MD06G1093300.v1.1

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0018035
Physical Location & Seq
Forward (+)
22425810 .. 22426385
576 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1093300.v1.1.491

Sequence Viewer

Length: 576 bp
ATGTTGGAGTCTGAAAGGTTCAAGAAAATTCAGCAGAACAGGAAGTGTTTTGCCTACATCGCTATCTTTGTTGTGTTCCAAATCATAGTCCTGGCCATATTCGGAGCAACGGTGATGAAAATTAAAACTCCGAATGTGAGGCTGAGATCGGTGACGGTCCAAAGCCTAGACTATAGTTCTTCAGGTAGCAATTCACCATTCTTCAACATGACTTTGATTGCTGAAGTTTCTGTGAGGAACAAGAATTTCGGGCAGTTCAAATTTGATCCGACAAAAGCTAATGTCACATTTGGGGGCGTCATAGTGGGGCAAGGTGATCTAATCAAAGCAAGAGCCAAGGCTAGGAAGACGAGGAGAATGAACGTGACGATTGAAGTGAGCTCTGATGGCATATCGGACGGTGCTAAGCTTGGGACTGAGGTGAGCTCAGGGAATGTGACATTAAGCACTCTTGCTAGGGTTAGAGGTAAGGTAACATTGATGAAATTGATGAAGAAGCGCAAAACAGCACAGATGAACTGCACAATGATTGTCAATTTACCGAACCAGCTTGTTTATGATTTGGCTTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

192

Amino Acids

21.15

Weight (kDa)

10.38

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 76 - 175 9.2e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018035)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03330
malus_domestica MD06G1093300.v1.1 MD14G1114000.v1.1
rosa_chinensis RchiOBHm_Chr7g0196451
rosa_laevigata RLG00000004014
rosa_multiflora Rmu_co8342145.1_g000001
rosa_roxburghii Rroxscaffold_3G00259310
rosa_rugosa Rorug07G0033500
rosa_samantha Rh7CG166100 Rh7DG159100
rosa_wichuraiana Rw7G013790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 3 cut(s) 27, 244, 260
AcuI CTGAAG 2 cut(s) 165, 243
AcyI GRCGYC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 4 cut(s) 22, 205, 259, 374
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 5 cut(s) 278, 381, 409, 426, 550
AluI AGCT 5 cut(s) 278, 381, 409, 426, 550
Alw21I GWGCWC 2 cut(s) 383, 428
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 3 cut(s) 27, 244, 260
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 5 cut(s) 124, 163, 186, 326, 433
AvaII GGWCC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 95
BanII GRGCYC 2 cut(s) 383, 428
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 383, 428
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 3 cut(s) 167, 342, 456
BfmI CTRYAG 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 405
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 410, 442
Bpu10I CCTNAGC 1 cut(s) 427
Bpu1102I GCTNAGC 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 3 cut(s) 134, 408, 441
BseRI GAGGAG 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 505
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 383, 428
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 383, 428
Bsp143I GATC 3 cut(s) 146, 265, 316
Bsp1720I GCTNAGC 1 cut(s) 405
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 3 cut(s) 135, 409, 440
BspPI GGATC 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 3 cut(s) 146, 265, 316
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 3 cut(s) 112, 157, 401
BstACI GRCGYC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 143, 405, 417, 427
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 3 cut(s) 149, 268, 319
BstMBI GATC 3 cut(s) 146, 265, 316
BstMWI GCNNNNNNNGC 2 cut(s) 59, 387
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 353
BsuRI GGCC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 43
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 286
CviAII CATG 1 cut(s) 208
DdeI CTNAG 4 cut(s) 143, 405, 417, 427
DpnI GATC 3 cut(s) 148, 267, 318
DpnII GATC 3 cut(s) 146, 265, 316
EaeI YGGCCR 1 cut(s) 93
Ecl136II GAGCTC 2 cut(s) 381, 426
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 2 cut(s) 383, 428
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 2 cut(s) 381, 426
Eco57I CTGAAG 2 cut(s) 165, 243
EcoICRI GAGCTC 2 cut(s) 381, 426
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 2 cut(s) 383, 428
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 211
FaiI YATR 7 cut(s) 86, 98, 174, 209, 302, 392, 558
FaqI GGGAC 1 cut(s) 427
FatI CATG 1 cut(s) 207
FriOI GRGCYC 2 cut(s) 383, 428
FspBI CTAG 3 cut(s) 167, 342, 456
GlaI GCGC 1 cut(s) 500
HaeIII GGCC 1 cut(s) 95
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 501
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 1 cut(s) 8
HphI GGTGA 5 cut(s) 124, 163, 186, 326, 433
Hpy188I TCNGA 6 cut(s) 13, 104, 132, 270, 385, 397
Hpy188III TCNNGA 1 cut(s) 22
HpyCH4III ACNGT 3 cut(s) 112, 157, 401
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 522
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 387
HpyF3I CTNAG 4 cut(s) 143, 405, 417, 427
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 1 cut(s) 499
Kzo9I GATC 3 cut(s) 146, 265, 316
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 25, 77, 104, 168, 414, 560
MaeI CTAG 3 cut(s) 167, 342, 456
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 5 cut(s) 151, 283, 364, 436, 472
MalI GATC 3 cut(s) 148, 267, 318
MboI GATC 3 cut(s) 146, 265, 316
MboII GAAGA 4 cut(s) 171, 193, 358, 505
MhlI GDGCHC 2 cut(s) 383, 428
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 7 cut(s) 27, 120, 190, 244, 260, 485, 535
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 5 cut(s) 132, 228, 345, 412, 458
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 2 cut(s) 123, 443
Msp20I TGGCCA 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 59, 387
NdeII GATC 3 cut(s) 146, 265, 316
NlaIII CATG 1 cut(s) 211
NmuCI GTSAC 4 cut(s) 151, 283, 364, 436
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp124BI GAGCTC 2 cut(s) 383, 428
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspPI GGNCC 1 cut(s) 157
SacI GAGCTC 2 cut(s) 383, 428
SaqAI TTAA 2 cut(s) 123, 443
Sau3AI GATC 3 cut(s) 146, 265, 316
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 2 cut(s) 383, 428
SfcI CTRYAG 1 cut(s) 172
SinI GGWCC 1 cut(s) 157
Sse9I AATT 7 cut(s) 27, 120, 190, 244, 260, 485, 535
SspMI CTAG 3 cut(s) 167, 342, 456
SstI GAGCTC 2 cut(s) 383, 428
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 112, 157, 401
TaiI ACGT 1 cut(s) 366
TasI AATT 7 cut(s) 27, 120, 190, 244, 260, 485, 535
Tru1I TTAA 2 cut(s) 123, 443
Tru9I TTAA 2 cut(s) 123, 443
TseFI GTSAC 4 cut(s) 151, 283, 364, 436
Tsp45I GTSAC 4 cut(s) 151, 283, 364, 436
TspDTI ATGAA 5 cut(s) 131, 374, 497, 506, 530
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 3 cut(s) 27, 244, 260
XspI CTAG 3 cut(s) 167, 342, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.