MD06G1148400.v1.1

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0019270
Physical Location & Seq
Reverse (-)
29107492 .. 29108667
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1148400.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGTCCCAACCTATTGTTCCTGAAATCGATTATATTGAGGAGAAGAAAGACGGGGAAGCCTACCGGAAAATTGATGCCGAAATATGTGGAATGCTGCCAAATCTTCCGAAAGAGAAGGGTTGGACCTCCGAAGACTTGGTTCAGTACCAAGGCTTCTGGATATATCCTACCTTTGCCTTAAAAGCAGCGGTGCAGCTTCAACACCATTTCAACTTATTCCAAACAACCGGAAGTTCTACCAGCGCTGCCTGTGGGTCGTTGCCCATGTACTTCTTAGCCACACTTCCGAAATCAGGTACGACGTGGCTTAGAGCACTCATGTTTGCTACACTCAACAGAAGCCTCTATGATGCTGCCTCTCCTCATCATCCCTTGCTCACAACTGGGCCCCACGACTGTTTTCCTATCTTGGAAATGGATAACATGCTTGGAAACCATGATCACAGCCGTCCCGTAACCTCACTTGATCATGATCAACACGACGATCGTGACGGTGGTGATGCTATGATTGATAATTATGTCCCGCCTACAAGCACTACTCAACTCTTTGCGACCCACCTGCCTTACTCTTTGTTCCCAAAATCAGTAACTACTTCTAGTAGTACTTACGGTGTGTCAAAATTCGTTTACATTTGCCGTAACCCTAAAGATGTATTCATTTCTTTATGGAAGTTCGGGAGCAAAGTTAAAGCAGTAAACACAGGACTTGCACCCTTCTCACTAGAAGAAGCATTTGAGCTTTTCTGCCGTGGAGTCTGCCCATACGGGCCCTATTGGGACCATGTGCTAGGGTTTTGGAAAGCAAGCTTGGAAATGCCAGAGCAAGTTTTGTTCTTAAAATATGAGGATCTCAAGAAGGAGCCATCTGCTAATGTGAAGAGACTGGCTGAGTTCTTGGGTCAACCTTTTTCAGAGGAGGAGGAGAGCAAAGGGGTGGTGCAGCAGATCATAAAGCTTTGTAGTTTTGAGAATCTGAGCAGCTTGGAGATAAATAAAACCTCCAGGACGCAACAGTACTTTGTTAAAGCCAATATTGTGGTTGAGAACAGTGATTTTTTCAGGAAAGGCCAAGTTGGGGATTGGAAAAACTTCTTCACTGATGACATGGCAAAACGTATGGATCAGATCATAGATGAGAAGTTCAGTGGTTCTGGATTGACATTTGCTAATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

392

Amino Acids

44.27

Weight (kDa)

5.5

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 90 - 385 1.3e-66 Sulfotransferase domain
Sulfotransfer_3 PF13469 91 - 305 2e-09 Sulfotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 567
Acc36I ACCTGC 1 cut(s) 567
AciI CCGC 2 cut(s) 188, 524
AclWI GGATC 2 cut(s) 855, 1128
AcsI RAATTY 1 cut(s) 620
AfaI GTAC 5 cut(s) 146, 269, 298, 604, 1016
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 293, 1075
AgsI TTSAA 2 cut(s) 200, 211
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 1 cut(s) 1001
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 791, 823
AluBI AGCT 5 cut(s) 196, 739, 807, 955, 981
AluI AGCT 5 cut(s) 196, 739, 807, 955, 981
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 874
AlwI GGATC 2 cut(s) 855, 1128
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 3 cut(s) 386, 767, 1066
ApaI GGGCCC 2 cut(s) 390, 771
ApeKI GCWGC 7 cut(s) 94, 185, 193, 245, 353, 940, 978
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 1088
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 6 cut(s) 123, 386, 387, 767, 768, 778
AsuHPI GGTGA 1 cut(s) 509
AvaII GGWCC 2 cut(s) 123, 778
BaeGI GKGCMC 2 cut(s) 390, 771
BanII GRGCYC 2 cut(s) 390, 771
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 7 cut(s) 81, 197, 205, 232, 340, 952, 990
BccI CCATC 1 cut(s) 871
BceAI ACGGC 3 cut(s) 432, 621, 732
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 1 cut(s) 1003
BclI TGATCA 3 cut(s) 439, 466, 472
BcoDI GTCTC 1 cut(s) 874
BfaI CTAG 3 cut(s) 597, 722, 788
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 567
BisI GCNGC 7 cut(s) 95, 186, 194, 246, 354, 941, 979
BlsI GCNGC 7 cut(s) 96, 187, 195, 247, 355, 942, 980
BmcAI AGTACT 2 cut(s) 604, 1016
Bme1390I CCNGG 1 cut(s) 1003
Bme18I GGWCC 2 cut(s) 123, 778
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 6 cut(s) 123, 386, 387, 767, 768, 778
BmiI GGNNCC 5 cut(s) 388, 389, 769, 779, 861
BmrFI CCNGG 1 cut(s) 1003
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 64, 340, 490
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 985
BpuEI CTTGAG 1 cut(s) 836
Bsa29I ATCGAT 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 148, 748
BsaWI WCCGGW 2 cut(s) 63, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 1075
Bse1I ACTGG 2 cut(s) 388, 888
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 1003
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 148, 748
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 293, 1075
BseMII CTCAG 2 cut(s) 879, 965
BseNI ACTGG 2 cut(s) 388, 888
BseRI GAGGAG 5 cut(s) 53, 351, 929, 932, 935
BseSI GKGCMC 2 cut(s) 390, 771
BseXI GCAGC 7 cut(s) 81, 197, 205, 232, 340, 952, 990
BsgI GTGCAG 2 cut(s) 212, 959
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 3 cut(s) 388, 769, 1068
BshVI ATCGAT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 2 cut(s) 64, 228
BslFI GGGAC 3 cut(s) 435, 506, 791
BslI CCNNNNNNNGG 2 cut(s) 293, 1075
BsmAI GTCTC 1 cut(s) 874
BsmFI GGGAC 3 cut(s) 435, 506, 791
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 3 cut(s) 388, 769, 1068
Bsp120I GGGCCC 2 cut(s) 386, 767
Bsp1286I GDGCHC 3 cut(s) 316, 390, 771
Bsp143I GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
BspACI CCGC 2 cut(s) 188, 524
BspANI GGCC 3 cut(s) 388, 769, 1068
BspCNI CTCAG 2 cut(s) 880, 966
BspDI ATCGAT 1 cut(s) 27
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 5 cut(s) 388, 389, 769, 779, 861
BspMI ACCTGC 1 cut(s) 567
BspPI GGATC 2 cut(s) 855, 1128
BsrI ACTGG 2 cut(s) 388, 888
BssECI CCNNGG 2 cut(s) 148, 748
BssMI GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 1003
Bst4CI ACNGT 5 cut(s) 398, 494, 611, 1014, 1049
Bst6I CTCTTC 1 cut(s) 872
BstC8I GCNNGC 1 cut(s) 805
BstDEI CTNAG 4 cut(s) 274, 308, 888, 974
BstDSI CCRYGG 1 cut(s) 748
BstF5I GGATG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 8 cut(s) 442, 469, 475, 487, 850, 948, 1123, 1128
BstMAI GTCTC 1 cut(s) 874
BstMBI GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 1003
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 1001
BstSLI GKGCMC 2 cut(s) 390, 771
BstV1I GCAGC 7 cut(s) 81, 197, 205, 232, 340, 952, 990
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 847
BstXI CCANNNNNNTGG 1 cut(s) 1036
BstYI RGATCY 1 cut(s) 847
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 3 cut(s) 388, 769, 1068
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 748
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 3 cut(s) 1054, 1095, 1150
BveI ACCTGC 1 cut(s) 567
Cac8I GCNNGC 1 cut(s) 805
CciI TCATGA 1 cut(s) 469
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 6 cut(s) 123, 386, 387, 767, 768, 778
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 1015
Csp6I GTAC 5 cut(s) 145, 268, 297, 603, 1015
CviAII CATG 7 cut(s) 265, 319, 424, 437, 470, 782, 1105
CviQI GTAC 5 cut(s) 145, 268, 297, 603, 1015
DdeI CTNAG 4 cut(s) 274, 308, 888, 974
DpnI GATC 8 cut(s) 441, 468, 474, 486, 849, 947, 1122, 1127
DpnII GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
Eam1104I CTCTTC 1 cut(s) 872
EarI CTCTTC 1 cut(s) 872
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 390, 771
Eco47I GGWCC 2 cut(s) 123, 778
Eco47III AGCGCT 1 cut(s) 244
EcoO109I RGGNCCY 2 cut(s) 387, 768
EcoRII CCWGG 1 cut(s) 1001
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 390, 771
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 7 cut(s) 268, 322, 427, 440, 473, 785, 1108
FaqI GGGAC 3 cut(s) 435, 506, 791
FatI CATG 7 cut(s) 264, 318, 423, 436, 469, 781, 1104
FauI CCCGC 1 cut(s) 531
FbaI TGATCA 3 cut(s) 439, 466, 472
Fnu4HI GCNGC 7 cut(s) 95, 186, 194, 246, 354, 941, 979
FokI GGATG 1 cut(s) 354
FriOI GRGCYC 2 cut(s) 390, 771
Fsp4HI GCNGC 7 cut(s) 95, 186, 194, 246, 354, 941, 979
FspBI CTAG 3 cut(s) 597, 722, 788
GlaI GCGC 1 cut(s) 244
GluI GCNGC 7 cut(s) 95, 186, 194, 246, 354, 941, 979
GsuI CTGGAG 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 388, 769, 1068
HapII CCGG 2 cut(s) 64, 228
HgaI GACGC 1 cut(s) 1015
HhaI GCGC 1 cut(s) 245
Hin1II CATG 7 cut(s) 268, 322, 427, 440, 473, 785, 1108
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 902
HindII GTYRAC 1 cut(s) 902
HindIII AAGCTT 2 cut(s) 805, 953
HinfI GANTC 2 cut(s) 753, 970
HpaII CCGG 2 cut(s) 64, 228
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 3 cut(s) 628, 697, 902
Hpy188I TCNGA 6 cut(s) 108, 130, 288, 913, 975, 1125
Hpy188III TCNNGA 8 cut(s) 20, 157, 470, 488, 676, 853, 1060, 1152
Hpy8I GTNNAC 3 cut(s) 628, 697, 902
Hpy99I CGWCG 2 cut(s) 304, 485
HpyAV CCTTC 3 cut(s) 109, 724, 850
HpyCH4III ACNGT 5 cut(s) 398, 494, 611, 1014, 1049
HpyCH4IV ACGT 2 cut(s) 302, 1114
HpyCH4V TGCA 3 cut(s) 193, 710, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 274, 308, 888, 974
HpySE526I ACGT 2 cut(s) 302, 1114
Hsp92II CATG 7 cut(s) 268, 322, 427, 440, 473, 785, 1108
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 3 cut(s) 439, 466, 472
Kzo9I GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
LmnI GCTCC 2 cut(s) 678, 859
Lsp1109I GCAGC 7 cut(s) 81, 197, 205, 232, 340, 952, 990
LweI GCATC 3 cut(s) 64, 340, 490
MaeI CTAG 3 cut(s) 597, 722, 788
MaeII ACGT 2 cut(s) 302, 1114
MaeIII GTNAC 4 cut(s) 454, 488, 586, 638
MalI GATC 8 cut(s) 441, 468, 474, 486, 849, 947, 1122, 1127
MboI GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
MboII GAAGA 6 cut(s) 55, 95, 143, 737, 889, 1084
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 3 cut(s) 316, 390, 771
MluCI AATT 3 cut(s) 69, 514, 620
MlyI GAGTC 1 cut(s) 762
MmeI TCCRAC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 1088
MseI TTAA 4 cut(s) 179, 687, 836, 1023
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 64, 228
MspR9I CCNGG 1 cut(s) 1003
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 1003
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
NlaIII CATG 7 cut(s) 268, 322, 427, 440, 473, 785, 1108
NlaIV GGNNCC 5 cut(s) 388, 389, 769, 779, 861
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 1 cut(s) 427
PagI TCATGA 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 567
PctI GAATGC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 1088
PfeI GAWTC 1 cut(s) 970
PfoI TCCNGGA 1 cut(s) 1001
PkrI GCNGC 7 cut(s) 96, 187, 195, 247, 355, 942, 980
Ple19I CGATCG 1 cut(s) 487
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 1001
PspGI CCWGG 1 cut(s) 1001
PspN4I GGNNCC 5 cut(s) 388, 389, 769, 779, 861
PspOMI GGGCCC 2 cut(s) 386, 767
PspPI GGNCC 6 cut(s) 123, 386, 387, 767, 768, 778
PsuI RGATCY 1 cut(s) 847
PvuI CGATCG 1 cut(s) 487
RsaI GTAC 5 cut(s) 146, 269, 298, 604, 1016
RsaNI GTAC 5 cut(s) 145, 268, 297, 603, 1015
SaqAI TTAA 4 cut(s) 179, 687, 836, 1023
SatI GCNGC 7 cut(s) 95, 186, 194, 246, 354, 941, 979
Sau3AI GATC 8 cut(s) 439, 466, 472, 484, 847, 945, 1120, 1125
Sau96I GGNCC 6 cut(s) 123, 386, 387, 767, 768, 778
ScaI AGTACT 2 cut(s) 604, 1016
SchI GAGTC 1 cut(s) 762
ScrFI CCNGG 1 cut(s) 1003
SduI GDGCHC 3 cut(s) 316, 390, 771
SfaNI GCATC 3 cut(s) 64, 340, 490
SinI GGWCC 2 cut(s) 123, 778
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 3 cut(s) 69, 514, 620
SsiI CCGC 2 cut(s) 188, 524
SspI AATATT 1 cut(s) 1033
SspMI CTAG 3 cut(s) 597, 722, 788
StyD4I CCNGG 1 cut(s) 1001
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 5 cut(s) 398, 494, 611, 1014, 1049
TaiI ACGT 2 cut(s) 305, 1117
TaqI TCGA 1 cut(s) 27
TasI AATT 3 cut(s) 69, 514, 620
TatI WGTACW 3 cut(s) 267, 602, 1014
TfiI GAWTC 1 cut(s) 970
Tru1I TTAA 4 cut(s) 179, 687, 836, 1023
Tru9I TTAA 4 cut(s) 179, 687, 836, 1023
TscAI CASTG 3 cut(s) 1054, 1102, 1150
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 7 cut(s) 94, 185, 193, 245, 353, 940, 978
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 1 cut(s) 646
TspRI CASTG 3 cut(s) 1054, 1102, 1150
VpaK11BI GGWCC 2 cut(s) 123, 778
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 1088
XspI CTAG 3 cut(s) 597, 722, 788
ZrmI AGTACT 2 cut(s) 604, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.