Rorug07G0071700
WRKY Family

Plant zinc cluster domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016930
Physical Location & Seq
Reverse (-)
5493926 .. 5496028
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0071700.1

Sequence Viewer

Length: 615 bp
ATGGCAGCTTCCACTTCCTCCCTCATTTCCACCGCTTCGAATTTCCTGTTTCGCCCCAAAACTCTCTCCCAAATCCCATCCCTCTCCTTCCCTCACACAACTGCAAAGCCTCTCGTTCACCGGACCCGACCCGGCCGCAATTCGGGCCTGACCGTCAATGTCCAGTCGCTGGAGTTCTCCGGCTCGTTCTTCGAGGGCGGCGGGTTCCAGTCGGAGGACGACCCGAATTCTCCGTCCGGGCCGGGCCTAACCGCCGCGGAGGACAAGGAGGACCCGCCGTGCCCGCCGGGGCTCCGGCAGTACGAGACCATGGCGGTTCTCAGACCCGATATGTCTGAGGATGAAAGACTGGCTCTTACCCAGAAGTATGAGGAGTTGCTTATAGCTGGAGGTGGCATGTATGTGGAAGTCTTCAACAGAGGAGTGATTCCACTAGCCTATAGCATCCAGAAGAAAAACAAAGCTGGAGAATCCAACACTTACCTGGATGGCATCTACCTACTCTTTACGTACTTCACAAAACCTGAGTCTCTCGAGTTTCTTGAACAGAATTTGAAAGCTGATGACAATGTCATCCGATCTATGAGTTTCAAAATAAGGAAGAGGAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_zn_clust WRKY

Protein Analysis

204

Amino Acids

22.66

Weight (kDa)

6.17

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 100 - 198 8.8e-19 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016930)

Species Orthologous Gene IDs
malus_domestica MD06G1062800.v1.1
prunus_persica Prupe.5G074200_v2.0.a1
pyrus_communis pycom06g06060
rosa_chinensis RchiOBHm_Chr7g0202671
rosa_laevigata RLG00000003582
rosa_roxburghii Rroxscaffold_3G00254420
rosa_rugosa Rorug07G0071700 Rorug07G0071800 Rorug07G0071900
rosa_samantha Rh7AG199600 Rh7BG200400 Rh7CG211100 Rh7DG206500
rosa_wichuraiana Rw7G017480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AccII CGCG 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 40, 226, 550
AfaI GTAC 3 cut(s) 302, 512, 611
AfiI CCNNNNNNNGG 3 cut(s) 142, 169, 214
AgsI TTSAA 4 cut(s) 415, 545, 556, 592
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 4 cut(s) 8, 386, 464, 560
AluI AGCT 4 cut(s) 8, 386, 464, 560
Alw26I GTCTC 2 cut(s) 299, 534
AlwNI CAGNNNCTG 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 4 cut(s) 133, 145, 239, 244
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 40, 226, 550
ArsI GACNNNNNNTTYG 4 cut(s) 218, 250, 512, 544
AspS9I GGNCC 5 cut(s) 123, 145, 239, 244, 271
AsuC2I CCSGG 4 cut(s) 132, 238, 243, 288
AsuHPI GGTGA 1 cut(s) 110
AsuII TTCGAA 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 2 cut(s) 123, 271
BaeGI GKGCMC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 294
BarI GAAGNNNNNNTAC 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 85, 482
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 4 cut(s) 132, 238, 243, 288
BcoDI GTCTC 2 cut(s) 299, 534
BfaI CTAG 2 cut(s) 434, 613
BfmI CTRYAG 1 cut(s) 439
BisI GCNGC 4 cut(s) 6, 136, 199, 255
BlsI GCNGC 4 cut(s) 7, 137, 200, 256
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 5 cut(s) 132, 238, 243, 288, 485
Bme18I GGWCC 2 cut(s) 123, 271
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 5 cut(s) 123, 145, 239, 244, 271
BmiI GGNNCC 4 cut(s) 125, 206, 273, 293
BmrFI CCNGG 5 cut(s) 132, 238, 243, 288, 485
BmsI GCATC 2 cut(s) 453, 501
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 3 cut(s) 191, 408, 486
Bpu14I TTCGAA 1 cut(s) 38
BpuMI CCSGG 4 cut(s) 132, 238, 243, 288
BsaAI YACGTR 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 255, 287, 309
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 169, 214
Bse1I ACTGG 3 cut(s) 163, 208, 354
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 3 cut(s) 255, 287, 309
BseGI GGATG 5 cut(s) 77, 346, 444, 493, 573
BseLI CCNNNNNNNGG 3 cut(s) 142, 169, 214
BseMII CTCAG 3 cut(s) 327, 334, 516
BseNI ACTGG 3 cut(s) 163, 208, 354
BseRI GAGGAG 2 cut(s) 386, 435
BseSI GKGCMC 1 cut(s) 284
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 135, 147, 241, 246
BsiEI CGRYCG 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 7 cut(s) 121, 132, 180, 237, 242, 287, 295
BslI CCNNNNNNNGG 3 cut(s) 142, 169, 214
BsmAI GTCTC 2 cut(s) 299, 534
BsnI GGCC 4 cut(s) 135, 147, 241, 246
Bso31I GGTCTC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 284, 294
Bsp143I GATC 1 cut(s) 578
Bsp19I CCATGG 1 cut(s) 309
BspANI GGCC 4 cut(s) 135, 147, 241, 246
BspCNI CTCAG 3 cut(s) 328, 333, 517
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 4 cut(s) 125, 206, 273, 293
BspT104I TTCGAA 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 299
BsrI ACTGG 3 cut(s) 163, 208, 354
BssECI CCNNGG 3 cut(s) 255, 287, 309
BssMI GATC 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 3 cut(s) 320, 336, 525
BstDSI CCRYGG 2 cut(s) 255, 309
BstF5I GGATG 5 cut(s) 77, 346, 444, 493, 573
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 1 cut(s) 581
BstMAI GTCTC 2 cut(s) 299, 534
BstMBI GATC 1 cut(s) 578
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 144, 283
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 5 cut(s) 130, 236, 241, 286, 483
BstSFI CTRYAG 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 284
BstSNI TACGTA 1 cut(s) 510
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 403
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 4 cut(s) 135, 147, 241, 246
BtgI CCRYGG 2 cut(s) 255, 309
BtsCI GGATG 5 cut(s) 77, 346, 444, 493, 573
Cac8I GCNNGC 1 cut(s) 284
CaiI CAGNNNCTG 1 cut(s) 169
Cfr13I GGNCC 5 cut(s) 123, 145, 239, 244, 271
Cfr42I CCGCGG 1 cut(s) 258
Csp6I GTAC 3 cut(s) 301, 511, 610
CviAII CATG 2 cut(s) 310, 397
CviQI GTAC 3 cut(s) 301, 511, 610
DdeI CTNAG 3 cut(s) 320, 336, 525
DpnI GATC 1 cut(s) 580
DpnII GATC 1 cut(s) 578
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
EclXI CGGCCG 1 cut(s) 133
Eco105I TACGTA 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 123, 271
Eco52I CGGCCG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 2 cut(s) 313, 400
FaiI YATR 8 cut(s) 311, 332, 369, 383, 398, 402, 441, 584
FatI CATG 2 cut(s) 309, 396
FauI CCCGC 3 cut(s) 194, 282, 291
Fnu4HI GCNGC 4 cut(s) 6, 136, 199, 255
FokI GGATG 5 cut(s) 64, 353, 431, 500, 560
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 4 cut(s) 6, 136, 199, 255
FspBI CTAG 2 cut(s) 434, 613
GluI GCNGC 4 cut(s) 6, 136, 199, 255
GsuI CTGGAG 3 cut(s) 191, 408, 486
HaeIII GGCC 4 cut(s) 135, 147, 241, 246
HapII CCGG 7 cut(s) 121, 132, 180, 237, 242, 287, 295
Hin1II CATG 2 cut(s) 313, 400
HinfI GANTC 3 cut(s) 427, 470, 527
HpaII CCGG 7 cut(s) 121, 132, 180, 237, 242, 287, 295
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 4 cut(s) 214, 323, 337, 578
Hpy188III TCNNGA 3 cut(s) 448, 533, 542
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 283
HpyF3I CTNAG 3 cut(s) 320, 336, 525
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 2 cut(s) 313, 400
KspI CCGCGG 1 cut(s) 258
Kzo9I GATC 1 cut(s) 578
LmnI GCTCC 1 cut(s) 297
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 453, 501
MaeI CTAG 2 cut(s) 434, 613
MaeII ACGT 1 cut(s) 509
MalI GATC 1 cut(s) 580
MboI GATC 1 cut(s) 578
MboII GAAGA 4 cut(s) 181, 403, 463, 613
MhlI GDGCHC 2 cut(s) 284, 294
MluCI AATT 4 cut(s) 40, 139, 226, 550
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 2 cut(s) 192, 498
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 7 cut(s) 121, 132, 180, 237, 242, 287, 295
MspR9I CCNGG 5 cut(s) 132, 238, 243, 288, 485
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 144, 283
NciI CCSGG 4 cut(s) 132, 238, 243, 288
NcoI CCATGG 1 cut(s) 309
NdeII GATC 1 cut(s) 578
NlaIII CATG 2 cut(s) 313, 400
NlaIV GGNNCC 4 cut(s) 125, 206, 273, 293
NspI RCATGY 1 cut(s) 400
NspV TTCGAA 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 533
PfeI GAWTC 2 cut(s) 427, 470
PflFI GACNNNGTC 1 cut(s) 569
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 4 cut(s) 7, 137, 200, 256
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
Ppu21I YACGTR 1 cut(s) 510
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 4 cut(s) 125, 206, 273, 293
PspPI GGNCC 5 cut(s) 123, 145, 239, 244, 271
PspPPI RGGWCCY 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 569
RsaI GTAC 3 cut(s) 302, 512, 611
RsaNI GTAC 3 cut(s) 301, 511, 610
RseI CAYNNNNRTG 1 cut(s) 401
SacII CCGCGG 1 cut(s) 258
SatI GCNGC 4 cut(s) 6, 136, 199, 255
Sau3AI GATC 1 cut(s) 578
Sau96I GGNCC 5 cut(s) 123, 145, 239, 244, 271
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 5 cut(s) 132, 238, 243, 288, 485
SduI GDGCHC 2 cut(s) 284, 294
SetI ASST 9 cut(s) 10, 388, 394, 466, 486, 501, 512, 526, 562
SfaNI GCATC 2 cut(s) 453, 501
SfcI CTRYAG 1 cut(s) 439
Sfr274I CTCGAG 1 cut(s) 533
Sfr303I CCGCGG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 38
SgrBI CCGCGG 1 cut(s) 258
SinI GGWCC 2 cut(s) 123, 271
SlaI CTCGAG 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SnaBI TACGTA 1 cut(s) 510
Sse9I AATT 4 cut(s) 40, 139, 226, 550
SspMI CTAG 2 cut(s) 434, 613
StyD4I CCNGG 5 cut(s) 130, 236, 241, 286, 483
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 512
TaqI TCGA 3 cut(s) 38, 192, 534
TasI AATT 4 cut(s) 40, 139, 226, 550
TatI WGTACW 1 cut(s) 609
TauI GCSGC 3 cut(s) 138, 201, 257
TfiI GAWTC 2 cut(s) 427, 470
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 222
Tth111I GACNNNGTC 1 cut(s) 569
Van91I CCANNNNNTGG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 123, 271
XapI RAATTY 3 cut(s) 40, 226, 550
XceI RCATGY 1 cut(s) 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XhoI CTCGAG 1 cut(s) 533
XspI CTAG 2 cut(s) 434, 613
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.