pycom06g06060
WRKY Family

Plant zinc cluster domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016930
Physical Location & Seq
Forward (+)
9285747 .. 9287149
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06060.2

Sequence Viewer

Length: 957 bp
ATGGAAAGGGAATCAGGTGTCTGTCTTTCAATGAACCCAGGGTTGGATTTCAGAATTCATGAGGTTGCTCAAAGCAGTTTGAAGCATGCCCATCGCCTCTTTGGTTCCATCTCTGAGAAAAAGCATAAGAGAAGTGCTCAAGAAGTAAGCCTGGTTGCTCAAGATGCAGTAAATGAATTCCGCAAACTGCTTACTCTCCTTGATGGATCAATCTTATCAAATCAGAAGAGGATCAGAAGGGGTCCACTGCCCGAATCCCGTGGCATAAACCAGGTTGAACTGTTGGAATCCCATCAGCCTAGCTCAGGGTTTAGACAGTTGTTTAGTAATACTCATCAGAGTGATCATGCAGCTGCAAATGTGTTCCGAAGTAATGGCTTTAGCATGGTTAGAGAGCGAAAACCGAGCCTGGCATTGCAACAAGGCCACTGTGAAACCAGTGTGGTTCTTCCTAATAATTTGATCATGGGTTCGAACCAATTCTCACAGAAGCCTAGTACTTCTTTGATTAGTATGGACGGAAGTAGCATCAACACGCAGACGCGGATGATTCACTATTCTTCGTCTGAACTCTTTGCTTCTCAAGATAGCGGCTCTATGTTTTCTTCTAAAAAGAAGTGTGAAGAAGCCAGTACAAGATGTTTAGCCTCTACCGGTGGATGTCATTGCTCAAAGAGAAGGAAACTGAGAATAAAGAGAAGAATACGAGTTCCGGCCGTAAGCAATAAGCTAGCTGATATACCTCCTGATGACTATTCTTGGAGGAAGTATGGGCAGAAGCCTATCAAAGGGTCTCCATATCCTAGGAGTTATTACAAATGCAGCTGTGTGCGAGGATGTCCTGCACGAAAGCATGTCGAACGATGCTTGGAGGATCCTAACATGTTGGTTGTTACATATGAAGGCAATCATCAACACCCAAGGTTTACATTTCAAGCACCCTCTGTTGCGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_zn_clust WRKY

Protein Analysis

319

Amino Acids

35.71

Weight (kDa)

9.79

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016930)

Species Orthologous Gene IDs
malus_domestica MD06G1062800.v1.1
prunus_persica Prupe.5G074200_v2.0.a1
pyrus_communis pycom06g06060
rosa_chinensis RchiOBHm_Chr7g0202671
rosa_laevigata RLG00000003582
rosa_roxburghii Rroxscaffold_3G00254420
rosa_rugosa Rorug07G0071700 Rorug07G0071800 Rorug07G0071900
rosa_samantha Rh7AG199600 Rh7BG200400 Rh7CG211100 Rh7DG206500
rosa_wichuraiana Rw7G017480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 544
AciI CCGC 3 cut(s) 181, 544, 591
AclWI GGATC 4 cut(s) 214, 239, 869, 882
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 2 cut(s) 54, 176
AfaI GTAC 2 cut(s) 499, 634
AfiI CCNNNNNNNGG 3 cut(s) 43, 305, 788
AflIII ACRYGT 1 cut(s) 882
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 4 cut(s) 30, 82, 278, 935
AjnI CCWGG 4 cut(s) 37, 150, 270, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 5 cut(s) 303, 353, 730, 734, 825
AluI AGCT 5 cut(s) 303, 353, 730, 734, 825
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 798
AlwI GGATC 4 cut(s) 214, 239, 869, 882
AoxI GGCC 2 cut(s) 424, 714
ApeKI GCWGC 3 cut(s) 350, 353, 822
ApoI RAATTY 2 cut(s) 54, 176
AsiGI ACCGGT 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 479
AspA2I CCTAGG 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 242
AsuII TTCGAA 1 cut(s) 473
AsuNHI GCTAGC 1 cut(s) 730
AvaII GGWCC 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 803
BamHI GGATCC 1 cut(s) 874
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 340, 362, 834
BccI CCATC 4 cut(s) 99, 116, 197, 300
BceAI ACGGC 1 cut(s) 701
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 4 cut(s) 39, 152, 272, 410
BclI TGATCA 2 cut(s) 343, 462
BcoDI GTCTC 1 cut(s) 798
BfaI CTAG 4 cut(s) 300, 495, 731, 804
BisI GCNGC 4 cut(s) 351, 354, 592, 823
BlnI CCTAGG 1 cut(s) 803
BlsI GCNGC 4 cut(s) 352, 355, 593, 824
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 4 cut(s) 39, 152, 272, 410
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 106, 243, 876
BmrFI CCNGG 4 cut(s) 39, 152, 272, 410
BmsI GCATC 3 cut(s) 154, 537, 854
BmtI GCTAGC 1 cut(s) 734
BplI GAGNNNNNCTC 2 cut(s) 121, 153
Bpu10I CCTNAGC 1 cut(s) 304
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 3 cut(s) 123, 144, 567
BsaI GGTCTC 1 cut(s) 798
BsaJI CCNNGG 5 cut(s) 37, 38, 259, 803, 920
BsaWI WCCGGW 1 cut(s) 653
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 305, 788
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 438, 630
Bse3DI GCAATG 2 cut(s) 413, 664
BseBI CCWGG 4 cut(s) 39, 152, 272, 410
BseDI CCNNGG 5 cut(s) 37, 38, 259, 803, 920
BseGI GGATG 3 cut(s) 552, 665, 842
BseLI CCNNNNNNNGG 3 cut(s) 43, 305, 788
BseMI GCAATG 2 cut(s) 413, 664
BseMII CTCAG 3 cut(s) 105, 318, 677
BseNI ACTGG 2 cut(s) 438, 630
BseX3I CGGCCG 1 cut(s) 714
BseXI GCAGC 3 cut(s) 340, 362, 834
BsgI GTGCAG 1 cut(s) 828
Bsh1236I CGCG 1 cut(s) 544
Bsh1285I CGRYCG 1 cut(s) 717
BshFI GGCC 2 cut(s) 426, 716
BshTI ACCGGT 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 717
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 654, 713
BslI CCNNNNNNNGG 3 cut(s) 43, 305, 788
BsmAI GTCTC 1 cut(s) 798
BsnI GGCC 2 cut(s) 426, 716
Bso31I GGTCTC 1 cut(s) 798
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 5 cut(s) 206, 231, 343, 462, 874
BspACI CCGC 3 cut(s) 181, 544, 591
BspANI GGCC 2 cut(s) 426, 716
BspCNI CTCAG 3 cut(s) 106, 317, 678
BspFNI CGCG 1 cut(s) 544
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 106, 243, 876
BspOI GCTAGC 1 cut(s) 734
BspPI GGATC 4 cut(s) 214, 239, 869, 882
BspT104I TTCGAA 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 798
BsrDI GCAATG 2 cut(s) 413, 664
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 2 cut(s) 438, 630
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 5 cut(s) 37, 38, 259, 803, 920
BssMI GATC 5 cut(s) 206, 231, 343, 462, 874
BssT1I CCWWGG 2 cut(s) 803, 920
Bst2UI CCWGG 4 cut(s) 39, 152, 272, 410
Bst4CI ACNGT 3 cut(s) 282, 318, 431
Bst6I CTCTTC 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 87, 732
BstDEI CTNAG 3 cut(s) 114, 304, 686
BstDSI CCRYGG 1 cut(s) 259
BstENI CCTNNNNNAGG 2 cut(s) 303, 786
BstF5I GGATG 3 cut(s) 552, 665, 842
BstFNI CGCG 1 cut(s) 544
BstKTI GATC 5 cut(s) 209, 234, 346, 465, 877
BstMAI GTCTC 1 cut(s) 798
BstMBI GATC 5 cut(s) 206, 231, 343, 462, 874
BstMCI CGRYCG 1 cut(s) 717
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 4 cut(s) 39, 152, 272, 410
BstNSI RCATGY 3 cut(s) 89, 857, 886
BstSCI CCNGG 4 cut(s) 37, 150, 270, 408
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 3 cut(s) 340, 362, 834
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BstZI CGGCCG 1 cut(s) 714
BsuRI GGCC 2 cut(s) 426, 716
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 3 cut(s) 552, 665, 842
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 3 cut(s) 245, 427, 445
Cac8I GCNNGC 2 cut(s) 87, 732
CciI TCATGA 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 550
CsiI ACCWGGT 1 cut(s) 270
Csp6I GTAC 2 cut(s) 498, 633
CspAI ACCGGT 1 cut(s) 653
CviAII CATG 7 cut(s) 59, 86, 347, 385, 466, 854, 883
CviQI GTAC 2 cut(s) 498, 633
DdeI CTNAG 3 cut(s) 114, 304, 686
DpnI GATC 5 cut(s) 208, 233, 345, 464, 876
DpnII GATC 5 cut(s) 206, 231, 343, 462, 874
EaeI YGGCCR 1 cut(s) 714
EagI CGGCCG 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EclXI CGGCCG 1 cut(s) 714
Eco130I CCWWGG 2 cut(s) 803, 920
Eco31I GGTCTC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 242
Eco52I CGGCCG 1 cut(s) 714
EcoNI CCTNNNNNAGG 2 cut(s) 303, 786
EcoRI GAATTC 2 cut(s) 54, 176
EcoRII CCWGG 4 cut(s) 37, 150, 270, 408
EcoT14I CCWWGG 2 cut(s) 803, 920
ErhI CCWWGG 2 cut(s) 803, 920
FaeI CATG 7 cut(s) 62, 89, 350, 388, 469, 857, 886
FatI CATG 7 cut(s) 58, 85, 346, 384, 465, 853, 882
FauNDI CATATG 1 cut(s) 898
FbaI TGATCA 2 cut(s) 343, 462
Fnu4HI GCNGC 4 cut(s) 351, 354, 592, 823
FokI GGATG 3 cut(s) 559, 672, 849
Fsp4HI GCNGC 4 cut(s) 351, 354, 592, 823
FspBI CTAG 4 cut(s) 300, 495, 731, 804
GluI GCNGC 4 cut(s) 351, 354, 592, 823
HaeIII GGCC 2 cut(s) 426, 716
HapII CCGG 2 cut(s) 654, 713
HgaI GACGC 1 cut(s) 550
Hin1II CATG 7 cut(s) 62, 89, 350, 388, 469, 857, 886
HinfI GANTC 4 cut(s) 11, 254, 287, 550
HpaII CCGG 2 cut(s) 654, 713
Hpy166II GTNNAC 2 cut(s) 245, 927
Hpy188I TCNGA 7 cut(s) 53, 115, 225, 236, 339, 368, 568
Hpy188III TCNNGA 5 cut(s) 59, 140, 161, 584, 746
Hpy8I GTNNAC 2 cut(s) 245, 927
HpyAV CCTTC 3 cut(s) 231, 672, 896
HpyCH4III ACNGT 3 cut(s) 282, 318, 431
HpyCH4V TGCA 6 cut(s) 167, 350, 356, 418, 822, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 114, 304, 686
Hsp92II CATG 7 cut(s) 62, 89, 350, 388, 469, 857, 886
Ksp22I TGATCA 2 cut(s) 343, 462
Kzo9I GATC 5 cut(s) 206, 231, 343, 462, 874
Lsp1109I GCAGC 3 cut(s) 340, 362, 834
LweI GCATC 3 cut(s) 154, 537, 854
MabI ACCWGGT 1 cut(s) 270
MaeI CTAG 4 cut(s) 300, 495, 731, 804
MaeIII GTNAC 1 cut(s) 892
MalI GATC 5 cut(s) 208, 233, 345, 464, 876
MboI GATC 5 cut(s) 206, 231, 343, 462, 874
MboII GAAGA 6 cut(s) 238, 440, 552, 597, 635, 711
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 4 cut(s) 54, 176, 457, 479
MmeI TCCRAC 2 cut(s) 24, 264
MnlI CCTC 9 cut(s) 55, 107, 222, 658, 753, 756, 827, 865, 952
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 1 cut(s) 955
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 2 cut(s) 353, 825
MspI CCGG 2 cut(s) 654, 713
MspR9I CCNGG 4 cut(s) 39, 152, 272, 410
MvaI CCWGG 4 cut(s) 39, 152, 272, 410
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 898
NdeII GATC 5 cut(s) 206, 231, 343, 462, 874
NheI GCTAGC 1 cut(s) 730
NlaIII CATG 7 cut(s) 62, 89, 350, 388, 469, 857, 886
NlaIV GGNNCC 3 cut(s) 106, 243, 876
NspI RCATGY 3 cut(s) 89, 857, 886
NspV TTCGAA 1 cut(s) 473
PaeI GCATGC 1 cut(s) 89
PagI TCATGA 1 cut(s) 58
PasI CCCWGGG 1 cut(s) 38
PciI ACATGT 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 11, 254, 287, 550
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 4 cut(s) 352, 355, 593, 824
PscI ACATGT 1 cut(s) 882
Psp6I CCWGG 4 cut(s) 37, 150, 270, 408
PspGI CCWGG 4 cut(s) 37, 150, 270, 408
PspN4I GGNNCC 3 cut(s) 106, 243, 876
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 874
PvuII CAGCTG 2 cut(s) 353, 825
RsaI GTAC 2 cut(s) 499, 634
RsaNI GTAC 2 cut(s) 498, 633
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 955
SatI GCNGC 4 cut(s) 351, 354, 592, 823
Sau3AI GATC 5 cut(s) 206, 231, 343, 462, 874
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 1 cut(s) 499
ScrFI CCNGG 4 cut(s) 39, 152, 272, 410
SduI GDGCHC 1 cut(s) 139
SexAI ACCWGGT 1 cut(s) 270
SfaNI GCATC 3 cut(s) 154, 537, 854
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 3 cut(s) 138, 159, 582
SmoI CTYRAG 3 cut(s) 138, 159, 582
SphI GCATGC 1 cut(s) 89
Sse9I AATT 4 cut(s) 54, 176, 457, 479
SsiI CCGC 3 cut(s) 181, 544, 591
SspMI CTAG 4 cut(s) 300, 495, 731, 804
StyD4I CCNGG 4 cut(s) 37, 150, 270, 408
StyI CCWWGG 2 cut(s) 803, 920
TaaI ACNGT 3 cut(s) 282, 318, 431
TaqI TCGA 2 cut(s) 473, 858
TasI AATT 4 cut(s) 54, 176, 457, 479
TatI WGTACW 2 cut(s) 497, 632
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 4 cut(s) 11, 254, 287, 550
Tru1I TTAA 1 cut(s) 955
Tru9I TTAA 1 cut(s) 955
TscAI CASTG 3 cut(s) 252, 434, 445
TseI GCWGC 3 cut(s) 350, 353, 822
TspDTI ATGAA 4 cut(s) 47, 47, 189, 915
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 3 cut(s) 252, 434, 445
VpaK11BI GGWCC 1 cut(s) 242
XagI CCTNNNNNAGG 2 cut(s) 303, 786
XapI RAATTY 2 cut(s) 54, 176
XceI RCATGY 3 cut(s) 89, 857, 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmaJI CCTAGG 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 4 cut(s) 300, 495, 731, 804
ZrmI AGTACT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.