Rh7CG211100
WRKY Family

Plant zinc cluster domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016930
Physical Location & Seq
Forward (+)
18953896 .. 18955039
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG211100.1

Sequence Viewer

Length: 816 bp
ATGAATCCAGGGTTGGATTTCAAACTCCATGAGGTTGCTAAAACTAGTCTTCAACATGCGCACCACCTAGTTGCTTGTATGTCTGACAATAACCAAGAGAGAAGTGTTCAAGAAGTGAGCCTTGTTGCTCAAGATGCAGTGAAGGAATGCAGAAAACTACTTTCCCTACTTGATGGATCAATGTCATCAAATCACAAGAGGATCAGAAAGGGTCCTTTGCCGAAATCCGGTGACATAAACCAGGATGAAATGATGGACAGTAGTCCTAATTGTTCTTCATCTCATATCAAAACGCACGACCGTGATCATCAGCCTTGCTTGGTTACACATTTTTTTAGCTCCCTTCAGAGAGATCAAGCAATTGCTAACTATGACCAAAGCAGTGTGGTCCTTCCTAGCAATATAGTCATGGGGTTGAACCAATTCTCACAAAAGCCTAGCAGGACTTCAGTGATCAGCATGGATGGTAGTAGCATCAACACGCAGATAGTTCGACATTCAATGTCTGAACTATTGACTTCTAGAGACGGCACCTCTATGTTTTCTTCCAAAAGGAAGAGTTGTGGGGTTAAAAGTGAAGAAGCCGGTACGGTATGCCTAGCCTCTACTGGTAAATGTCATTGCTCAAAGAGAAGGAAACTAAGAATAAAGAGAAGAATCCGAGTTCCGGCTGTAAGCAACAGGCTAGCAGATATACCTCCTGATGACTATTCTTGGAGGAAGTATGGGCAGAAACCTATTAAAGGATCTCCATATCCTAGACTGTCCCTCTTGCTTTATGATTTCAAAGGAGTTACTACAAATGCAGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_zn_clust WRKY

Protein Analysis

271

Amino Acids

30.15

Weight (kDa)

9.56

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 185 - 231 1.6e-15 Plant zinc cluster domain
WRKY PF03106 235 - 254 1.4e-06 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016930)

Species Orthologous Gene IDs
malus_domestica MD06G1062800.v1.1
prunus_persica Prupe.5G074200_v2.0.a1
pyrus_communis pycom06g06060
rosa_chinensis RchiOBHm_Chr7g0202671
rosa_laevigata RLG00000003582
rosa_roxburghii Rroxscaffold_3G00254420
rosa_rugosa Rorug07G0071700 Rorug07G0071800 Rorug07G0071900
rosa_samantha Rh7AG199600 Rh7BG200400 Rh7CG211100 Rh7DG206500
rosa_wichuraiana Rw7G017480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 530
AclWI GGATC 3 cut(s) 184, 209, 754
AcuI CTGAAG 2 cut(s) 329, 432
AfaI GTAC 1 cut(s) 589
AfiI CCNNNNNNNGG 3 cut(s) 227, 667, 743
AgsI TTSAA 6 cut(s) 22, 53, 110, 418, 501, 787
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 2 cut(s) 7, 240
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 3 cut(s) 184, 209, 754
ApeKI GCWGC 1 cut(s) 806
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 212, 388
AsuHPI GGTGA 1 cut(s) 242
AsuNHI GCTAGC 1 cut(s) 685
AvaII GGWCC 2 cut(s) 212, 388
BanI GGYRCC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 41
BccI CCATC 3 cut(s) 167, 247, 458
BceAI ACGGC 1 cut(s) 544
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BciT130I CCWGG 2 cut(s) 9, 242
BclI TGATCA 2 cut(s) 304, 453
BcoDI GTCTC 1 cut(s) 519
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 8 cut(s) 45, 68, 396, 438, 522, 599, 686, 759
BisI GCNGC 1 cut(s) 807
BlsI GCNGC 1 cut(s) 808
Bme1390I CCNGG 2 cut(s) 9, 242
Bme18I GGWCC 2 cut(s) 212, 388
BmgT120I GGNCC 2 cut(s) 212, 388
BmiI GGNNCC 2 cut(s) 213, 532
BmrFI CCNGG 2 cut(s) 9, 242
BmsI GCATC 2 cut(s) 124, 483
BmtI GCTAGC 1 cut(s) 689
BoxI GACNNNNGTC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 667, 743
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 1 cut(s) 619
BseBI CCWGG 2 cut(s) 9, 242
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 250, 469
BseLI CCNNNNNNNGG 3 cut(s) 227, 667, 743
BseMI GCAATG 1 cut(s) 619
BseNI ACTGG 1 cut(s) 613
Bsh1285I CGRYCG 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 3 cut(s) 228, 585, 668
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 3 cut(s) 227, 667, 743
BsmAI GTCTC 1 cut(s) 519
BsmBI CGTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 751
BsmI GAATGC 1 cut(s) 152
Bsp143I GATC 6 cut(s) 176, 201, 304, 352, 453, 746
BspLI GGNNCC 2 cut(s) 213, 532
BspOI GCTAGC 1 cut(s) 689
BspPI GGATC 3 cut(s) 184, 209, 754
BspT107I GGYRCC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 1 cut(s) 613
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 6 cut(s) 176, 201, 304, 352, 453, 746
Bst2UI CCWGG 2 cut(s) 9, 242
Bst4CI ACNGT 4 cut(s) 260, 302, 592, 765
Bst6I CTCTTC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 1 cut(s) 641
BstENI CCTNNNNNAGG 1 cut(s) 741
BstF5I GGATG 2 cut(s) 250, 469
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 6 cut(s) 179, 204, 307, 355, 456, 749
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 6 cut(s) 176, 201, 304, 352, 453, 746
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 2 cut(s) 9, 242
BstNSI RCATGY 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 7, 240
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BtsCI GGATG 2 cut(s) 250, 469
BtsI GCAGTG 3 cut(s) 144, 388, 816
BtsIMutI CAGTG 4 cut(s) 144, 388, 456, 816
Cac8I GCNNGC 1 cut(s) 687
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 2 cut(s) 212, 388
Csp6I GTAC 1 cut(s) 588
CviAII CATG 4 cut(s) 29, 56, 409, 460
CviJI RGCY 8 cut(s) 120, 313, 339, 436, 584, 602, 671, 685
CviKI_1 RGCY 8 cut(s) 120, 313, 339, 436, 584, 602, 671, 685
CviQI GTAC 1 cut(s) 588
DdeI CTNAG 1 cut(s) 641
DpnI GATC 6 cut(s) 178, 203, 306, 354, 455, 748
DpnII GATC 6 cut(s) 176, 201, 304, 352, 453, 746
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 212, 388
Eco57I CTGAAG 2 cut(s) 329, 432
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 7, 240
Esp3I CGTCTC 1 cut(s) 519
FaeI CATG 4 cut(s) 32, 59, 412, 463
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 751
FatI CATG 4 cut(s) 28, 55, 408, 459
FbaI TGATCA 2 cut(s) 304, 453
Fnu4HI GCNGC 1 cut(s) 807
FokI GGATG 2 cut(s) 257, 476
Fsp4HI GCNGC 1 cut(s) 807
FspAI RTGCGCAY 1 cut(s) 60
FspBI CTAG 8 cut(s) 45, 68, 396, 438, 522, 599, 686, 759
FspI TGCGCA 1 cut(s) 60
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 807
HapII CCGG 3 cut(s) 228, 585, 668
HhaI GCGC 1 cut(s) 61
Hin1II CATG 4 cut(s) 32, 59, 412, 463
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 2 cut(s) 4, 657
HpaII CCGG 3 cut(s) 228, 585, 668
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 5 cut(s) 85, 206, 348, 508, 662
Hpy188III TCNNGA 4 cut(s) 110, 131, 522, 701
HpyAV CCTTC 4 cut(s) 136, 353, 401, 627
HpyCH4III ACNGT 4 cut(s) 260, 302, 592, 765
HpyCH4V TGCA 3 cut(s) 137, 150, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 641
Hsp92II CATG 4 cut(s) 32, 59, 412, 463
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 2 cut(s) 304, 453
Kzo9I GATC 6 cut(s) 176, 201, 304, 352, 453, 746
LmnI GCTCC 1 cut(s) 344
LweI GCATC 2 cut(s) 124, 483
MaeI CTAG 8 cut(s) 45, 68, 396, 438, 522, 599, 686, 759
MaeIII GTNAC 3 cut(s) 230, 322, 793
MalI GATC 6 cut(s) 178, 203, 306, 354, 455, 748
MboI GATC 6 cut(s) 176, 201, 304, 352, 453, 746
MboII GAAGA 6 cut(s) 41, 267, 537, 568, 590, 666
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 1 cut(s) 746
MluCI AATT 3 cut(s) 268, 360, 422
MnlI CCTC 7 cut(s) 25, 192, 544, 613, 708, 711, 779
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 2 cut(s) 570, 741
MslI CAYNNNNRTG 2 cut(s) 300, 536
MspI CCGG 3 cut(s) 228, 585, 668
MspR9I CCNGG 2 cut(s) 9, 242
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 2 cut(s) 9, 242
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 6 cut(s) 176, 201, 304, 352, 453, 746
NheI GCTAGC 1 cut(s) 685
NlaIII CATG 4 cut(s) 32, 59, 412, 463
NlaIV GGNNCC 2 cut(s) 213, 532
NmuCI GTSAC 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 60
NspI RCATGY 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 300
PctI GAATGC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 4, 657
PkrI GCNGC 1 cut(s) 808
PpuMI RGGWCCY 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 7, 240
PspGI CCWGG 2 cut(s) 7, 240
PspN4I GGNNCC 2 cut(s) 213, 532
PspPI GGNCC 2 cut(s) 212, 388
PspPPI RGGWCCY 1 cut(s) 212
PsuI RGATCY 1 cut(s) 746
RsaI GTAC 1 cut(s) 589
RsaNI GTAC 1 cut(s) 588
RseI CAYNNNNRTG 2 cut(s) 300, 536
SaqAI TTAA 2 cut(s) 570, 741
SatI GCNGC 1 cut(s) 807
Sau3AI GATC 6 cut(s) 176, 201, 304, 352, 453, 746
Sau96I GGNCC 2 cut(s) 212, 388
ScrFI CCNGG 2 cut(s) 9, 242
SetI ASST 6 cut(s) 36, 69, 341, 536, 700, 739
SfaNI GCATC 2 cut(s) 124, 483
SinI GGWCC 2 cut(s) 212, 388
SmiMI CAYNNNNRTG 2 cut(s) 300, 536
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 3 cut(s) 268, 360, 422
SspMI CTAG 8 cut(s) 45, 68, 396, 438, 522, 599, 686, 759
StyD4I CCNGG 2 cut(s) 7, 240
TaaI ACNGT 4 cut(s) 260, 302, 592, 765
TaqI TCGA 1 cut(s) 493
TasI AATT 3 cut(s) 268, 360, 422
TfiI GAWTC 2 cut(s) 4, 657
Tru1I TTAA 2 cut(s) 570, 741
Tru9I TTAA 2 cut(s) 570, 741
TscAI CASTG 4 cut(s) 144, 388, 456, 816
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 17, 261, 267
TspRI CASTG 4 cut(s) 144, 388, 456, 816
VpaK11BI GGWCC 2 cut(s) 212, 388
XagI CCTNNNNNAGG 1 cut(s) 741
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 8 cut(s) 45, 68, 396, 438, 522, 599, 686, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.