Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007404

Physical Location & Seq

Genomic Coordinates Forward (+)

3442712 .. 3443430

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0047300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCAGGCGACAACACCTTGTTTTTGCCAGGGATGGACCATGGTGGGATAGCAACTCAGGTTGTTGTGGAGAAGAAGCTCATGTCCGAAACGGGGAAAACAAGGCATGATCTTGGTAGAGAAGAGTTCCTGAAACAAGTATGGAAGTGGAAAGAGGACCATGAGGGCACCATTTTGCAGCAGCTGGGAGCTTCTCTCGACTTTTCGAGACAGTGCTTTACAATGGATGAGAAGTGCTCAAAGGCTGTGAGTTTGGTGGTGAGATACTTGTGGCCCACTACTAGAGTGGAAACAATGCTTGGTGATACCGGCATTGCTGTGCATCCTGATGACAAAAGATATGAGCATCTTCATGGAAAACATGCCATTCATCCATTTAATGGAAGGAGGATTCCTATAGTGTGTGATGCAGAGCTAGTTGATCCGGAGTTTGGGACTGGTGCAGTGAAGATCACCCCGGCGCATGACCCTAATGACTTTGAAGTAGGCAAGCGTCATGGTCTTGAGTTCATCAACATCCTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

NT-C2

Protein Analysis

175

Amino Acids

19.77

Weight (kDa)

6.1

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	1 - 88	3.3e-22	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1_2	PF13603	118 - 173	1.1e-08	Leucyl-tRNA synthetase, editing domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63300 AT5G41140 AT5G41140
fragaria_vesca	FvH4_5g02001 FvH4_5g02001 FvH4_5g02001 FvH4_5g02001 FvH4_5g02001 FvH4_5g02001
malus_domestica	MD06G1078600.v1.1 MD06G1083700.v1.1 MD14G1099400.v1.1
prunus_persica	Prupe.5G096300_v2.0.a1
pyrus_communis	pycom06g07600 pycom14g09740
rosa_chinensis	RchiOBHm_Chr7g0198351
rosa_laevigata	RLG00000003873
rosa_multiflora	Rmu_sc0001250.1_g000023
rosa_roxburghii	Rroxscaffold_3G00257810
rosa_rugosa	Rorug07G0047300
rosa_samantha	Rh7AG170700 Rh7BG173800 Rh7CG180600 Rh7DG173000
rosa_wichuraiana	Rw7G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	424
AclWI	GGATC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	93, 380, 431
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	4 cut(s)	79, 184, 191, 415
AluI	AGCT	4 cut(s)	79, 184, 191, 415
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	178, 181
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	3 cut(s)	37, 157, 273
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	271, 314, 445
AvaII	GGWCC	2 cut(s)	37, 157
BaeGI	GKGCMC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	190, 193
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	282, 416
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	2 cut(s)	179, 182
BlsI	GCNGC	2 cut(s)	180, 183
Bme1390I	CCNGG	2 cut(s)	30, 458
Bme18I	GGWCC	2 cut(s)	37, 157
BmgT120I	GGNCC	3 cut(s)	37, 157, 273
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	30, 458
BmsI	GCATC	3 cut(s)	331, 355, 397
BplI	GAGNNNNNCTC	4 cut(s)	180, 212, 221, 253
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	29, 40, 456
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 380, 431
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	29, 40, 456
BseGI	GGATG	5 cut(s)	39, 232, 322, 370, 516
BseLI	CCNNNNNNNGG	3 cut(s)	93, 380, 431
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	442
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	190, 193
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	309, 425, 458
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	3 cut(s)	93, 380, 431
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	170, 239
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	109, 421, 450
Bsp19I	CCATGG	1 cut(s)	40
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	442
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	29, 40, 456
BssMI	GATC	3 cut(s)	109, 421, 450
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	5 cut(s)	39, 232, 322, 370, 516
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	3 cut(s)	112, 424, 453
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	109, 421, 450
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	28, 456
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	190, 193
BsuRI	GGCC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	5 cut(s)	39, 232, 322, 370, 516
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	3 cut(s)	218, 450, 523
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	37, 157, 273
CseI	GACGC	1 cut(s)	482
CviAII	CATG	8 cut(s)	41, 82, 107, 161, 353, 362, 464, 497
CviJI	RGCY	6 cut(s)	79, 184, 191, 245, 274, 415
CviKI_1	RGCY	6 cut(s)	79, 184, 191, 245, 274, 415
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	3 cut(s)	111, 423, 452
DpnII	GATC	3 cut(s)	109, 421, 450
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	37, 157
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	8 cut(s)	44, 85, 110, 164, 356, 365, 467, 500
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	8 cut(s)	40, 81, 106, 160, 352, 361, 463, 496
Fnu4HI	GCNGC	2 cut(s)	179, 182
FokI	GGATG	5 cut(s)	46, 239, 309, 357, 503
Fsp4HI	GCNGC	2 cut(s)	179, 182
FspBI	CTAG	2 cut(s)	282, 416
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	2 cut(s)	179, 182
GsaI	CCCAGC	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	3 cut(s)	309, 425, 458
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	8 cut(s)	44, 85, 110, 164, 356, 365, 467, 500
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	3 cut(s)	309, 425, 458
HphI	GGTGA	3 cut(s)	271, 314, 445
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	6 cut(s)	130, 197, 207, 326, 425, 503
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	178, 322, 410, 443
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	8 cut(s)	44, 85, 110, 164, 356, 365, 467, 500
HspAI	GCGC	1 cut(s)	461
Kpn2I	TCCGGA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	109, 421, 450
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	2 cut(s)	190, 193
LweI	GCATC	3 cut(s)	331, 355, 397
MaeI	CTAG	2 cut(s)	282, 416
MalI	GATC	3 cut(s)	111, 423, 452
MboI	GATC	3 cut(s)	109, 421, 450
MboII	GAAGA	4 cut(s)	85, 134, 341, 460
MhlI	GDGCHC	2 cut(s)	170, 239
MnlI	CCTC	3 cut(s)	148, 157, 381
MroI	TCCGGA	1 cut(s)	424
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	3 cut(s)	317, 327, 351
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	3 cut(s)	309, 425, 458
MspR9I	CCNGG	2 cut(s)	30, 458
MvaI	CCWGG	1 cut(s)	30
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	109, 421, 450
NlaIII	CATG	8 cut(s)	44, 85, 110, 164, 356, 365, 467, 500
NlaIV	GGNNCC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	180, 183
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	3 cut(s)	37, 157, 273
PstNI	CAGNNNCTG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	184
RseI	CAYNNNNRTG	3 cut(s)	317, 327, 351
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	179, 182
Sau3AI	GATC	3 cut(s)	109, 421, 450
Sau96I	GGNCC	3 cut(s)	37, 157, 273
ScrFI	CCNGG	2 cut(s)	30, 458
SduI	GDGCHC	2 cut(s)	170, 239
SetI	ASST	6 cut(s)	20, 63, 81, 186, 193, 417
SfaNI	GCATC	3 cut(s)	331, 355, 397
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	37, 157
SmiMI	CAYNNNNRTG	3 cut(s)	317, 327, 351
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SspMI	CTAG	2 cut(s)	282, 416
StyD4I	CCNGG	2 cut(s)	28, 456
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	198, 206
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	2 cut(s)	218, 450
TseI	GCWGC	2 cut(s)	178, 181
TspDTI	ATGAA	3 cut(s)	341, 359, 499
TspRI	CASTG	2 cut(s)	218, 450
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	37, 157
XceI	RCATGY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	282, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.