RLG00000004014

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018035
Physical Location & Seq
Forward (+)
55299814 .. 55301247
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004014

Sequence Viewer

Length: 945 bp
ATGTTGGAATCAGAGAGGTTCAAGAAAATCCAGAAGAACAGGAAATGCTTTGCATACATTGGAATCTTCATTGTGTTCCAAATCATAGTCCTGACCGTTTTCGGATTGACCGTGATGAAGATCAAAACCCCGAGCGTGAGGCTGAGGTCTGTGACGGTCCAAACCATCGAATCCAATACTTCCTTCACCGCAACTCTCATTGCTGAAGTTGCCGTGAAGAACAAGAATTTCGGGAGCTACAGGTTCGATGCCACCACGGCTAATGTGACCTACGGGGATGTTACGCTGGGAAGTGGTAACATTATCAAGGGACGCGCCGGTTTGAAGAAGACGAAGAGATTGAATGTGACCATTGACGTAAGCTCGAGTGGGGTGTCGGATAACAGCCTTGCCACTGAACTGGCTTCAGGGAATGTGACACTGAGGGCTCTTTCGAGGGTGACTGGTAAGGTGTCATTGATGGGGATGATGAAGAAGAGGAAGACCGCGAATATGAACTGCTCGATGATTGTTAATGTTCCAAACAAGGGTCGGCGGCTTGATGGGGTAGCACGGGCTAGGAGGCGGACTGGAGGTGATGAGGTCGTGGCGGCGGGGCTTGGCTTGGATCGGATTAACCCGACCTGGGTTGGGCTGTCGGTGTACGATCTGGGGAAGGTGACGGTGGAATGGGGTGGTGTCTCTCTATGGCGTGCCGGGAAGGGCGGAAGGATGATGACGGCGGTCCCGAGTCGGTGGCTGAGAGGCATTGTGGGTGGTCTGGTGGTGGTCGTAGCGGGATCAGGCCGCTGTTGGCTGGCGGCTCTTGACCTTCTTGACTCCATGGTTGGGGAGTACAGTTGCAGGTGGTGGTGTGCAGGCGGTGGTGTTTGCAGGTGGTGGTGGGTGTGGCGGCCTGCTGAGAGTTTTTGGTGTTTGGTTTCCTTATTTGATTTTCATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

315

Amino Acids

34.46

Weight (kDa)

10.29

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018035)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03330
malus_domestica MD06G1093300.v1.1 MD14G1114000.v1.1
rosa_chinensis RchiOBHm_Chr7g0196451
rosa_laevigata RLG00000004014
rosa_multiflora Rmu_co8342145.1_g000001
rosa_roxburghii Rroxscaffold_3G00259310
rosa_rugosa Rorug07G0033500
rosa_samantha Rh7CG166100 Rh7DG159100
rosa_wichuraiana Rw7G013790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 834, 864
Acc36I ACCTGC 2 cut(s) 834, 864
AccII CGCG 2 cut(s) 315, 488
AclWI GGATC 2 cut(s) 615, 787
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 225, 390
AfaI GTAC 2 cut(s) 644, 836
AfiI CCNNNNNNNGG 4 cut(s) 527, 625, 630, 828
AgsI TTSAA 3 cut(s) 22, 325, 343
AjnI CCWGG 1 cut(s) 623
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 2 cut(s) 237, 363
AluI AGCT 2 cut(s) 237, 363
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 2 cut(s) 615, 787
Ama87I CYCGRG 3 cut(s) 130, 364, 727
AoxI GGCC 2 cut(s) 784, 893
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 157, 724
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 4 cut(s) 178, 451, 587, 670
AvaI CYCGRG 3 cut(s) 130, 364, 727
AvaII GGWCC 2 cut(s) 157, 724
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 335, 488
BbvCI CCTCAGC 1 cut(s) 143
BccI CCATC 3 cut(s) 173, 454, 536
BceAI ACGGC 3 cut(s) 197, 273, 735
BciT130I CCWGG 1 cut(s) 625
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 238
BfuAI ACCTGC 2 cut(s) 834, 864
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 5 cut(s) 536, 591, 787, 801, 893
BlsI GCNGC 5 cut(s) 537, 592, 788, 802, 894
Bme1390I CCNGG 2 cut(s) 625, 697
Bme18I GGWCC 2 cut(s) 157, 724
BmeT110I CYCGRG 3 cut(s) 130, 364, 727
BmgT120I GGNCC 2 cut(s) 157, 724
BmiI GGNNCC 1 cut(s) 726
BmrFI CCNGG 2 cut(s) 625, 697
BmsI GCATC 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 722
BpiI GAAGAC 2 cut(s) 335, 488
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 697
BsaBI GATNNNNATC 2 cut(s) 119, 936
BsaJI CCNNGG 3 cut(s) 255, 624, 822
Bsc4I CCNNNNNNNGG 4 cut(s) 527, 625, 630, 828
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 3 cut(s) 405, 448, 574
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 2 cut(s) 119, 936
BseBI CCWGG 1 cut(s) 625
BseDI CCNNGG 3 cut(s) 255, 624, 822
BseGI GGATG 3 cut(s) 283, 471, 717
BseJI GATNNNNATC 2 cut(s) 119, 936
BseLI CCNNNNNNNGG 4 cut(s) 527, 625, 630, 828
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 4 cut(s) 134, 413, 731, 891
BseNI ACTGG 3 cut(s) 405, 448, 574
BseYI CCCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 2 cut(s) 315, 488
BshFI GGCC 2 cut(s) 786, 895
BsiHKCI CYCGRG 3 cut(s) 130, 364, 727
BsiSI CCGG 2 cut(s) 318, 696
BslFI GGGAC 2 cut(s) 324, 710
BslI CCNNNNNNNGG 4 cut(s) 527, 625, 630, 828
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 2 cut(s) 324, 710
BsnI GGCC 2 cut(s) 786, 895
BsoBI CYCGRG 3 cut(s) 130, 364, 727
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 4 cut(s) 120, 607, 646, 779
Bsp19I CCATGG 1 cut(s) 822
BspANI GGCC 2 cut(s) 786, 895
BspCNI CTCAG 4 cut(s) 135, 414, 732, 892
BspFNI CGCG 2 cut(s) 315, 488
BspLI GGNNCC 1 cut(s) 726
BspMI ACCTGC 2 cut(s) 834, 864
BspPI GGATC 2 cut(s) 615, 787
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 3 cut(s) 405, 448, 574
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 255, 624, 822
BssMI GATC 4 cut(s) 120, 607, 646, 779
BssT1I CCWWGG 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 5 cut(s) 97, 112, 157, 664, 839
Bst6I CTCTTC 2 cut(s) 329, 470
BstC8I GCNNGC 4 cut(s) 693, 798, 859, 897
BstDEI CTNAG 4 cut(s) 143, 422, 740, 900
BstDSI CCRYGG 2 cut(s) 255, 822
BstF5I GGATG 3 cut(s) 283, 471, 717
BstFNI CGCG 2 cut(s) 315, 488
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 4 cut(s) 123, 610, 649, 782
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 4 cut(s) 120, 607, 646, 779
BstMWI GCNNNNNNNGC 2 cut(s) 209, 257
BstNI CCWGG 1 cut(s) 625
BstPAI GACNNNNGTC 1 cut(s) 722
BstSCI CCNGG 2 cut(s) 623, 695
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 2 cut(s) 315, 488
BstV2I GAAGAC 2 cut(s) 335, 488
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuRI GGCC 2 cut(s) 786, 895
BtgI CCRYGG 2 cut(s) 255, 822
BtsCI GGATG 3 cut(s) 283, 471, 717
BtsIMutI CAGTG 2 cut(s) 393, 419
BveI ACCTGC 2 cut(s) 834, 864
Cac8I GCNNGC 4 cut(s) 693, 798, 859, 897
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 157, 724
CseI GACGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 643, 835
CviAII CATG 1 cut(s) 823
CviQI GTAC 2 cut(s) 643, 835
DdeI CTNAG 4 cut(s) 143, 422, 740, 900
DpnI GATC 4 cut(s) 122, 609, 648, 781
DpnII GATC 4 cut(s) 120, 607, 646, 779
Eam1104I CTCTTC 2 cut(s) 329, 470
EarI CTCTTC 2 cut(s) 329, 470
EciI GGCGGA 2 cut(s) 580, 720
Eco130I CCWWGG 1 cut(s) 822
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 157, 724
Eco57I CTGAAG 2 cut(s) 225, 390
Eco88I CYCGRG 3 cut(s) 130, 364, 727
EcoRII CCWGG 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 822
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 1 cut(s) 826
FaiI YATR 5 cut(s) 55, 86, 494, 688, 824
FaqI GGGAC 2 cut(s) 324, 710
FatI CATG 1 cut(s) 822
FauI CCCGC 2 cut(s) 586, 769
Fnu4HI GCNGC 5 cut(s) 536, 591, 787, 801, 893
FokI GGATG 3 cut(s) 290, 478, 724
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 5 cut(s) 536, 591, 787, 801, 893
FspBI CTAG 1 cut(s) 558
GlaI GCGC 1 cut(s) 316
GluI GCNGC 5 cut(s) 536, 591, 787, 801, 893
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 2 cut(s) 786, 895
HapII CCGG 2 cut(s) 318, 696
HgaI GACGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 317
Hin1II CATG 1 cut(s) 826
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 5 cut(s) 8, 63, 170, 730, 818
HpaII CCGG 2 cut(s) 318, 696
HphI GGTGA 4 cut(s) 178, 451, 587, 670
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 4 cut(s) 13, 104, 379, 612
Hpy188III TCNNGA 7 cut(s) 22, 31, 91, 232, 727, 806, 815
Hpy8I GTNNAC 1 cut(s) 643
HpyAV CCTTC 5 cut(s) 193, 649, 694, 702, 821
HpyCH4III ACNGT 5 cut(s) 97, 112, 157, 664, 839
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 53, 843, 857, 873
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 257
HpyF3I CTNAG 4 cut(s) 143, 422, 740, 900
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 1 cut(s) 826
HspAI GCGC 1 cut(s) 315
Kzo9I GATC 4 cut(s) 120, 607, 646, 779
LmnI GCTCC 1 cut(s) 234
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 558
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 8 cut(s) 151, 265, 280, 296, 346, 415, 439, 658
MalI GATC 4 cut(s) 122, 609, 648, 781
MboI GATC 4 cut(s) 120, 607, 646, 779
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 1 cut(s) 226
MlyI GAGTC 2 cut(s) 739, 812
MmeI TCCRAC 1 cut(s) 357
MseI TTAA 2 cut(s) 513, 615
MspA1I CMGCKG 1 cut(s) 789
MspI CCGG 2 cut(s) 318, 696
MspR9I CCNGG 2 cut(s) 625, 697
MvaI CCWGG 1 cut(s) 625
MvnI CGCG 2 cut(s) 315, 488
MwoI GCNNNNNNNGC 2 cut(s) 209, 257
NciI CCSGG 1 cut(s) 697
NcoI CCATGG 1 cut(s) 822
NdeII GATC 4 cut(s) 120, 607, 646, 779
NlaIII CATG 1 cut(s) 826
NlaIV GGNNCC 1 cut(s) 726
NmuCI GTSAC 6 cut(s) 151, 265, 346, 415, 439, 658
PaeR7I CTCGAG 1 cut(s) 364
PaqCI CACCTGC 2 cut(s) 834, 864
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 725
PfeI GAWTC 3 cut(s) 8, 63, 170
PkrI GCNGC 5 cut(s) 537, 592, 788, 802, 894
PleI GAGTC 2 cut(s) 738, 812
PpsI GAGTC 2 cut(s) 738, 812
PshAI GACNNNNGTC 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 1 cut(s) 726
PspPI GGNCC 2 cut(s) 157, 724
PspXI VCTCGAGB 1 cut(s) 364
RsaI GTAC 2 cut(s) 644, 836
RsaNI GTAC 2 cut(s) 643, 835
SaqAI TTAA 2 cut(s) 513, 615
SatI GCNGC 5 cut(s) 536, 591, 787, 801, 893
Sau3AI GATC 4 cut(s) 120, 607, 646, 779
Sau96I GGNCC 2 cut(s) 157, 724
SchI GAGTC 2 cut(s) 739, 812
ScrFI CCNGG 2 cut(s) 625, 697
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 364
SinI GGWCC 2 cut(s) 157, 724
SlaI CTCGAG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 1 cut(s) 226
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 623, 695
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 5 cut(s) 97, 112, 157, 664, 839
TaiI ACGT 1 cut(s) 360
TaqI TCGA 5 cut(s) 168, 246, 365, 434, 503
TasI AATT 1 cut(s) 226
TatI WGTACW 1 cut(s) 834
TauI GCSGC 5 cut(s) 538, 593, 789, 803, 895
TfiI GAWTC 3 cut(s) 8, 63, 170
Tru1I TTAA 2 cut(s) 513, 615
Tru9I TTAA 2 cut(s) 513, 615
TscAI CASTG 2 cut(s) 400, 426
TseFI GTSAC 6 cut(s) 151, 265, 346, 415, 439, 658
Tsp45I GTSAC 6 cut(s) 151, 265, 346, 415, 439, 658
TspDTI ATGAA 5 cut(s) 58, 131, 485, 509, 926
TspRI CASTG 2 cut(s) 400, 426
VpaK11BI GGWCC 2 cut(s) 157, 724
XapI RAATTY 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 364
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.