RchiOBHm_Chr7g0196451

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018035
Physical Location & Seq
Reverse (-)
14428323 .. 14429294
972 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17572

Sequence Viewer

Length: 561 bp
ATGTTGGAATCAGAGAGGTTCAAGAAAATCCAGAAGAACAGGAAATGCTTTGCATACATTGGAATCTTCATTGTGTTCCAAATCATAGTCATGACCGTTTTCGGATTGACCGTGATGAAGATCAAAACCCCGAGCGTGAGGCTGAGGTCCGTGACTGTCCAAACCCTCGAAAGCACCTCCAATACTTCCTTCACCGCAACTCTCATTGCTGAAGTTACCGTGAAGAACAAGAATTTCGGGAGCTACAGGTTCGATGCCACTAAGGCTAATGTGACCTACGGGGATGTCACGCTGGGAAGTGGTGACATTATCAAGTCACGCGCCGGTTTGAAGAAGACGAAGAGATTGAATGTGACCATTGACGTAAACTCGAGTGGGGTGTCGGATAACAGCCTTGCCACTGAGCTGACTTCAGGGAATGTGACACTGACGGCTCTTTCGAGGGTGACTGGTAAGGTGTCATTGATGGGGATGATGAAGAAGAGGAAGACCGCGAATATGAACTGCTCGATGATTGTTAATGTTCCAAACAAGGTTGTTTACGATTTGACTTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

186

Amino Acids

20.44

Weight (kDa)

10.12

Isoelectric Point (pI)

16.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018035)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03330
malus_domestica MD06G1093300.v1.1 MD14G1114000.v1.1
rosa_chinensis RchiOBHm_Chr7g0196451
rosa_laevigata RLG00000004014
rosa_multiflora Rmu_co8342145.1_g000001
rosa_roxburghii Rroxscaffold_3G00259310
rosa_rugosa Rorug07G0033500
rosa_samantha Rh7CG166100 Rh7DG159100
rosa_wichuraiana Rw7G013790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 321, 494
AciI CCGC 2 cut(s) 195, 492
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 231, 396
AgsI TTSAA 3 cut(s) 22, 331, 349
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 243, 406
AluI AGCT 2 cut(s) 243, 406
Ama87I CYCGRG 2 cut(s) 130, 370
ApoI RAATTY 1 cut(s) 232
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 184, 314, 457
AvaI CYCGRG 2 cut(s) 130, 370
AvaII GGWCC 1 cut(s) 147
BbsI GAAGAC 2 cut(s) 341, 494
BbvCI CCTCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 460
BceAI ACGGC 1 cut(s) 447
BfmI CTRYAG 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 2 cut(s) 130, 370
BmgT120I GGNCC 1 cut(s) 147
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 2 cut(s) 341, 494
Bpu10I CCTNAGC 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 119
BseGI GGATG 2 cut(s) 289, 477
BseJI GATNNNNATC 1 cut(s) 119
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 134, 393
BseNI ACTGG 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 292
Bsh1236I CGCG 2 cut(s) 321, 494
BsiHKCI CYCGRG 2 cut(s) 130, 370
BsiSI CCGG 1 cut(s) 324
BsoBI CYCGRG 2 cut(s) 130, 370
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 2 cut(s) 195, 492
BspCNI CTCAG 2 cut(s) 135, 394
BspFNI CGCG 2 cut(s) 321, 494
BspHI TCATGA 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 323
BssMI GATC 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 97, 112, 157, 220
Bst6I CTCTTC 2 cut(s) 335, 476
BstDEI CTNAG 3 cut(s) 143, 261, 402
BstF5I GGATG 2 cut(s) 289, 477
BstFNI CGCG 2 cut(s) 321, 494
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 2 cut(s) 321, 494
BstV2I GAAGAC 2 cut(s) 341, 494
BtsCI GGATG 2 cut(s) 289, 477
BtsIMutI CAGTG 2 cut(s) 399, 425
CciI TCATGA 1 cut(s) 90
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 142, 243, 266, 393, 406, 434
CviKI_1 RGCY 6 cut(s) 142, 243, 266, 393, 406, 434
DdeI CTNAG 3 cut(s) 143, 261, 402
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 335, 476
EarI CTCTTC 2 cut(s) 335, 476
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 231, 396
Eco88I CYCGRG 2 cut(s) 130, 370
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 55, 86, 92, 500
FatI CATG 1 cut(s) 90
FokI GGATG 2 cut(s) 296, 484
GlaI GCGC 1 cut(s) 322
GsaI CCCAGC 1 cut(s) 296
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 323
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 2 cut(s) 8, 63
HpaII CCGG 1 cut(s) 324
HphI GGTGA 3 cut(s) 184, 314, 457
Hpy166II GTNNAC 2 cut(s) 367, 541
Hpy188I TCNGA 3 cut(s) 13, 104, 385
Hpy188III TCNNGA 4 cut(s) 22, 31, 91, 238
Hpy8I GTNNAC 2 cut(s) 367, 541
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 4 cut(s) 97, 112, 157, 220
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 143, 261, 402
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 7 cut(s) 25, 44, 232, 278, 337, 399, 435
LweI GCATC 1 cut(s) 244
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 9 cut(s) 151, 214, 271, 286, 302, 315, 352, 421, 445
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MluCI AATT 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 7 cut(s) 9, 132, 138, 176, 187, 435, 477
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 324
MvnI CGCG 2 cut(s) 321, 494
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 1 cut(s) 120
NlaIII CATG 1 cut(s) 94
NmuCI GTSAC 8 cut(s) 151, 271, 286, 302, 315, 352, 421, 445
PaeR7I CTCGAG 1 cut(s) 370
PagI TCATGA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 437
PfeI GAWTC 2 cut(s) 8, 63
PspFI CCCAGC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 147
PspXI VCTCGAGB 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 519
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 147
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 1 cut(s) 232
SsiI CCGC 2 cut(s) 195, 492
TaaI ACNGT 4 cut(s) 97, 112, 157, 220
TaiI ACGT 1 cut(s) 366
TaqI TCGA 5 cut(s) 168, 252, 371, 440, 509
TasI AATT 1 cut(s) 232
TfiI GAWTC 2 cut(s) 8, 63
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 406, 432
TseFI GTSAC 8 cut(s) 151, 271, 286, 302, 315, 352, 421, 445
Tsp45I GTSAC 8 cut(s) 151, 271, 286, 302, 315, 352, 421, 445
TspDTI ATGAA 4 cut(s) 58, 131, 491, 515
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 2 cut(s) 406, 432
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.