MD06G1149400.v1.1

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0019270
Physical Location & Seq
Forward (+)
29185939 .. 29186301
363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1149400.v1.1.491

Sequence Viewer

Length: 363 bp
ATGCCAGAGCGAGTTTTGTTCTTAAAATATGAGGATCTCAGGAAGGAGCCATCTGCTAATGTGAAGAGACTGGCTGAATTCTCGGGTCAACCTTTTTCAGATGAGGACGAAAGCAAAGGGCTGATGCAGCAGATCATAAAGCTTTGTAGTTTTGAGAATCTGAGCTGCTTGGAGGTAAATAAAACCTCCAAGACGCAACGGTACTTTATTAAAGCCAATCTTGTCATCGAGAACAGTGACTTCTTCGGGAAAGGCCAAGTTGGGGATTGGAAGAACTTCTTCACTGATGACATGGCAAAACGTATGGATCATATCATAGATGAAAGGATCAGTGGTTCTGGATTGACATTTGCCAATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

5.45

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 2 - 114 7.2e-26 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 42, 315, 335
AcsI RAATTY 1 cut(s) 77
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 262
AloI GAACNNNNNNTCC 2 cut(s) 319, 351
AluBI AGCT 2 cut(s) 142, 165
AluI AGCT 2 cut(s) 142, 165
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 3 cut(s) 42, 315, 335
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 2 cut(s) 127, 165
ApoI RAATTY 1 cut(s) 77
Asp700I GAANNNNTTC 2 cut(s) 275, 278
AvaI CYCGRG 1 cut(s) 82
BbvI GCAGC 2 cut(s) 139, 152
BccI CCATC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 61
BisI GCNGC 2 cut(s) 128, 166
BlsI GCNGC 2 cut(s) 129, 167
BmeT110I CYCGRG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 52, 152
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 139, 152
BshFI GGCC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 4 cut(s) 34, 132, 307, 327
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 51, 153
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 3 cut(s) 42, 315, 335
BsrI ACTGG 1 cut(s) 75
BssMI GATC 4 cut(s) 34, 132, 307, 327
Bst4CI ACNGT 2 cut(s) 201, 236
Bst6I CTCTTC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 38, 161
BstKTI GATC 4 cut(s) 37, 135, 310, 330
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 34, 132, 307, 327
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 139, 152
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 241, 282, 337
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 292
CviJI RGCY 7 cut(s) 49, 74, 121, 142, 165, 215, 255
CviKI_1 RGCY 7 cut(s) 49, 74, 121, 142, 165, 215, 255
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 38, 161
DpnI GATC 4 cut(s) 36, 134, 309, 329
DpnII GATC 4 cut(s) 34, 132, 307, 327
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 77
FaeI CATG 1 cut(s) 295
FaiI YATR 7 cut(s) 30, 137, 293, 305, 312, 317, 361
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 263, 295
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 128, 166
Fsp4HI GCNGC 2 cut(s) 128, 166
GluI GCNGC 2 cut(s) 128, 166
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 295
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 100, 162
Hpy188III TCNNGA 4 cut(s) 40, 229, 247, 339
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 201, 236
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 38, 161
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 4 cut(s) 34, 132, 307, 327
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 18, 25, 56, 324
Lsp1109I GCAGC 2 cut(s) 139, 152
LweI GCATC 1 cut(s) 114
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 236
MalI GATC 4 cut(s) 36, 134, 309, 329
MboI GATC 4 cut(s) 34, 132, 307, 327
MboII GAAGA 4 cut(s) 76, 235, 271, 283
MflI RGATCY 1 cut(s) 34
MluCI AATT 1 cut(s) 77
MnlI CCTC 4 cut(s) 25, 97, 166, 196
MroXI GAANNNNTTC 2 cut(s) 275, 278
MseI TTAA 2 cut(s) 23, 210
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeII GATC 4 cut(s) 34, 132, 307, 327
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 236
PdmI GAANNNNTTC 2 cut(s) 275, 278
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 129, 167
PspN4I GGNNCC 1 cut(s) 48
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 23, 210
SatI GCNGC 2 cut(s) 128, 166
Sau3AI GATC 4 cut(s) 34, 132, 307, 327
SetI ASST 6 cut(s) 94, 144, 167, 177, 188, 304
SfaNI GCATC 1 cut(s) 114
Sse9I AATT 1 cut(s) 77
TaaI ACNGT 2 cut(s) 201, 236
TaiI ACGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 23, 210
Tru9I TTAA 2 cut(s) 23, 210
TscAI CASTG 3 cut(s) 241, 289, 337
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 127, 165
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 3 cut(s) 241, 289, 337
XapI RAATTY 1 cut(s) 77
XmnI GAANNNNTTC 2 cut(s) 275, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.