Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018035

Physical Location & Seq

Genomic Coordinates Reverse (-)

13757989 .. 13758898

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG166100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTGGAATCAGAGAGGTTCAAGAAAATCCAGAAGAACAGGAAATGCTTTGCATACATTGGAATCTTCATTGTGTTCCAAATCATAGTCATGACCATTTTCGGATTGACCGTGATGAAGATCAAAACCCCGAGCGTGAGGCTGAGGTCCGTGACTGTCCAAACCATCGAAAGCACCTCCAATACTTCCTTCACCGCAACTCTCATTGCTGAAGTTGCCGTGAAGAACAAGAATTTCGGGAGCTACAGGTTCGATGCCACCAAGGCTAATGTGACCCACGGGGATGTCACGCTGGGAAGTGGTGACATTATCAAGTCACGCGCCGGTTTGAAGAAGACGAAGAGATTGAATGTGACCATTGATGTAAGCTCGGGTGGGGTGTCGGATAACAGCCTTGCCACTGAGCTGACTTCAGGGAATGTCACACTGAGGGCTCTTTCGAGGGTGACTGGTAAGGTGTCATTGATGGGGATGATGAAGAAGAGGAAGACCGCGAATATGAACTGCTCGATGATTGTTAATGTTCCAAACAAGGTTGTTTACGATTTGACTTGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

186

Amino Acids

20.4

Weight (kDa)

10.24

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018035)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03330
malus_domestica	MD06G1093300.v1.1 MD14G1114000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0196451
rosa_laevigata	RLG00000004014
rosa_multiflora	Rmu_co8342145.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259310
rosa_rugosa	Rorug07G0033500
rosa_samantha	Rh7CG166100 Rh7DG159100
rosa_wichuraiana	Rw7G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	321, 494
AciI	CCGC	2 cut(s)	195, 492
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	2 cut(s)	231, 396
AgsI	TTSAA	3 cut(s)	22, 331, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	3 cut(s)	243, 369, 406
AluI	AGCT	3 cut(s)	243, 369, 406
Ama87I	CYCGRG	2 cut(s)	130, 370
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	184, 314, 457
AvaI	CYCGRG	2 cut(s)	130, 370
AvaII	GGWCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	341, 494
BbvCI	CCTCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	173, 460
BceAI	ACGGC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	244
BglI	GCCNNNNNGGC	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	2 cut(s)	130, 370
BmgT120I	GGNCC	1 cut(s)	147
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	2 cut(s)	341, 494
Bpu10I	CCTNAGC	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	261, 277
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	261, 277
BseGI	GGATG	2 cut(s)	289, 477
BseJI	GATNNNNATC	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	134, 393, 419
BseNI	ACTGG	1 cut(s)	454
BseYI	CCCAGC	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	321, 494
BsiHKCI	CYCGRG	2 cut(s)	130, 370
BsiSI	CCGG	1 cut(s)	324
BsoBI	CYCGRG	2 cut(s)	130, 370
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	2 cut(s)	195, 492
BspCNI	CTCAG	3 cut(s)	135, 394, 420
BspFNI	CGCG	2 cut(s)	321, 494
BspHI	TCATGA	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	261, 277
BssMI	GATC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	112, 157
Bst6I	CTCTTC	2 cut(s)	335, 476
BstDEI	CTNAG	3 cut(s)	143, 402, 428
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	289, 477
BstFNI	CGCG	2 cut(s)	321, 494
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 263
BstSFI	CTRYAG	1 cut(s)	244
BstUI	CGCG	2 cut(s)	321, 494
BstV2I	GAAGAC	2 cut(s)	341, 494
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	289, 477
BtsIMutI	CAGTG	2 cut(s)	399, 425
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	147
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	7 cut(s)	142, 243, 266, 369, 393, 406, 434
CviKI_1	RGCY	7 cut(s)	142, 243, 266, 369, 393, 406, 434
DdeI	CTNAG	3 cut(s)	143, 402, 428
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	335, 476
EarI	CTCTTC	2 cut(s)	335, 476
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	231, 396
Eco88I	CYCGRG	2 cut(s)	130, 370
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	94
FaiI	YATR	4 cut(s)	55, 86, 92, 500
FatI	CATG	1 cut(s)	90
FokI	GGATG	2 cut(s)	296, 484
FriOI	GRGCYC	1 cut(s)	436
GlaI	GCGC	1 cut(s)	322
GsaI	CCCAGC	1 cut(s)	296
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	8, 63
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	3 cut(s)	184, 314, 457
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	3 cut(s)	13, 104, 385
Hpy188III	TCNNGA	4 cut(s)	22, 31, 91, 238
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	112, 157
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 263
HpyF3I	CTNAG	3 cut(s)	143, 402, 428
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	7 cut(s)	25, 44, 232, 278, 337, 399, 435
LweI	GCATC	1 cut(s)	244
MaeIII	GTNAC	8 cut(s)	151, 271, 286, 302, 315, 352, 421, 445
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	7 cut(s)	9, 132, 138, 187, 423, 435, 477
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	2 cut(s)	89, 282
MspI	CCGG	1 cut(s)	324
MvnI	CGCG	2 cut(s)	321, 494
MwoI	GCNNNNNNNGC	2 cut(s)	215, 263
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	8 cut(s)	151, 271, 286, 302, 315, 352, 421, 445
PagI	TCATGA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	8, 63
PspFI	CCCAGC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	89, 282
SaqAI	TTAA	1 cut(s)	519
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	9 cut(s)	20, 149, 179, 245, 251, 371, 408, 459, 537
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	2 cut(s)	89, 282
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	2 cut(s)	195, 492
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	112, 157
TaqI	TCGA	4 cut(s)	168, 252, 440, 509
TasI	AATT	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	8, 63
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	406, 432
TseFI	GTSAC	8 cut(s)	151, 271, 286, 302, 315, 352, 421, 445
Tsp45I	GTSAC	8 cut(s)	151, 271, 286, 302, 315, 352, 421, 445
TspDTI	ATGAA	4 cut(s)	58, 131, 491, 515
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	406, 432
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.