Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007404

Physical Location & Seq

Genomic Coordinates Reverse (-)

20527585 .. 20529421

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1083700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTTAAATCACAAAATAGAAGCTTCAAGGAACTCTTAAGCAATAAGGATACGGAGGAAAGTGTTTCAATTTTGGTGGCTGGGATGAGGGCATTAATACAACCACCCAAGTTGCTGAGCTCAACCGCAGAGCATCGATCTGATATTACATTGTCAAGTTCCGACCGTGGCTCTGGACTTGATACTCTGCGAGAATTTGGATCTAGAGTTCCTTCTAACTTTCTATCATCTTCGGGTCACTCCTCAGTACAACATCATCCTGCTGTTTATACCCGAACATCAACTTATGACGACAATCAGCAGTCACAATGGGCATGGTCTGCAGGTTCAGTACATGAAGTAAGTACTGATGGTTCAACAAAGAGTTCTCGGAATACCATTACAAGAGAATGGTCTCAACAGTCTTCAGATGACGACATTGAAAAGCTAAAGGCTGAGCTTTTTGTTCTATCCAGACAGGTAGATATGTCAGAGCTAGAATTACAAACATTAAGGAGGCAGATGGTAAAGGAGAGCAAAAGGGGGCAGGATCTTTCAAGAGAAGCCATCAACTTGAAAGAGGAACGCGATTCTTCCAAGGCGGAAGTTGAGAAACTAAAGTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

NT-C2

Protein Analysis

203

Amino Acids

22.76

Weight (kDa)

6.23

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63300 AT5G41140 AT5G41140
fragaria_vesca	FvH4_5g02001 FvH4_5g02001 FvH4_5g02001 FvH4_5g02001 FvH4_5g02001 FvH4_5g02001
malus_domestica	MD06G1078600.v1.1 MD06G1083700.v1.1 MD14G1099400.v1.1
prunus_persica	Prupe.5G096300_v2.0.a1
pyrus_communis	pycom06g07600 pycom14g09740
rosa_chinensis	RchiOBHm_Chr7g0198351
rosa_laevigata	RLG00000003873
rosa_multiflora	Rmu_sc0001250.1_g000023
rosa_roxburghii	Rroxscaffold_3G00257810
rosa_rugosa	Rorug07G0047300
rosa_samantha	Rh7AG170700 Rh7BG173800 Rh7CG180600 Rh7DG173000
rosa_wichuraiana	Rw7G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccII	CGCG	1 cut(s)	567
AciI	CCGC	2 cut(s)	126, 581
AclWI	GGATC	2 cut(s)	208, 537
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	3 cut(s)	249, 333, 346
AflII	CTTAAG	1 cut(s)	37
AgsI	TTSAA	6 cut(s)	28, 69, 357, 422, 537, 556
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	5 cut(s)	24, 120, 427, 439, 475
AluI	AGCT	5 cut(s)	24, 120, 427, 439, 475
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	208, 537
ApoI	RAATTY	1 cut(s)	194
AseI	ATTAAT	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	122
BccI	CCATC	3 cut(s)	344, 496, 554
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	2 cut(s)	204, 476
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	43
BlpI	GCTNAGC	2 cut(s)	116, 435
BmcAI	AGTACT	1 cut(s)	346
BmsI	GCATC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	396
Bpu1102I	GCTNAGC	2 cut(s)	116, 435
Bsa29I	ATCGAT	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	166, 576
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	166, 576
BseGI	GGATG	2 cut(s)	90, 256
BseMII	CTCAG	3 cut(s)	107, 258, 426
BseRI	GAGGAG	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	567
Bsh1285I	CGRYCG	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	399
Bso31I	GGTCTC	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	137, 200, 529
Bsp1720I	GCTNAGC	2 cut(s)	116, 435
BspACI	CCGC	2 cut(s)	126, 581
BspCNI	CTCAG	3 cut(s)	108, 257, 427
BspDI	ATCGAT	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	567
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	208, 537
BspTI	CTTAAG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	166, 576
BssMI	GATC	3 cut(s)	137, 200, 529
BssT1I	CCWWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	167, 402
BstAFI	CTTAAG	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	116, 244, 435
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	90, 256
BstFNI	CGCG	1 cut(s)	567
BstKTI	GATC	3 cut(s)	140, 203, 532
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	3 cut(s)	137, 200, 529
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	567
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	200, 529
BstYI	RGATCY	2 cut(s)	200, 529
Bsu15I	ATCGAT	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	43
BsuTUI	ATCGAT	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	90, 256
BveI	ACCTGC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	248, 332, 345
CspCI	CAANNNNNGTGG	4 cut(s)	57, 92, 93, 128
CviAII	CATG	2 cut(s)	315, 335
CviJI	RGCY	9 cut(s)	24, 80, 120, 171, 427, 434, 439, 475, 545
CviKI_1	RGCY	9 cut(s)	24, 80, 120, 171, 427, 434, 439, 475, 545
CviQI	GTAC	3 cut(s)	248, 332, 345
DdeI	CTNAG	3 cut(s)	116, 244, 435
DpnI	GATC	3 cut(s)	139, 202, 531
DpnII	GATC	3 cut(s)	137, 200, 529
DraI	TTTAAA	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	596
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	2 cut(s)	318, 338
FaiI	YATR	5 cut(s)	270, 288, 316, 336, 467
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	2 cut(s)	314, 334
FokI	GGATG	2 cut(s)	97, 243
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	2 cut(s)	204, 476
GsaI	CCCAGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	318, 338
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	1 cut(s)	569
Hpy188I	TCNGA	5 cut(s)	142, 163, 372, 409, 472
Hpy188III	TCNNGA	4 cut(s)	174, 204, 453, 537
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	2 cut(s)	167, 402
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	116, 244, 435
Hsp92II	CATG	2 cut(s)	318, 338
Kzo9I	GATC	3 cut(s)	137, 200, 529
LpnPI	CCDG	7 cut(s)	66, 159, 273, 309, 443, 466, 512
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	204, 476
MaeIII	GTNAC	2 cut(s)	236, 303
MalI	GATC	3 cut(s)	139, 202, 531
MboI	GATC	3 cut(s)	137, 200, 529
MboII	GAAGA	3 cut(s)	222, 396, 564
MflI	RGATCY	2 cut(s)	200, 529
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	69, 194, 479
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	49, 81, 253, 489, 553
MseI	TTAA	4 cut(s)	6, 38, 95, 491
MspCI	CTTAAG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	3 cut(s)	137, 200, 529
NlaIII	CATG	2 cut(s)	318, 338
NmuCI	GTSAC	2 cut(s)	236, 303
PfeI	GAWTC	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	80
PsrI	GAACNNNNNNTAC	2 cut(s)	337, 369
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	200, 529
RsaI	GTAC	3 cut(s)	249, 333, 346
RsaNI	GTAC	3 cut(s)	248, 332, 345
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	4 cut(s)	6, 38, 95, 491
Sau3AI	GATC	3 cut(s)	137, 200, 529
ScaI	AGTACT	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	7 cut(s)	26, 122, 328, 429, 441, 462, 477
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	3 cut(s)	69, 194, 479
SsiI	CCGC	2 cut(s)	126, 581
SspMI	CTAG	2 cut(s)	204, 476
SstI	GAGCTC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	167, 402
TaqI	TCGA	1 cut(s)	136
TasI	AATT	3 cut(s)	69, 194, 479
TatI	WGTACW	3 cut(s)	247, 331, 344
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	4 cut(s)	6, 38, 95, 491
Tru9I	TTAA	4 cut(s)	6, 38, 95, 491
TseFI	GTSAC	2 cut(s)	236, 303
Tsp45I	GTSAC	2 cut(s)	236, 303
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	68
Vha464I	CTTAAG	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	95
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	203
XspI	CTAG	2 cut(s)	204, 476
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.