MD06G1070100.v1.1
TCP Family

Transcription factor TCP9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016324
Physical Location & Seq
Forward (+)
16974738 .. 16975295
558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1070100.v1.1.491

Sequence Viewer

Length: 558 bp
ATGGTGCCTGTGGCTATGCCCATGCCCATGTCCGTGCCCTCAACCGTCTCCACCCTGATCCGACGCTCTTCCACCAAGGACCGCCATACCAAAGTCGAGGGGCGCGGGCGGAGGATCAGAGTACCCGCCACGTGCGCTGCCAGGATCTTCCAGCTGACCCGGGAACTCGGGAACGAGTCCGACGGAGAAACAGTCCGGTGGCTGCTCGAACACGCAGAGCAAGCCATCATCGAGGCCACCGGCACAGGGACCGTTCCTGCCATTGCTGTCTCCGTCGGCGGGAGCCTCAAGATACCCACCACCGCATCCACGTCGGTCGAGGATAACTCCTCACCACCCTCCTCAACCAAGAAGCAAAAACGCCCCTCCAATTCCGAGTTCTTGGACGTGGAAAACGACGCCGTGTCGCAGTCGTCGGGTCTTGCTCCGGTGGGTCCCTCCGTGCCACAAGGTCTTGTTCCGGTGTGGGCCGTGGGCGGCCCCGGGTTGATGGTTCCGGCAAATGCGTTATGGATTGGCCCTGTGGGGTCGGGGGCCGGACCTTCAGGCCAACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

186

Amino Acids

19.13

Weight (kDa)

8.97

Isoelectric Point (pI)

67.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 24 - 121 4.8e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016324)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01340
malus_domestica MD04G1069300.v1.1 MD06G1070100.v1.1
prunus_persica Prupe.5G088800_v2.0.a1
pyrus_communis pycom04g06310 pycom06g07040
rosa_chinensis RchiOBHm_Chr7g0199561
rosa_laevigata RLG00000003785
rosa_roxburghii Rroxscaffold_3G00256610
rosa_rugosa Rorug07G0055300
rosa_samantha Rh7AG180100 Rh7BG183300 Rh7CG189100 Rh7DG182800
rosa_wichuraiana Rw7G015820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 105
AciI CCGC 7 cut(s) 82, 105, 109, 126, 279, 303, 477
AclWI GGATC 3 cut(s) 52, 122, 152
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 246, 279
AhdI GACNNNNNGTC 1 cut(s) 403
AjiI CACGTC 2 cut(s) 312, 388
AjnI CCWGG 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 52, 274
AlwI GGATC 3 cut(s) 52, 122, 152
Ama87I CYCGRG 3 cut(s) 159, 167, 482
AoxI GGCC 6 cut(s) 234, 468, 478, 517, 534, 547
ApeKI GCWGC 2 cut(s) 137, 202
AspLEI GCGC 2 cut(s) 105, 137
AspS9I GGNCC 8 cut(s) 79, 249, 434, 468, 479, 518, 534, 539
AsuC2I CCSGG 4 cut(s) 160, 161, 483, 484
AsuHPI GGTGA 1 cut(s) 324
AvaI CYCGRG 3 cut(s) 159, 167, 482
AvaII GGWCC 4 cut(s) 79, 249, 434, 539
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 4
BbrPI CACGTG 1 cut(s) 132
BbvI GCAGC 2 cut(s) 124, 189
BccI CCATC 2 cut(s) 233, 484
BceAI ACGGC 2 cut(s) 386, 455
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciT130I CCWGG 1 cut(s) 142
BcnI CCSGG 4 cut(s) 160, 161, 483, 484
BcoDI GTCTC 2 cut(s) 52, 274
BisI GCNGC 3 cut(s) 138, 203, 478
BlsI GCNGC 3 cut(s) 139, 204, 479
Bme1390I CCNGG 5 cut(s) 142, 160, 161, 483, 484
Bme18I GGWCC 4 cut(s) 79, 249, 434, 539
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 3 cut(s) 159, 167, 482
BmgBI CACGTC 2 cut(s) 312, 388
BmgT120I GGNCC 8 cut(s) 79, 249, 434, 468, 479, 518, 534, 539
BmiI GGNNCC 8 cut(s) 6, 250, 284, 435, 436, 481, 495, 535
BmrFI CCNGG 5 cut(s) 142, 160, 161, 483, 484
BmsI GCATC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 4 cut(s) 160, 161, 483, 484
BsaAI YACGTR 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 399
BsaJI CCNNGG 5 cut(s) 75, 159, 471, 481, 482
BsaWI WCCGGW 3 cut(s) 195, 427, 460
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 279
Bse118I RCCGGY 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 5 cut(s) 75, 159, 471, 481, 482
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 246, 279
BseMI GCAATG 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 319, 331
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 2 cut(s) 124, 189
Bsh1236I CGCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 6 cut(s) 236, 470, 480, 519, 536, 549
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 318
BsiHKCI CYCGRG 3 cut(s) 159, 167, 482
BsiSI CCGG 8 cut(s) 160, 196, 240, 428, 461, 483, 497, 537
BslFI GGGAC 2 cut(s) 262, 420
BslI CCNNNNNNNGG 2 cut(s) 246, 279
BsmAI GTCTC 2 cut(s) 52, 274
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 262, 420
BsnI GGCC 6 cut(s) 236, 470, 480, 519, 536, 549
BsoBI CYCGRG 3 cut(s) 159, 167, 482
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 57, 114, 144
BspACI CCGC 7 cut(s) 82, 105, 109, 126, 279, 303, 477
BspANI GGCC 6 cut(s) 236, 470, 480, 519, 536, 549
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 8 cut(s) 6, 250, 284, 435, 436, 481, 495, 535
BspPI GGATC 3 cut(s) 52, 122, 152
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 5 cut(s) 75, 159, 471, 481, 482
BssMI GATC 3 cut(s) 57, 114, 144
BssNI GRCGYC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 4 cut(s) 46, 193, 253, 555
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 107, 222
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 2 cut(s) 105, 137
BstKTI GATC 3 cut(s) 60, 117, 147
BstMAI GTCTC 2 cut(s) 52, 274
BstMBI GATC 3 cut(s) 57, 114, 144
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 134, 221
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 5 cut(s) 140, 158, 159, 481, 482
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 124, 189
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 6 cut(s) 236, 470, 480, 519, 536, 549
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 2 cut(s) 312, 388
BtsCI GGATG 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 107, 222
CfoI GCGC 2 cut(s) 105, 137
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 8 cut(s) 79, 249, 434, 468, 479, 518, 534, 539
Cfr9I CCCGGG 2 cut(s) 159, 482
CseI GACGC 2 cut(s) 72, 407
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 22, 28
CviQI GTAC 1 cut(s) 122
DpnI GATC 3 cut(s) 59, 116, 146
DpnII GATC 3 cut(s) 57, 114, 144
DriI GACNNNNNGTC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 73
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 73
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 4 cut(s) 79, 249, 434, 539
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 132
Eco88I CYCGRG 3 cut(s) 159, 167, 482
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 2 cut(s) 25, 31
FaiI YATR 5 cut(s) 17, 23, 29, 87, 511
FaqI GGGAC 2 cut(s) 262, 420
FatI CATG 2 cut(s) 21, 27
FauI CCCGC 3 cut(s) 98, 133, 272
Fnu4HI GCNGC 3 cut(s) 138, 203, 478
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 3 cut(s) 138, 203, 478
GlaI GCGC 2 cut(s) 104, 136
GluI GCNGC 3 cut(s) 138, 203, 478
HaeIII GGCC 6 cut(s) 236, 470, 480, 519, 536, 549
HapII CCGG 8 cut(s) 160, 196, 240, 428, 461, 483, 497, 537
HgaI GACGC 2 cut(s) 72, 407
HhaI GCGC 2 cut(s) 105, 137
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 2 cut(s) 25, 31
Hin6I GCGC 2 cut(s) 103, 135
HinP1I GCGC 2 cut(s) 103, 135
HinfI GANTC 1 cut(s) 176
HpaII CCGG 8 cut(s) 160, 196, 240, 428, 461, 483, 497, 537
HphI GGTGA 1 cut(s) 324
Hpy188I TCNGA 4 cut(s) 62, 119, 181, 376
Hpy188III TCNNGA 2 cut(s) 169, 289
Hpy99I CGWCG 6 cut(s) 66, 185, 278, 316, 401, 418
HpyAV CCTTC 1 cut(s) 552
HpyCH4III ACNGT 4 cut(s) 46, 193, 253, 555
HpyCH4IV ACGT 3 cut(s) 131, 311, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 221
HpySE526I ACGT 3 cut(s) 131, 311, 387
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 2 cut(s) 25, 31
HspAI GCGC 2 cut(s) 103, 135
KflI GGGWCCC 1 cut(s) 434
Kzo9I GATC 3 cut(s) 57, 114, 144
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 282, 430
Lsp1109I GCAGC 2 cut(s) 124, 189
LweI GCATC 1 cut(s) 314
MaeII ACGT 3 cut(s) 131, 311, 387
MalI GATC 3 cut(s) 59, 116, 146
MboI GATC 3 cut(s) 57, 114, 144
MboII GAAGA 2 cut(s) 60, 139
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 370
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 85, 204
MslI CAYNNNNRTG 2 cut(s) 26, 32
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 8 cut(s) 160, 196, 240, 428, 461, 483, 497, 537
MspR9I CCNGG 5 cut(s) 142, 160, 161, 483, 484
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 134, 221
NciI CCSGG 4 cut(s) 160, 161, 483, 484
NdeII GATC 3 cut(s) 57, 114, 144
NlaIII CATG 2 cut(s) 25, 31
NlaIV GGNNCC 8 cut(s) 6, 250, 284, 435, 436, 481, 495, 535
PciSI GCTCTTC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PkrI GCNGC 3 cut(s) 139, 204, 479
PleI GAGTC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 140
PspCI CACGTG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 8 cut(s) 6, 250, 284, 435, 436, 481, 495, 535
PspPI GGNCC 8 cut(s) 79, 249, 434, 468, 479, 518, 534, 539
PspPPI RGGWCCY 1 cut(s) 434
PsuI RGATCY 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 2 cut(s) 26, 32
SapI GCTCTTC 1 cut(s) 73
SatI GCNGC 3 cut(s) 138, 203, 478
Sau3AI GATC 3 cut(s) 57, 114, 144
Sau96I GGNCC 8 cut(s) 79, 249, 434, 468, 479, 518, 534, 539
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 5 cut(s) 142, 160, 161, 483, 484
SduI GDGCHC 1 cut(s) 39
SetI ASST 6 cut(s) 134, 156, 314, 390, 454, 544
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 4 cut(s) 79, 249, 434, 539
SmaI CCCGGG 2 cut(s) 161, 484
SmiMI CAYNNNNRTG 2 cut(s) 26, 32
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 370
SsiI CCGC 7 cut(s) 82, 105, 109, 126, 279, 303, 477
StyD4I CCNGG 5 cut(s) 140, 158, 159, 481, 482
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 4 cut(s) 46, 193, 253, 555
TaiI ACGT 3 cut(s) 134, 314, 390
TaqI TCGA 4 cut(s) 96, 207, 231, 318
TaqII GACCGA 1 cut(s) 304
TasI AATT 1 cut(s) 370
TauI GCSGC 1 cut(s) 480
TseI GCWGC 2 cut(s) 137, 202
TspGWI ACGGA 4 cut(s) 22, 198, 262, 430
TspMI CCCGGG 2 cut(s) 159, 482
VpaK11BI GGWCC 4 cut(s) 79, 249, 434, 539
XmaI CCCGGG 2 cut(s) 159, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.