiana Rw7G017480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 568
AciI CCGC 2 cut(s) 568, 645
AclWI GGATC 4 cut(s) 184, 209, 385, 905
AcsI RAATTY 2 cut(s) 24, 146
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 3 cut(s) 13, 748, 824
AgsI TTSAA 7 cut(s) 22, 52, 110, 248, 502, 578, 971
AjnI CCWGG 3 cut(s) 7, 240, 794
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 120, 405, 766, 770
AluI AGCT 4 cut(s) 120, 405, 766, 770
Alw26I GTCTC 2 cut(s) 688, 834
AlwI GGATC 4 cut(s) 184, 209, 385, 905
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 3 cut(s) 35, 445, 858
ApoI RAATTY 2 cut(s) 24, 146
Asp700I GAANNNNTTC 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 839
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 56
AsuNHI GCTAGC 1 cut(s) 766
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 1 cut(s) 212
AvrII CCTAGG 1 cut(s) 839
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 3 cut(s) 22, 457, 870
BccI CCATC 4 cut(s) 69, 167, 542, 954
BciT130I CCWGG 3 cut(s) 9, 242, 796
BclI TGATCA 2 cut(s) 370, 537
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 688, 834
BfaI CTAG 4 cut(s) 525, 680, 767, 840
BisI GCNGC 3 cut(s) 36, 446, 859
BlnI CCTAGG 1 cut(s) 839
BlsI GCNGC 3 cut(s) 37, 447, 860
Bme1390I CCNGG 4 cut(s) 9, 242, 437, 796
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 4 cut(s) 9, 242, 437, 796
BmsI GCATC 5 cut(s) 124, 665, 686, 863, 890
BmtI GCTAGC 1 cut(s) 770
BpmI CTGGAG 1 cut(s) 817
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 2 cut(s) 7, 839
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 748, 824
Bse118I RCCGGY 1 cut(s) 464
Bse3DI GCAATG 2 cut(s) 440, 700
BseBI CCWGG 3 cut(s) 9, 242, 796
BseDI CCNNGG 2 cut(s) 7, 839
BseGI GGATG 6 cut(s) 272, 307, 553, 576, 701, 878
BseLI CCNNNNNNNGG 3 cut(s) 13, 748, 824
BseMI GCAATG 2 cut(s) 440, 700
BseMII CTCAG 3 cut(s) 75, 314, 338
BseXI GCAGC 3 cut(s) 22, 457, 870
BseYI CCCAGC 2 cut(s) 312, 318
Bsh1236I CGCG 1 cut(s) 568
BshFI GGCC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 3 cut(s) 437, 465, 749
BslI CCNNNNNNNGG 3 cut(s) 13, 748, 824
BsmAI GTCTC 2 cut(s) 688, 834
BsnI GGCC 1 cut(s) 298
Bso31I GGTCTC 1 cut(s) 834
BsoBI CYCGRG 1 cut(s) 606
Bsp143I GATC 6 cut(s) 176, 201, 370, 390, 537, 910
BspACI CCGC 2 cut(s) 568, 645
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 3 cut(s) 76, 313, 337
BspFNI CGCG 1 cut(s) 568
BspHI TCATGA 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 770
BspPI GGATC 4 cut(s) 184, 209, 385, 905
BspTNI GGTCTC 1 cut(s) 834
BsrDI GCAATG 2 cut(s) 440, 700
BsrFI RCCGGY 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 7, 839
BssMI GATC 6 cut(s) 176, 201, 370, 390, 537, 910
BssT1I CCWWGG 1 cut(s) 839
Bst2UI CCWGG 3 cut(s) 9, 242, 796
Bst4CI ACNGT 3 cut(s) 252, 345, 398
Bst6I CTCTTC 2 cut(s) 191, 202
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 4 cut(s) 84, 300, 324, 722
BstF5I GGATG 6 cut(s) 272, 307, 553, 576, 701, 878
BstFNI CGCG 1 cut(s) 568
BstKTI GATC 6 cut(s) 179, 204, 373, 393, 540, 913
BstMAI GTCTC 2 cut(s) 688, 834
BstMBI GATC 6 cut(s) 176, 201, 370, 390, 537, 910
BstMWI GCNNNNNNNGC 2 cut(s) 134, 451
BstNI CCWGG 3 cut(s) 9, 242, 796
BstNSI RCATGY 2 cut(s) 59, 893
BstSCI CCNGG 4 cut(s) 7, 240, 435, 794
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 3 cut(s) 22, 457, 870
BstX2I RGATCY 1 cut(s) 910
BstYI RGATCY 1 cut(s) 910
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 6 cut(s) 272, 307, 553, 576, 701, 878
BtsI GCAGTG 2 cut(s) 144, 868
BtsIMutI CAGTG 2 cut(s) 144, 868
Cac8I GCNNGC 1 cut(s) 768
CciI TCATGA 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 212
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 1 cut(s) 615
CviAII CATG 7 cut(s) 29, 56, 230, 412, 493, 890, 919
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 4 cut(s) 84, 300, 324, 722
DpnI GATC 6 cut(s) 178, 203, 372, 392, 539, 912
DpnII GATC 6 cut(s) 176, 201, 370, 390, 537, 910
Eam1104I CTCTTC 2 cut(s) 191, 202
EarI CTCTTC 2 cut(s) 191, 202
Eco130I CCWWGG 1 cut(s) 839
Eco31I GGTCTC 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 606
EcoO109I RGGNCCY 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 3 cut(s) 7, 240, 794
EcoT14I CCWWGG 1 cut(s) 839
ErhI CCWWGG 1 cut(s) 839
FaeI CATG 7 cut(s) 32, 59, 233, 415, 496, 893, 922
FalI AAGNNNNNCTT 2 cut(s) 199, 231
FatI CATG 7 cut(s) 28, 55, 229, 411, 492, 889, 918
FauI CCCGC 1 cut(s) 638
FauNDI CATATG 1 cut(s) 934
FbaI TGATCA 2 cut(s) 370, 537
Fnu4HI GCNGC 3 cut(s) 36, 446, 859
FokI GGATG 6 cut(s) 259, 294, 560, 583, 708, 885
Fsp4HI GCNGC 3 cut(s) 36, 446, 859
FspBI CTAG 4 cut(s) 525, 680, 767, 840
GluI GCNGC 3 cut(s) 36, 446, 859
GsaI CCCAGC 2 cut(s) 316, 322
GsuI CTGGAG 1 cut(s) 817
HaeIII GGCC 1 cut(s) 298
HapII CCGG 3 cut(s) 437, 465, 749
Hin1II CATG 7 cut(s) 32, 59, 233, 415, 496, 893, 922
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 3 cut(s) 257, 574, 738
HpaII CCGG 3 cut(s) 437, 465, 749
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 7 cut(s) 85, 152, 206, 327, 460, 592, 743
Hpy188III TCNNGA 6 cut(s) 29, 110, 131, 606, 608, 782
Hpy99I CGWCG 1 cut(s) 589
HpyAV CCTTC 3 cut(s) 279, 708, 932
HpyCH4III ACNGT 3 cut(s) 252, 345, 398
HpyCH4V TGCA 5 cut(s) 137, 383, 445, 858, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 451
HpyF3I CTNAG 4 cut(s) 84, 300, 324, 722
Hsp92II CATG 7 cut(s) 32, 59, 233, 415, 496, 893, 922
Ksp22I TGATCA 2 cut(s) 370, 537
Kzo9I GATC 6 cut(s) 176, 201, 370, 390, 537, 910
Lsp1109I GCAGC 3 cut(s) 22, 457, 870
LweI GCATC 5 cut(s) 124, 665, 686, 863, 890
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 4 cut(s) 525, 680, 767, 840
MaeIII GTNAC 2 cut(s) 664, 928
MalI GATC 6 cut(s) 178, 203, 372, 392, 539, 912
MboI GATC 6 cut(s) 176, 201, 370, 390, 537, 910
MboII GAAGA 8 cut(s) 155, 208, 219, 467, 621, 671, 747, 920
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 910
MluCI AATT 6 cut(s) 24, 146, 292, 328, 484, 506
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 506
MseI TTAA 5 cut(s) 488, 561, 755, 822, 991
MslI CAYNNNNRTG 1 cut(s) 569
MspI CCGG 3 cut(s) 437, 465, 749
MspR9I CCNGG 4 cut(s) 9, 242, 437, 796
MunI CAATTG 1 cut(s) 292
MvaI CCWGG 3 cut(s) 9, 242, 796
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 2 cut(s) 134, 451
NciI CCSGG 1 cut(s) 437
NdeI CATATG 1 cut(s) 934
NdeII GATC 6 cut(s) 176, 201, 370, 390, 537, 910
NheI GCTAGC 1 cut(s) 766
NlaIII CATG 7 cut(s) 32, 59, 233, 415, 496, 893, 922
NmuCI GTSAC 1 cut(s) 664
NspI RCATGY 2 cut(s) 59, 893
PaeR7I CTCGAG 1 cut(s) 606
PagI TCATGA 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 574, 738
PkrI GCNGC 3 cut(s) 37, 447, 860
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 3 cut(s) 7, 240, 794
PspFI CCCAGC 2 cut(s) 312, 318
PspGI CCWGG 3 cut(s) 7, 240, 794
PspPI GGNCC 1 cut(s) 212
PspPPI RGGWCCY 1 cut(s) 212
PsuI RGATCY 1 cut(s) 910
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 5 cut(s) 488, 561, 755, 822, 991
SatI GCNGC 3 cut(s) 36, 446, 859
Sau3AI GATC 6 cut(s) 176, 201, 370, 390, 537, 910
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 4 cut(s) 9, 242, 437, 796
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 5 cut(s) 124, 665, 686, 863, 890
Sfr274I CTCGAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 2 cut(s) 129, 606
SmoI CTYRAG 2 cut(s) 129, 606
Sse9I AATT 6 cut(s) 24, 146, 292, 328, 484, 506
SsiI CCGC 2 cut(s) 568, 645
SspI AATATT 1 cut(s) 581
SspMI CTAG 4 cut(s) 525, 680, 767, 840
StyD4I CCNGG 4 cut(s) 7, 240, 435, 794
StyI CCWWGG 1 cut(s) 839
TaaI ACNGT 3 cut(s) 252, 345, 398
TaqI TCGA 2 cut(s) 607, 894
TasI AATT 6 cut(s) 24, 146, 292, 328, 484, 506
TfiI GAWTC 2 cut(s) 574, 738
Tru1I TTAA 5 cut(s) 488, 561, 755, 822, 991
Tru9I TTAA 5 cut(s) 488, 561, 755, 822, 991
TscAI CASTG 2 cut(s) 144, 868
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 3 cut(s) 35, 445, 858
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 5 cut(s) 17, 17, 261, 350, 951
TspRI CASTG 2 cut(s) 144, 868
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 2 cut(s) 24, 146
XceI RCATGY 2 cut(s) 59, 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 606
XmaJI CCTAGG 1 cut(s) 839
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 4 cut(s) 525, 680, 767, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.