pycom06g07040
TCP Family

Transcription factor TCP9-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
11409319 .. 11410452
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07040.1

Sequence Viewer

Length: 1134 bp
ATGACGTCGTACTCGGAGGATCAGGACGACGACGGAGGCGCTTCTGATCTCAGCACCAGCACCGGAGACCTGGGAGACAACAACCATACCAACAGAGACGGTGTCGTTTCGACGCAACTCCACTACGACGAAACGACGGAGTTCCATTCGCTCAAGGAGGAGCCCATTGACTCCGACCCACCACAACCACCGCAGGCTTACCCCATCGGAATGGTCCCGGTGGCTATGCCCATGCCCATGTCCGTGCCCTCAGCCGTCTCCACCCTGACCCGACGATCTTCCACCAAGGACCGCCATACCAAAGTCGAGGGCCGCGGGCGGAGGATCAGAATACCCGCCACGTGCGCTGCCAGGATCTTCCAGCTGACCCGGGAACTCGGGCACAAGTCCGACGGAGAAACAGTCCGGTGGCTGCTCGAACACGCCGAGCAAGCCATCATCGAGGCCACCGGCACAGGGACCGTTCCTGCCATCGCTGTCTCCGTCGGCGGGACCCTCAAGATACCCACCACCGCATCCACGTCGGTCGAGGACAACTCCTCACCACCCTACTCAACCAAGAAGCGAAAACGCCCCTCCAATTCCGAGTTCGTGGACGTGAAAAACGACGCCGTGTCGCAGTCGTCGGGTCTTGCTCCGGTGAGTCCCTCCGTGCCACAAGGTCTTGTTCCGGTGTGGGCCGTGGGCGGCACCGGGTTGATGGTTCCGGCAAATGCGTTATGGATTGGCCCTGTGGGGTCGGTGGCCGGACCTTCAGGCCAACCGCAGATATGGGCCCTCTCTCCGACGATGACGCCGGTTTTCAACATGGCAGGAGCATCCCGGCCCATATCGAGTTTCGTGGCGAACAGCGGAGGAGGAGGAGCAGGAGTAGTGGATGTTCGGGCTCCATCTCCGGCGCTGTCGAACTCAGCGGCGAATACGAGCACGGTGGGACCGAGGGCGGCGATGTGGTCGTCGACGACAATGGCGCCGAGCGTGAGCTCCTCCAGTCACAACAGTAACGGCAGCGGAAACGGCGCGACGACCAAGAGTCAGATGCTTAGGGATTTTTCTCTACAAATTTACGATAAGCAGGAGTTGCAGTTAATGGGTCGACCAGTTGGACCGGAAAATCATAACCAAACCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

378

Amino Acids

39.43

Weight (kDa)

5.91

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 94 - 180 9.3e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016324)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 689, 970
AccI GTMKAC 2 cut(s) 959, 1096
AccII CGCG 2 cut(s) 315, 1022
AclWI GGATC 3 cut(s) 27, 332, 362
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 1 cut(s) 1062
AcuI CTGAAG 1 cut(s) 738
AcvI CACGTG 1 cut(s) 342
AcyI GRCGYC 4 cut(s) 5, 609, 794, 971
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 456, 489
AgsI TTSAA 1 cut(s) 805
AhdI GACNNNNNGTC 2 cut(s) 613, 1032
AjiI CACGTC 2 cut(s) 522, 598
AjnI CCWGG 2 cut(s) 69, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 2 cut(s) 364, 984
AluI AGCT 2 cut(s) 364, 984
Alw21I GWGCWC 2 cut(s) 929, 986
Alw26I GTCTC 5 cut(s) 60, 69, 90, 262, 484
AlwI GGATC 3 cut(s) 27, 332, 362
Ama87I CYCGRG 2 cut(s) 369, 377
AoxI GGCC 8 cut(s) 310, 444, 678, 727, 744, 757, 774, 824
ApaI GGGCCC 1 cut(s) 778
ApeKI GCWGC 3 cut(s) 347, 412, 1008
ApoI RAATTY 1 cut(s) 1062
AspLEI GCGC 5 cut(s) 41, 347, 901, 973, 1022
AsuC2I CCSGG 5 cut(s) 218, 370, 371, 694, 823
AsuHPI GGTGA 2 cut(s) 534, 652
AvaI CYCGRG 2 cut(s) 369, 377
AvaII GGWCC 7 cut(s) 214, 289, 459, 492, 749, 935, 1106
BaeGI GKGCMC 3 cut(s) 249, 384, 778
BanI GGYRCC 2 cut(s) 689, 970
BanII GRGCYC 4 cut(s) 165, 778, 889, 986
BbrPI CACGTG 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 929, 986
BbvCI CCTCAGC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 334, 399, 1020
BccI CCATC 5 cut(s) 212, 443, 479, 694, 898
BceAI ACGGC 5 cut(s) 239, 596, 665, 1021, 1033
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BciT130I CCWGG 2 cut(s) 71, 352
BcnI CCSGG 5 cut(s) 218, 370, 371, 694, 823
BcoDI GTCTC 5 cut(s) 60, 69, 90, 262, 484
BfoI RGCGCY 3 cut(s) 42, 902, 974
BisI GCNGC 7 cut(s) 313, 348, 413, 688, 915, 945, 1009
BlsI GCNGC 7 cut(s) 314, 349, 414, 689, 916, 946, 1010
Bme1390I CCNGG 7 cut(s) 71, 218, 352, 370, 371, 694, 823
Bme18I GGWCC 7 cut(s) 214, 289, 459, 492, 749, 935, 1106
BmeRI GACNNNNNGTC 2 cut(s) 613, 1032
BmeT110I CYCGRG 2 cut(s) 369, 377
BmgBI CACGTC 2 cut(s) 522, 598
BmrFI CCNGG 7 cut(s) 71, 218, 352, 370, 371, 694, 823
BmrI ACTGGG 1 cut(s) 1123
BmsI GCATC 3 cut(s) 524, 827, 1029
BmuI ACTGGG 1 cut(s) 1123
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpmI CTGGAG 1 cut(s) 973
Bpu10I CCTNAGC 2 cut(s) 250, 1043
BpuEI CTTGAG 2 cut(s) 137, 482
BpuMI CCSGG 5 cut(s) 218, 370, 371, 694, 823
BsaAI YACGTR 1 cut(s) 342
BsaHI GRCGYC 4 cut(s) 5, 609, 794, 971
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 6 cut(s) 70, 285, 313, 369, 681, 938
BsaWI WCCGGW 5 cut(s) 62, 405, 637, 670, 1108
BsaXI ACNNNNNCTCC 6 cut(s) 387, 417, 855, 885, 1070, 1100
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 489
Bse118I RCCGGY 2 cut(s) 449, 796
Bse1I ACTGG 3 cut(s) 990, 1100, 1129
BseBI CCWGG 2 cut(s) 71, 352
BseDI CCNNGG 6 cut(s) 70, 285, 313, 369, 681, 938
BseGI GGATG 3 cut(s) 515, 818, 883
BseLI CCNNNNNNNGG 2 cut(s) 456, 489
BseMII CTCAG 3 cut(s) 64, 264, 924
BseNI ACTGG 3 cut(s) 990, 1100, 1129
BseRI GAGGAG 6 cut(s) 173, 529, 870, 873, 876, 976
BseSI GKGCMC 3 cut(s) 249, 384, 778
BseXI GCAGC 3 cut(s) 334, 399, 1020
Bsh1236I CGCG 2 cut(s) 315, 1022
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 8 cut(s) 312, 446, 680, 729, 746, 759, 776, 826
BshNI GGYRCC 2 cut(s) 689, 970
BsiEI CGRYCG 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 929, 986
BsiHKCI CYCGRG 2 cut(s) 369, 377
BslFI GGGAC 5 cut(s) 200, 472, 505, 630, 948
BslI CCNNNNNNNGG 2 cut(s) 456, 489
BsmAI GTCTC 5 cut(s) 60, 69, 90, 262, 484
BsmBI CGTCTC 2 cut(s) 90, 262
BsmFI GGGAC 5 cut(s) 200, 472, 505, 630, 948
BsnI GGCC 8 cut(s) 312, 446, 680, 729, 746, 759, 776, 826
Bso31I GGTCTC 1 cut(s) 60
BsoBI CYCGRG 2 cut(s) 369, 377
Bsp120I GGGCCC 1 cut(s) 774
Bsp1286I GDGCHC 7 cut(s) 165, 249, 384, 778, 889, 929, 986
Bsp143I GATC 5 cut(s) 19, 46, 275, 324, 354
BspANI GGCC 8 cut(s) 312, 446, 680, 729, 746, 759, 776, 826
BspCNI CTCAG 3 cut(s) 63, 263, 923
BspFNI CGCG 2 cut(s) 315, 1022
BspPI GGATC 3 cut(s) 27, 332, 362
BspT107I GGYRCC 2 cut(s) 689, 970
BspTNI GGTCTC 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 449, 796
BsrI ACTGG 3 cut(s) 990, 1100, 1129
BssAI RCCGGY 2 cut(s) 449, 796
BssECI CCNNGG 6 cut(s) 70, 285, 313, 369, 681, 938
BssMI GATC 5 cut(s) 19, 46, 275, 324, 354
BssNI GRCGYC 4 cut(s) 5, 609, 794, 971
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 71, 352
Bst4CI ACNGT 5 cut(s) 101, 403, 463, 931, 1001
BstACI GRCGYC 4 cut(s) 5, 609, 794, 971
BstAPI GCANNNNNTGC 1 cut(s) 1081
BstBAI YACGTR 1 cut(s) 342
BstC8I GCNNGC 3 cut(s) 195, 317, 432
BstDEI CTNAG 4 cut(s) 50, 250, 910, 1043
BstDSI CCRYGG 2 cut(s) 313, 681
BstF5I GGATG 3 cut(s) 515, 818, 883
BstFNI CGCG 2 cut(s) 315, 1022
BstH2I RGCGCY 3 cut(s) 42, 902, 974
BstHHI GCGC 5 cut(s) 41, 347, 901, 973, 1022
BstKTI GATC 5 cut(s) 22, 49, 278, 327, 357
BstMAI GTCTC 5 cut(s) 60, 69, 90, 262, 484
BstMBI GATC 5 cut(s) 19, 46, 275, 324, 354
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 4 cut(s) 344, 431, 1017, 1081
BstNI CCWGG 2 cut(s) 71, 352
BstSCI CCNGG 7 cut(s) 69, 216, 350, 368, 369, 692, 821
BstSLI GKGCMC 3 cut(s) 249, 384, 778
BstUI CGCG 2 cut(s) 315, 1022
BstV1I GCAGC 3 cut(s) 334, 399, 1020
BstX2I RGATCY 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 8 cut(s) 312, 446, 680, 729, 746, 759, 776, 826
BtgI CCRYGG 2 cut(s) 313, 681
BtgZI GCGATG 2 cut(s) 457, 962
BtrI CACGTC 2 cut(s) 522, 598
BtsCI GGATG 3 cut(s) 515, 818, 883
Cac8I GCNNGC 3 cut(s) 195, 317, 432
CfoI GCGC 5 cut(s) 41, 347, 901, 973, 1022
Cfr10I RCCGGY 2 cut(s) 449, 796
Cfr42I CCGCGG 1 cut(s) 316
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 3 cut(s) 121, 617, 802
Csp6I GTAC 1 cut(s) 10
CviAII CATG 3 cut(s) 232, 238, 808
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 4 cut(s) 50, 250, 910, 1043
DinI GGCGCC 1 cut(s) 972
DpnI GATC 5 cut(s) 21, 48, 277, 326, 356
DpnII GATC 5 cut(s) 19, 46, 275, 324, 354
DriI GACNNNNNGTC 2 cut(s) 613, 1032
EaeI YGGCCR 1 cut(s) 744
Eam1105I GACNNNNNGTC 2 cut(s) 613, 1032
EciI GGCGGA 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 984
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 4 cut(s) 165, 778, 889, 986
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 7 cut(s) 214, 289, 459, 492, 749, 935, 1106
Eco53kI GAGCTC 1 cut(s) 984
Eco57I CTGAAG 1 cut(s) 738
Eco72I CACGTG 1 cut(s) 342
Eco88I CYCGRG 2 cut(s) 369, 377
EcoICRI GAGCTC 1 cut(s) 984
EcoO109I RGGNCCY 2 cut(s) 492, 775
EcoRII CCWGG 2 cut(s) 69, 350
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 4 cut(s) 165, 778, 889, 986
EgeI GGCGCC 1 cut(s) 972
EheI GGCGCC 1 cut(s) 972
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 2 cut(s) 90, 262
FaeI CATG 3 cut(s) 235, 241, 811
FaqI GGGAC 5 cut(s) 200, 472, 505, 630, 948
FatI CATG 3 cut(s) 231, 237, 807
FauI CCCGC 3 cut(s) 308, 343, 482
FblI GTMKAC 2 cut(s) 959, 1096
Fnu4HI GCNGC 7 cut(s) 313, 348, 413, 688, 915, 945, 1009
FokI GGATG 3 cut(s) 502, 805, 890
FriOI GRGCYC 4 cut(s) 165, 778, 889, 986
Fsp4HI GCNGC 7 cut(s) 313, 348, 413, 688, 915, 945, 1009
GlaI GCGC 5 cut(s) 40, 346, 900, 972, 1021
GluI GCNGC 7 cut(s) 313, 348, 413, 688, 915, 945, 1009
GsuI CTGGAG 1 cut(s) 973
HaeII RGCGCY 3 cut(s) 42, 902, 974
HaeIII GGCC 8 cut(s) 312, 446, 680, 729, 746, 759, 776, 826
HgaI GACGC 3 cut(s) 121, 617, 802
HhaI GCGC 5 cut(s) 41, 347, 901, 973, 1022
Hin1I GRCGYC 4 cut(s) 5, 609, 794, 971
Hin1II CATG 3 cut(s) 235, 241, 811
Hin6I GCGC 5 cut(s) 39, 345, 899, 971, 1020
HinP1I GCGC 5 cut(s) 39, 345, 899, 971, 1020
HincII GTYRAC 2 cut(s) 960, 1097
HindII GTYRAC 2 cut(s) 960, 1097
HinfI GANTC 3 cut(s) 170, 643, 1033
HphI GGTGA 2 cut(s) 534, 652
Hpy166II GTNNAC 3 cut(s) 595, 960, 1097
Hpy188I TCNGA 9 cut(s) 16, 46, 175, 209, 329, 391, 586, 786, 1038
Hpy188III TCNNGA 2 cut(s) 23, 499
Hpy8I GTNNAC 3 cut(s) 595, 960, 1097
HpyAV CCTTC 1 cut(s) 762
HpyCH4III ACNGT 5 cut(s) 101, 403, 463, 931, 1001
HpyCH4IV ACGT 4 cut(s) 5, 341, 521, 597
HpyCH4V TGCA 1 cut(s) 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 431, 1017, 1081
HpyF3I CTNAG 4 cut(s) 50, 250, 910, 1043
HpySE526I ACGT 4 cut(s) 5, 341, 521, 597
Hsp92I GRCGYC 4 cut(s) 5, 609, 794, 971
Hsp92II CATG 3 cut(s) 235, 241, 811
HspAI GCGC 5 cut(s) 39, 345, 899, 971, 1020
KasI GGCGCC 1 cut(s) 970
KflI GGGWCCC 1 cut(s) 492
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 5 cut(s) 19, 46, 275, 324, 354
LmnI GCTCC 6 cut(s) 160, 640, 815, 863, 892, 989
Lsp1109I GCAGC 3 cut(s) 334, 399, 1020
LweI GCATC 3 cut(s) 524, 827, 1029
MaeII ACGT 4 cut(s) 5, 341, 521, 597
MaeIII GTNAC 2 cut(s) 992, 1001
MalI GATC 5 cut(s) 21, 48, 277, 326, 356
MboI GATC 5 cut(s) 19, 46, 275, 324, 354
MboII GAAGA 2 cut(s) 270, 349
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 7 cut(s) 165, 249, 384, 778, 889, 929, 986
MluCI AATT 2 cut(s) 580, 1062
Mly113I GGCGCC 1 cut(s) 971
MlyI GAGTC 3 cut(s) 164, 652, 1042
MmeI TCCRAC 4 cut(s) 198, 414, 809, 1084
MseI TTAA 1 cut(s) 1088
MslI CAYNNNNRTG 3 cut(s) 209, 236, 242
MspA1I CMGCKG 5 cut(s) 315, 364, 852, 914, 1011
MspR9I CCNGG 7 cut(s) 71, 218, 352, 370, 371, 694, 823
MvaI CCWGG 2 cut(s) 71, 352
MvnI CGCG 2 cut(s) 315, 1022
MwoI GCNNNNNNNGC 4 cut(s) 344, 431, 1017, 1081
NarI GGCGCC 1 cut(s) 971
NciI CCSGG 5 cut(s) 218, 370, 371, 694, 823
NdeII GATC 5 cut(s) 19, 46, 275, 324, 354
NlaIII CATG 3 cut(s) 235, 241, 811
NmeAIII GCCGAG 2 cut(s) 451, 999
NmuCI GTSAC 1 cut(s) 992
PcsI WCGNNNNNNNCGW 4 cut(s) 423, 480, 603, 935
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 7 cut(s) 314, 349, 414, 689, 916, 946, 1010
PleI GAGTC 3 cut(s) 164, 651, 1041
PluTI GGCGCC 1 cut(s) 974
PmaCI CACGTG 1 cut(s) 342
PmlI CACGTG 1 cut(s) 342
PpsI GAGTC 3 cut(s) 164, 651, 1041
Ppu21I YACGTR 1 cut(s) 342
PpuMI RGGWCCY 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 69, 350
PspCI CACGTG 1 cut(s) 342
PspGI CCWGG 2 cut(s) 69, 350
PspOMI GGGCCC 1 cut(s) 774
PspPPI RGGWCCY 1 cut(s) 492
PsrI GAACNNNNNNTAC 2 cut(s) 864, 896
PsuI RGATCY 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 3 cut(s) 209, 236, 242
SacI GAGCTC 1 cut(s) 986
SacII CCGCGG 1 cut(s) 316
SalI GTCGAC 2 cut(s) 958, 1095
SaqAI TTAA 1 cut(s) 1088
SatI GCNGC 7 cut(s) 313, 348, 413, 688, 915, 945, 1009
Sau3AI GATC 5 cut(s) 19, 46, 275, 324, 354
SchI GAGTC 3 cut(s) 164, 652, 1042
ScrFI CCNGG 7 cut(s) 71, 218, 352, 370, 371, 694, 823
SduI GDGCHC 7 cut(s) 165, 249, 384, 778, 889, 929, 986
SetI ASST 9 cut(s) 8, 72, 344, 366, 524, 600, 664, 754, 986
SfaNI GCATC 3 cut(s) 524, 827, 1029
SfoI GGCGCC 1 cut(s) 972
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SgrDI CGTCGACG 1 cut(s) 958
SinI GGWCC 7 cut(s) 214, 289, 459, 492, 749, 935, 1106
SmaI CCCGGG 1 cut(s) 371
SmiMI CAYNNNNRTG 3 cut(s) 209, 236, 242
SmlI CTYRAG 2 cut(s) 152, 497
SmoI CTYRAG 2 cut(s) 152, 497
Sse9I AATT 2 cut(s) 580, 1062
SspDI GGCGCC 1 cut(s) 970
SstI GAGCTC 1 cut(s) 986
StyD4I CCNGG 7 cut(s) 69, 216, 350, 368, 369, 692, 821
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 5 cut(s) 101, 403, 463, 931, 1001
TaiI ACGT 4 cut(s) 8, 344, 524, 600
TaqI TCGA 9 cut(s) 110, 306, 417, 441, 528, 833, 905, 959, 1096
TaqII GACCGA 2 cut(s) 514, 952
TasI AATT 2 cut(s) 580, 1062
TauI GCSGC 4 cut(s) 315, 690, 917, 947
Tru1I TTAA 1 cut(s) 1088
Tru9I TTAA 1 cut(s) 1088
TseFI GTSAC 1 cut(s) 992
TseI GCWGC 3 cut(s) 347, 412, 1008
Tsp45I GTSAC 1 cut(s) 992
TspGWI ACGGA 6 cut(s) 48, 152, 232, 408, 472, 640
TspMI CCCGGG 1 cut(s) 369
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 7 cut(s) 214, 289, 459, 492, 749, 935, 1106
XapI RAATTY 1 cut(s) 1062
XmaI CCCGGG 1 cut(s) 369
XmiI GTMKAC 2 cut(s) 959, 1096
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.