Rroxscaffold_3G00256610
TCP Family

Transcription factor TCP9-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
50964503 .. 50966632
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256610.1

Sequence Viewer

Length: 1173 bp
ATGACGTCGTATTTTGAGGATCAAGAAGACGACGGAGGAGGAGGCGGTTCTGATCACAGCACCAGCACCGGCGACCCGGAGGAGAACCAGAACAGTGAGGACAACAGGAACCGAGTCTTTTCGAGGCAGCCGGCTAATTTTGACGAAACGGCGATGCAGCTGAAGATGGAGCCCATTGACTCGGACCCACCGTCGGACTCTGACCACCGGGCCCACCCGCAACCGCCGCAGGCTCCGTCCGTCGGAATGCTCCCCATGGAGGCGATGCAGATGCAAATGCCCGTGCCGGTGTCCTCCTCCTCCCCAGCCGCCGCCAGGCGCTCCTCCACCAAGGACCGCCACACGAAGGTCGAGGGCCGCGGCCGCAGGATCCGAATACCGGCCACGTGCGCGGCTCGGATCTTCCAGCTGACCCGGGAGCTGGGGCACAAGTCAGACGGCGAAACGGTGCGGTGGCTCCTCGAACACGCCGAGCAGGCCATAATCGAAGCCACCGGCACCGGCACTGTCCCGGCCATCGCTGTCTCCGTCGGTGGAACCCTCAAGATCCCCACCACGCCCAGCTACCACAACCCGACCGACGACTCGCAGACCTCCGCGGCCAAGAAGCGGAAGCGCCCCTCCAACAGCGAGTTCGTGGACCTAAGCGACGCCGTATCGCAGTCCTCGGGGCTTGCTCCGGTGGGGCCCTCGACTCCTCAGCCCGTCCCTCAAGGCCTGGTCCCCGTCTGGGCCGTGGGCAACGCCGGCATGATGGTCCCTGCCAACGCCTTCTGGATGATTCCACCAAACGGGTCGGGTCAGGTCGGCCCGGCCGCCGGCCCGTCCAGCCAAGCACCGCAAATTTGGGCCTTGTCCCCGACTATGACGCCGGTGTTCAACGTGGCCGCGGCCCGGCCCATATCGACGACGTTCGTGGCGAACGGCGGAGTGGAGGTTCGCGCTCCGTCGCCGGCTCTGTCGAACTCGGCGGTGAGCACGAGCACGGTGGGGTCGAAGGCGGCGAAGAAGTCGTCGTCGACAATGGCGCCGAGCGTGAGCTCCAGTGGTAGTGGTAACAGTAACAACGGTAGTGGCAGAAAAGCTCAGATGCTTAGGGATTTTACTCTAGAGATTTACGATAAGCAGGAGCTGCAGTTCATGGGTCGACCCGCAGGCCCAGGAAGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

40.91

Weight (kDa)

6.19

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 109 - 197 2e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016324)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 497, 1027
AccI GTMKAC 2 cut(s) 1019, 1147
AccII CGCG 5 cut(s) 360, 392, 599, 890, 942
AclWI GGATC 5 cut(s) 27, 364, 377, 407, 541
AcoI YGGCCR 6 cut(s) 361, 381, 513, 600, 813, 885
AcsI RAATTY 1 cut(s) 843
AcuI CTGAAG 1 cut(s) 182
AcvI CACGTG 1 cut(s) 387
AcyI GRCGYC 4 cut(s) 5, 651, 869, 1028
AgsI TTSAA 1 cut(s) 880
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 3 cut(s) 314, 717, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AloI GAACNNNNNNTCC 4 cut(s) 921, 953, 1121, 1153
AluBI AGCT 7 cut(s) 160, 409, 421, 564, 1041, 1085, 1132
AluI AGCT 7 cut(s) 160, 409, 421, 564, 1041, 1085, 1132
Alw21I GWGCWC 3 cut(s) 980, 986, 1043
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 5 cut(s) 27, 364, 377, 407, 541
AlwNI CAGNNNCTG 1 cut(s) 1132
Ama87I CYCGRG 2 cut(s) 414, 667
ApaI GGGCCC 2 cut(s) 214, 690
ApeKI GCWGC 3 cut(s) 127, 157, 1132
ApoI RAATTY 1 cut(s) 843
ArsI GACNNNNNNTTYG 2 cut(s) 998, 1030
AspLEI GCGC 5 cut(s) 321, 392, 618, 944, 1030
AsuC2I CCSGG 7 cut(s) 77, 209, 415, 416, 512, 812, 895
AsuHPI GGTGA 1 cut(s) 985
AvaI CYCGRG 2 cut(s) 414, 667
AvaII GGWCC 5 cut(s) 184, 334, 640, 721, 757
BaeGI GKGCMC 3 cut(s) 214, 429, 690
BamHI GGATCC 1 cut(s) 369
BanI GGYRCC 2 cut(s) 497, 1027
BanII GRGCYC 4 cut(s) 174, 214, 690, 1043
BauI CACGAG 1 cut(s) 979
BbrPI CACGTG 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 980, 986, 1043
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 139, 169, 1119
BccI CCATC 3 cut(s) 160, 524, 748
BceAI ACGGC 5 cut(s) 165, 454, 638, 719, 940
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 3 cut(s) 316, 719, 1161
BclI TGATCA 1 cut(s) 52
BcnI CCSGG 7 cut(s) 77, 209, 415, 416, 512, 812, 895
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 1 cut(s) 1109
BfmI CTRYAG 1 cut(s) 1133
BfoI RGCGCY 3 cut(s) 322, 619, 1031
BglI GCCNNNNNGGC 1 cut(s) 476
Bme18I GGWCC 5 cut(s) 184, 334, 640, 721, 757
BmeRI GACNNNNNGTC 1 cut(s) 190
BmeT110I CYCGRG 2 cut(s) 414, 667
BmsI GCATC 4 cut(s) 144, 255, 261, 1080
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 1027
Bpu10I CCTNAGC 3 cut(s) 644, 699, 1094
BpuEI CTTGAG 2 cut(s) 527, 696
BpuMI CCSGG 7 cut(s) 77, 209, 415, 416, 512, 812, 895
BsaAI YACGTR 1 cut(s) 387
BsaHI GRCGYC 4 cut(s) 5, 651, 869, 1028
BsaJI CCNNGG 9 cut(s) 255, 330, 358, 414, 597, 666, 735, 888, 1159
BsaWI WCCGGW 1 cut(s) 679
BsaXI ACNNNNNCTCC 4 cut(s) 921, 951, 1121, 1151
Bse1I ACTGG 2 cut(s) 1044, 1168
BseBI CCWGG 3 cut(s) 316, 719, 1161
BseDI CCNNGG 9 cut(s) 255, 330, 358, 414, 597, 666, 735, 888, 1159
BseGI GGATG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 713, 1100
BseNI ACTGG 2 cut(s) 1044, 1168
BseRI GAGGAG 8 cut(s) 51, 54, 95, 286, 289, 313, 449, 687
BseSI GKGCMC 3 cut(s) 214, 429, 690
BseX3I CGGCCG 2 cut(s) 361, 813
BseXI GCAGC 3 cut(s) 139, 169, 1119
BseYI CCCAGC 3 cut(s) 304, 421, 560
Bsh1236I CGCG 5 cut(s) 360, 392, 599, 890, 942
Bsh1285I CGRYCG 3 cut(s) 364, 579, 816
BshNI GGYRCC 2 cut(s) 497, 1027
BsiEI CGRYCG 3 cut(s) 364, 579, 816
BsiHKAI GWGCWC 3 cut(s) 980, 986, 1043
BsiHKCI CYCGRG 2 cut(s) 414, 667
BslFI GGGAC 5 cut(s) 494, 692, 707, 743, 841
BsmAI GTCTC 1 cut(s) 529
BsmFI GGGAC 5 cut(s) 494, 692, 707, 743, 841
BsmI GAATGC 1 cut(s) 252
BsoBI CYCGRG 2 cut(s) 414, 667
Bsp120I GGGCCC 2 cut(s) 210, 686
Bsp1286I GDGCHC 7 cut(s) 174, 214, 429, 690, 980, 986, 1043
Bsp143I GATC 5 cut(s) 19, 52, 369, 399, 546
Bsp19I CCATGG 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 712, 1099
BspFNI CGCG 5 cut(s) 360, 392, 599, 890, 942
BspMAI CTGCAG 1 cut(s) 1137
BspPI GGATC 5 cut(s) 27, 364, 377, 407, 541
BspT107I GGYRCC 2 cut(s) 497, 1027
BsrI ACTGG 2 cut(s) 1044, 1168
BssECI CCNNGG 9 cut(s) 255, 330, 358, 414, 597, 666, 735, 888, 1159
BssMI GATC 5 cut(s) 19, 52, 369, 399, 546
BssNI GRCGYC 4 cut(s) 5, 651, 869, 1028
BssSI CACGAG 1 cut(s) 979
BssT1I CCWWGG 2 cut(s) 255, 330
Bst2BI CACGAG 1 cut(s) 979
Bst2UI CCWGG 3 cut(s) 316, 719, 1161
Bst4CI ACNGT 7 cut(s) 95, 192, 448, 508, 988, 1061, 1070
BstACI GRCGYC 4 cut(s) 5, 651, 869, 1028
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstBAI YACGTR 1 cut(s) 387
BstC8I GCNNGC 8 cut(s) 132, 231, 477, 675, 748, 820, 954, 1156
BstDEI CTNAG 4 cut(s) 644, 699, 1086, 1094
BstDSI CCRYGG 5 cut(s) 255, 358, 597, 735, 888
BstF5I GGATG 1 cut(s) 783
BstFNI CGCG 5 cut(s) 360, 392, 599, 890, 942
BstH2I RGCGCY 3 cut(s) 322, 619, 1031
BstHHI GCGC 5 cut(s) 321, 392, 618, 944, 1030
BstKTI GATC 5 cut(s) 22, 55, 372, 402, 549
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 5 cut(s) 19, 52, 369, 399, 546
BstMCI CGRYCG 3 cut(s) 364, 579, 816
BstMWI GCNNNNNNNGC 8 cut(s) 226, 363, 389, 476, 747, 828, 1132, 1164
BstNI CCWGG 3 cut(s) 316, 719, 1161
BstSFI CTRYAG 1 cut(s) 1133
BstSLI GKGCMC 3 cut(s) 214, 429, 690
BstUI CGCG 5 cut(s) 360, 392, 599, 890, 942
BstV1I GCAGC 3 cut(s) 139, 169, 1119
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 3 cut(s) 369, 399, 546
BstYI RGATCY 3 cut(s) 369, 399, 546
BstZI CGGCCG 2 cut(s) 361, 813
BtgI CCRYGG 5 cut(s) 255, 358, 597, 735, 888
BtgZI GCGATG 3 cut(s) 167, 278, 502
BtsCI GGATG 1 cut(s) 783
BtsIMutI CAGTG 3 cut(s) 100, 504, 1051
Cac8I GCNNGC 8 cut(s) 132, 231, 477, 675, 748, 820, 954, 1156
CaiI CAGNNNCTG 1 cut(s) 1132
CciNI GCGGCCGC 1 cut(s) 361
CfoI GCGC 5 cut(s) 321, 392, 618, 944, 1030
Cfr42I CCGCGG 3 cut(s) 361, 600, 891
Cfr9I CCCGGG 1 cut(s) 414
CseI GACGC 2 cut(s) 659, 877
CspCI CAANNNNNGTGG 2 cut(s) 1054, 1089
CviAII CATG 3 cut(s) 256, 751, 1141
DdeI CTNAG 4 cut(s) 644, 699, 1086, 1094
DinI GGCGCC 1 cut(s) 1029
DpnI GATC 5 cut(s) 21, 54, 371, 401, 548
DpnII GATC 5 cut(s) 19, 52, 369, 399, 546
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 6 cut(s) 361, 381, 513, 600, 813, 885
EagI CGGCCG 2 cut(s) 361, 813
Eam1105I GACNNNNNGTC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 942
Ecl136II GAGCTC 1 cut(s) 1041
EclXI CGGCCG 2 cut(s) 361, 813
Eco130I CCWWGG 2 cut(s) 255, 330
Eco147I AGGCCT 1 cut(s) 717
Eco24I GRGCYC 4 cut(s) 174, 214, 690, 1043
Eco47I GGWCC 5 cut(s) 184, 334, 640, 721, 757
Eco52I CGGCCG 2 cut(s) 361, 813
Eco53kI GAGCTC 1 cut(s) 1041
Eco57I CTGAAG 1 cut(s) 182
Eco72I CACGTG 1 cut(s) 387
Eco88I CYCGRG 2 cut(s) 414, 667
EcoICRI GAGCTC 1 cut(s) 1041
EcoO109I RGGNCCY 2 cut(s) 686, 687
EcoRII CCWGG 3 cut(s) 314, 717, 1159
EcoT14I CCWWGG 2 cut(s) 255, 330
EcoT38I GRGCYC 4 cut(s) 174, 214, 690, 1043
EgeI GGCGCC 1 cut(s) 1029
EheI GGCGCC 1 cut(s) 1029
ErhI CCWWGG 2 cut(s) 255, 330
FaeI CATG 3 cut(s) 259, 754, 1144
FaiI YATR 6 cut(s) 257, 482, 752, 866, 902, 1142
FaqI GGGAC 5 cut(s) 494, 692, 707, 743, 841
FatI CATG 3 cut(s) 255, 750, 1140
FauI CCCGC 2 cut(s) 225, 1159
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 2 cut(s) 1019, 1147
FokI GGATG 1 cut(s) 790
FriOI GRGCYC 4 cut(s) 174, 214, 690, 1043
FspBI CTAG 1 cut(s) 1109
GlaI GCGC 5 cut(s) 320, 391, 617, 943, 1029
GsaI CCCAGC 3 cut(s) 308, 425, 564
GsuI CTGGAG 1 cut(s) 1027
HaeII RGCGCY 3 cut(s) 322, 619, 1031
HgaI GACGC 2 cut(s) 659, 877
HhaI GCGC 5 cut(s) 321, 392, 618, 944, 1030
Hin1I GRCGYC 4 cut(s) 5, 651, 869, 1028
Hin1II CATG 3 cut(s) 259, 754, 1144
Hin6I GCGC 5 cut(s) 319, 390, 616, 942, 1028
HinP1I GCGC 5 cut(s) 319, 390, 616, 942, 1028
HincII GTYRAC 2 cut(s) 1020, 1148
HindII GTYRAC 2 cut(s) 1020, 1148
HinfI GANTC 6 cut(s) 114, 179, 197, 584, 694, 781
HphI GGTGA 1 cut(s) 985
Hpy166II GTNNAC 3 cut(s) 640, 1020, 1148
Hpy188I TCNGA 9 cut(s) 52, 184, 196, 202, 245, 374, 399, 436, 1089
Hpy188III TCNNGA 4 cut(s) 23, 544, 775, 1109
Hpy8I GTNNAC 3 cut(s) 640, 1020, 1148
HpyAV CCTTC 3 cut(s) 340, 781, 991
HpyCH4III ACNGT 7 cut(s) 95, 192, 448, 508, 988, 1061, 1070
HpyCH4IV ACGT 4 cut(s) 5, 386, 882, 911
HpyCH4V TGCA 4 cut(s) 157, 268, 274, 1135
HpyF10VI GCNNNNNNNGC 8 cut(s) 226, 363, 389, 476, 747, 828, 1132, 1164
HpyF3I CTNAG 4 cut(s) 644, 699, 1086, 1094
HpySE526I ACGT 4 cut(s) 5, 386, 882, 911
Hsp92I GRCGYC 4 cut(s) 5, 651, 869, 1028
Hsp92II CATG 3 cut(s) 259, 754, 1144
HspAI GCGC 5 cut(s) 319, 390, 616, 942, 1028
KasI GGCGCC 1 cut(s) 1027
KroI GCCGGC 4 cut(s) 130, 746, 818, 952
KroNI GCCGGC 4 cut(s) 132, 748, 820, 954
Ksp22I TGATCA 1 cut(s) 52
KspI CCGCGG 3 cut(s) 361, 600, 891
Kzo9I GATC 5 cut(s) 19, 52, 369, 399, 546
Lsp1109I GCAGC 3 cut(s) 139, 169, 1119
LweI GCATC 4 cut(s) 144, 255, 261, 1080
MaeI CTAG 1 cut(s) 1109
MaeII ACGT 4 cut(s) 5, 386, 882, 911
MaeIII GTNAC 2 cut(s) 1055, 1061
MalI GATC 5 cut(s) 21, 54, 371, 401, 548
MboI GATC 5 cut(s) 19, 52, 369, 399, 546
MboII GAAGA 4 cut(s) 38, 175, 394, 1018
MflI RGATCY 3 cut(s) 369, 399, 546
MhlI GDGCHC 7 cut(s) 174, 214, 429, 690, 980, 986, 1043
MluCI AATT 2 cut(s) 136, 843
Mly113I GGCGCC 1 cut(s) 1028
MlyI GAGTC 5 cut(s) 123, 173, 191, 578, 688
MmeI TCCRAC 3 cut(s) 174, 223, 648
MroNI GCCGGC 4 cut(s) 130, 746, 818, 952
MspA1I CMGCKG 5 cut(s) 160, 360, 409, 599, 890
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 3 cut(s) 316, 719, 1161
MvnI CGCG 5 cut(s) 360, 392, 599, 890, 942
MwoI GCNNNNNNNGC 8 cut(s) 226, 363, 389, 476, 747, 828, 1132, 1164
NaeI GCCGGC 4 cut(s) 132, 748, 820, 954
NarI GGCGCC 1 cut(s) 1028
NciI CCSGG 7 cut(s) 77, 209, 415, 416, 512, 812, 895
NcoI CCATGG 1 cut(s) 255
NdeII GATC 5 cut(s) 19, 52, 369, 399, 546
NgoMIV GCCGGC 4 cut(s) 130, 746, 818, 952
NlaIII CATG 3 cut(s) 259, 754, 1144
NmeAIII GCCGAG 3 cut(s) 496, 947, 1056
NotI GCGGCCGC 1 cut(s) 361
PceI AGGCCT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 6 cut(s) 188, 468, 525, 917, 992, 1001
PctI GAATGC 1 cut(s) 252
PdiI GCCGGC 4 cut(s) 132, 748, 820, 954
PfeI GAWTC 1 cut(s) 781
PleI GAGTC 5 cut(s) 122, 173, 191, 578, 688
PluTI GGCGCC 1 cut(s) 1031
PmaCI CACGTG 1 cut(s) 387
PmlI CACGTG 1 cut(s) 387
PpsI GAGTC 5 cut(s) 122, 173, 191, 578, 688
Ppu21I YACGTR 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 1043
Psp6I CCWGG 3 cut(s) 314, 717, 1159
PspCI CACGTG 1 cut(s) 387
PspFI CCCAGC 3 cut(s) 304, 421, 560
PspGI CCWGG 3 cut(s) 314, 717, 1159
PspOMI GGGCCC 2 cut(s) 210, 686
PstI CTGCAG 1 cut(s) 1137
PstNI CAGNNNCTG 1 cut(s) 1132
PsuI RGATCY 3 cut(s) 369, 399, 546
PvuII CAGCTG 2 cut(s) 160, 409
SacI GAGCTC 1 cut(s) 1043
SacII CCGCGG 3 cut(s) 361, 600, 891
SalI GTCGAC 2 cut(s) 1018, 1146
Sau3AI GATC 5 cut(s) 19, 52, 369, 399, 546
SchI GAGTC 5 cut(s) 123, 173, 191, 578, 688
SduI GDGCHC 7 cut(s) 174, 214, 429, 690, 980, 986, 1043
SfaNI GCATC 4 cut(s) 144, 255, 261, 1080
SfcI CTRYAG 1 cut(s) 1133
SfoI GGCGCC 1 cut(s) 1029
Sfr303I CCGCGG 3 cut(s) 361, 600, 891
SgrAI CRCCGGYG 2 cut(s) 68, 871
SgrBI CCGCGG 3 cut(s) 361, 600, 891
SinI GGWCC 5 cut(s) 184, 334, 640, 721, 757
SmaI CCCGGG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 542, 711
SmoI CTYRAG 2 cut(s) 542, 711
Sse9I AATT 2 cut(s) 136, 843
SseBI AGGCCT 1 cut(s) 717
SspDI GGCGCC 1 cut(s) 1027
SspMI CTAG 1 cut(s) 1109
SstI GAGCTC 1 cut(s) 1043
StuI AGGCCT 1 cut(s) 717
StyI CCWWGG 2 cut(s) 255, 330
TaaI ACNGT 7 cut(s) 95, 192, 448, 508, 988, 1061, 1070
TaiI ACGT 4 cut(s) 8, 389, 885, 914
TaqII GACCGA 1 cut(s) 593
TasI AATT 2 cut(s) 136, 843
TfiI GAWTC 1 cut(s) 781
TscAI CASTG 3 cut(s) 100, 511, 1051
TseI GCWGC 3 cut(s) 127, 157, 1132
TspDTI ATGAA 1 cut(s) 1129
TspGWI ACGGA 5 cut(s) 48, 225, 229, 517, 936
TspMI CCCGGG 1 cut(s) 414
TspRI CASTG 3 cut(s) 100, 511, 1051
VpaK11BI GGWCC 5 cut(s) 184, 334, 640, 721, 757
XapI RAATTY 1 cut(s) 843
XbaI TCTAGA 1 cut(s) 1108
XmaI CCCGGG 1 cut(s) 414
XmiI GTMKAC 2 cut(s) 1019, 1147
XspI CTAG 1 cut(s) 1109
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.