MD06G1198500.v1.1

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015628
Physical Location & Seq
Forward (+)
33241757 .. 33244343
2587 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1198500.v1.1.491

Sequence Viewer

Length: 1836 bp
ATGGGAGAGATTGATACCAAACCAATTGAATCAGTCCGGGCTGCTTTGTCCTTGTTTGAAGAGAAGACTGATCACCGGAAAACCCGGGTTTCCGGCACAGATAAGGATAGTGAGAAAGAGAGGGAGCTTGAAGGTGTGTTGAAGGATTTGGCCAATTACAAGGTGCAGCTGGAAGCAAAAGATGCTGCCTACATGCAAGCCCTTCTCAAGCTGCAACACCACCAGTACACAGCAGTTGAACTCTCCGCTCTCCTTGAAAACATCGAGTTTGAGAGAGATAAGTACGTTGAGGAATGTAAAGAGGCTCGGGTACAGATATACAAACTCGAATCCAAGGTAACGGAGATGGCAGATCAGTTGACGGAGACTCTGAAGGTGAGAGAGCAGCTCATGCATGTTTTTAGTGAGTTGAAGGCTACACAAGCAGAGCTGCTTAGCATGGAAACAAAACTCGCGTACGCTAGAGATTCGGAGCTAAAAGCTCTATCGCAAGCAGAGCTGATGGAAACAGCTTTCGTGATGGAAAAAGAGAGGGCAGAAGAGCTTCTTAAACATGTCTCGGAGTTAAGTGAAGCCATGGTTATGTCAAAGGTTGCTGCTAGTGAAGGAGAGAAAGAGAAGTTGGCAATCTTATCTGCGAAAGATGCTGAGTTTGAGGTGGCTATACAGGCTGCTCTTCTAGCGCAGGAGCAGCTTGAAGATTCAAACAAACAAAAGGCAAAGATGGAGGAGTTGGAGGATCAGCTCCTAGCCAAGTCTTCGTTCATTGAGATGCTTCAGTTGGAGATTAAACAGGTGAATGAAAACCTTAGTTTCTCTGAGATGGCGTCTTCTGATGCGATGAATGACTTGAAGCAGCTGGAAAAGGAGTTAGAAGAGAAGGAAAGAAAGATCTCGGATCAGGAAGGTTTCATCAAGGCGCTAGAAATGGAACTGAATCAATTAAAATTGGAGCTTATTGATGCAAATCAAGTGGCCAACAGCCTGAAGCGCGACGTTGAAGTTCTTACTGAGGATTTACAGAAAGCTATTATAGAGCTTGGTGAGATGGCAGAAAGGGAAAACAATGCTCTGGTTGAGATAGCAATGCTGGAATCTGAGCTTCATAGAGGGAGGTCAAAAATTGCAGCAGCAGAGGCAACTGAAGCAAGAGCTGAAAATGTGAAATCGGGGTTGTACCTCGCGATTCAGCAACTAGCAATAGAAGCTGAAACTGCCAAGAACGAAAACAGAATGTTAAAGCAAGGAGCAGATAGCGTAGACGAAGAAACGGACGAACAATCTCCCCTTGTTGATTTTGTTGAGGTTTCCGAAATTGGTGAACAGAAGGAAGAAGCTGAAGAGCGAAAGGATGAGAATGATTACCAAGTAACAATTTCGTTGAAGGAGTACGAGTCCTTGGTTAAGAAGGCTGAGCAGGCTGATCAAATTCCTTTGTCATTGGCGGAAGGCTTTAGCCGTCAGTTCAGCTTCAGCGCCGCGGAAGACAAGTCAGAAAATTTGAAGAAGGAGTTGGAAGCTGCAATGGAAAAGGTTACGCAATTCAGGAACCGGGCTGAGCAGGCTACTACTAGGGCTGATCTCGCTGAGAGAGCGAAGGAAAGACTAGAGGACCAGATAAGGATTCGGCGGGAGGTGAAGCAAAGGAGAAAAGCTGCTCTTGCCGCACTTAGGGAGGTATCTCTTCCTAAACAATTTAGCCCTCCCGAGTACGAATCTCCAGATGAATTTAAGCCTCCTGCACATGAATCTGGAGAAGAATTTATGCCTCACGCATCAGAAGAAACACACAAAAAACGTCTGCAATTGCGTGAGGTACTTAAAATGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

612

Amino Acids

69.74

Weight (kDa)

4.8

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 3 - 426 8.9e-17 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14430
malus_domestica MD06G1198500.v1.1 MD14G1206000.v1.1
prunus_persica Prupe.5G199300_v2.0.a1 Prupe.5G199300_v2.0.a1
pyrus_communis pycom14g17040
rosa_chinensis RchiOBHm_Chr7g0182231
rosa_laevigata RLG00000005138
rosa_multiflora Rmu_sc0000003.1_g000012
rosa_roxburghii Rroxscaffold_3G00271400
rosa_rugosa Rorug06G0446300
rosa_samantha Rh7AG049300 Rh7BG049400 Rh7CG050700 Rh7DG048600
rosa_wichuraiana Rw7G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 1260
AccII CGCG 4 cut(s) 455, 993, 1184, 1481
AciI CCGC 6 cut(s) 246, 1445, 1479, 1481, 1630, 1665
AclWI GGATC 2 cut(s) 747, 906
AcoI YGGCCR 2 cut(s) 150, 975
AcsI RAATTY 5 cut(s) 1428, 1498, 1727, 1760, 1829
AcuI CTGAAG 6 cut(s) 392, 761, 1007, 1164, 1359, 1456
AcyI GRCGYC 1 cut(s) 827
AfaI GTAC 8 cut(s) 227, 284, 312, 458, 1178, 1391, 1712, 1818
AfiI CCNNNNNNNGG 1 cut(s) 1671
AflIII ACRYGT 1 cut(s) 553
AjuI GAANNNNNNNTTGG 6 cut(s) 605, 637, 746, 778, 1496, 1528
Alw26I GTCTC 2 cut(s) 359, 562
AlwI GGATC 2 cut(s) 747, 906
Ama87I CYCGRG 3 cut(s) 84, 306, 1706
AoxI GGCC 2 cut(s) 150, 975
ApoI RAATTY 5 cut(s) 1428, 1498, 1727, 1760, 1829
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 4 cut(s) 685, 922, 993, 1478
AspS9I GGNCC 1 cut(s) 1612
AsuC2I CCSGG 4 cut(s) 38, 85, 86, 1553
AsuHPI GGTGA 6 cut(s) 65, 388, 808, 1055, 1331, 1648
AvaI CYCGRG 3 cut(s) 84, 306, 1706
AvaII GGWCC 1 cut(s) 1612
BalI TGGCCA 2 cut(s) 152, 977
BbsI GAAGAC 4 cut(s) 71, 750, 822, 1491
BccI CCATC 6 cut(s) 340, 496, 514, 718, 817, 1042
BceAI ACGGC 1 cut(s) 1443
BclI TGATCA 2 cut(s) 70, 1423
BcnI CCSGG 4 cut(s) 38, 85, 86, 1553
BcoDI GTCTC 2 cut(s) 359, 562
BfaI CTAG 9 cut(s) 462, 600, 680, 749, 923, 1196, 1572, 1607, 1834
BfoI RGCGCY 2 cut(s) 923, 1479
BglII AGATCT 1 cut(s) 891
BlpI GCTNAGC 3 cut(s) 434, 1413, 1557
Bme1390I CCNGG 4 cut(s) 38, 85, 86, 1553
Bme18I GGWCC 1 cut(s) 1612
BmeT110I CYCGRG 3 cut(s) 84, 306, 1706
BmgT120I GGNCC 1 cut(s) 1612
BmiI GGNNCC 1 cut(s) 1550
BmrFI CCNGG 4 cut(s) 38, 85, 86, 1553
BmsI GCATC 6 cut(s) 172, 634, 762, 826, 952, 1784
BpiI GAAGAC 4 cut(s) 71, 750, 822, 1491
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 2 cut(s) 1704, 1773
Bpu1102I GCTNAGC 3 cut(s) 434, 1413, 1557
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 4 cut(s) 38, 85, 86, 1553
BsaBI GATNNNNATC 1 cut(s) 966
BsaHI GRCGYC 1 cut(s) 827
BsaJI CCNNGG 5 cut(s) 84, 333, 576, 1398, 1479
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 1379, 1409
Bsc4I CCNNNNNNNGG 1 cut(s) 1671
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 2 cut(s) 1092, 1530
Bse8I GATNNNNATC 1 cut(s) 966
BseDI CCNNGG 5 cut(s) 84, 333, 576, 1398, 1479
BseGI GGATG 1 cut(s) 1357
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 1 cut(s) 1671
BseMI GCAATG 2 cut(s) 1092, 1530
BseMII CTCAG 7 cut(s) 639, 810, 1002, 1089, 1404, 1548, 1578
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 743
BsgI GTGCAG 2 cut(s) 185, 1725
Bsh1236I CGCG 4 cut(s) 455, 993, 1184, 1481
BshFI GGCC 2 cut(s) 152, 977
BsiHKCI CYCGRG 3 cut(s) 84, 306, 1706
BsiSI CCGG 5 cut(s) 37, 76, 85, 93, 1552
BsiWI CGTACG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 1671
BsmAI GTCTC 2 cut(s) 359, 562
BsnI GGCC 2 cut(s) 152, 977
BsoBI CYCGRG 3 cut(s) 84, 306, 1706
Bsp143I GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
Bsp1720I GCTNAGC 3 cut(s) 434, 1413, 1557
Bsp19I CCATGG 1 cut(s) 576
Bsp68I TCGCGA 1 cut(s) 1184
BspACI CCGC 6 cut(s) 246, 1445, 1479, 1481, 1630, 1665
BspANI GGCC 2 cut(s) 152, 977
BspCNI CTCAG 7 cut(s) 640, 811, 1003, 1090, 1405, 1549, 1579
BspFNI CGCG 4 cut(s) 455, 993, 1184, 1481
BspLI GGNNCC 1 cut(s) 1550
BspPI GGATC 2 cut(s) 747, 906
BspQI GCTCTTC 3 cut(s) 534, 681, 1335
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 1092, 1530
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 5 cut(s) 84, 333, 576, 1398, 1479
BssMI GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
BssNI GRCGYC 1 cut(s) 827
BssT1I CCWWGG 3 cut(s) 333, 576, 1398
Bst6I CTCTTC 6 cut(s) 54, 534, 681, 870, 1335, 1689
BstACI GRCGYC 1 cut(s) 827
BstAPI GCANNNNNTGC 2 cut(s) 182, 391
BstC8I GCNNGC 4 cut(s) 198, 492, 1419, 1563
BstDSI CCRYGG 2 cut(s) 576, 1479
BstF5I GGATG 1 cut(s) 1357
BstFNI CGCG 4 cut(s) 455, 993, 1184, 1481
BstH2I RGCGCY 2 cut(s) 923, 1479
BstHHI GCGC 4 cut(s) 685, 922, 993, 1478
BstKTI GATC 7 cut(s) 73, 355, 742, 894, 901, 1426, 1582
BstMAI GTCTC 2 cut(s) 359, 562
BstMBI GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
BstNSI RCATGY 3 cut(s) 196, 398, 557
BstSCI CCNGG 4 cut(s) 36, 83, 84, 1551
BstUI CGCG 4 cut(s) 455, 993, 1184, 1481
BstV2I GAAGAC 4 cut(s) 71, 750, 822, 1491
BstX2I RGATCY 1 cut(s) 891
BstYI RGATCY 1 cut(s) 891
BsuRI GGCC 2 cut(s) 152, 977
BtgI CCRYGG 2 cut(s) 576, 1479
BtgZI GCGATG 1 cut(s) 854
BtsCI GGATG 1 cut(s) 1357
BtuMI TCGCGA 1 cut(s) 1184
Cac8I GCNNGC 4 cut(s) 198, 492, 1419, 1563
CfoI GCGC 4 cut(s) 685, 922, 993, 1478
Cfr13I GGNCC 1 cut(s) 1612
Cfr42I CCGCGG 1 cut(s) 1482
Cfr9I CCCGGG 1 cut(s) 84
CseI GACGC 1 cut(s) 816
Csp6I GTAC 8 cut(s) 226, 283, 311, 457, 1177, 1390, 1711, 1817
CspCI CAANNNNNGTGG 2 cut(s) 954, 989
CviAII CATG 7 cut(s) 193, 391, 395, 439, 554, 577, 1745
CviQI GTAC 8 cut(s) 226, 283, 311, 457, 1177, 1390, 1711, 1817
DpnI GATC 7 cut(s) 72, 354, 741, 893, 900, 1425, 1581
DpnII GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
EaeI YGGCCR 2 cut(s) 150, 975
Eam1104I CTCTTC 6 cut(s) 54, 534, 681, 870, 1335, 1689
EarI CTCTTC 6 cut(s) 54, 534, 681, 870, 1335, 1689
EciI GGCGGA 1 cut(s) 1460
Eco130I CCWWGG 3 cut(s) 333, 576, 1398
Eco47I GGWCC 1 cut(s) 1612
Eco57I CTGAAG 6 cut(s) 392, 761, 1007, 1164, 1359, 1456
Eco88I CYCGRG 3 cut(s) 84, 306, 1706
EcoT14I CCWWGG 3 cut(s) 333, 576, 1398
EcoT22I ATGCAT 1 cut(s) 396
ErhI CCWWGG 3 cut(s) 333, 576, 1398
FaeI CATG 7 cut(s) 196, 394, 398, 442, 557, 580, 1748
FalI AAGNNNNNCTT 4 cut(s) 531, 563, 1644, 1676
FatI CATG 7 cut(s) 192, 390, 394, 438, 553, 576, 1744
FauI CCCGC 1 cut(s) 1623
FbaI TGATCA 2 cut(s) 70, 1423
FblI GTMKAC 1 cut(s) 1260
FokI GGATG 1 cut(s) 1364
FspBI CTAG 9 cut(s) 462, 600, 680, 749, 923, 1196, 1572, 1607, 1834
GlaI GCGC 4 cut(s) 684, 921, 992, 1477
GsuI CTGGAG 2 cut(s) 1704, 1773
HaeII RGCGCY 2 cut(s) 923, 1479
HaeIII GGCC 2 cut(s) 152, 977
HapII CCGG 5 cut(s) 37, 76, 85, 93, 1552
HgaI GACGC 1 cut(s) 816
HhaI GCGC 4 cut(s) 685, 922, 993, 1478
Hin1I GRCGYC 1 cut(s) 827
Hin1II CATG 7 cut(s) 196, 394, 398, 442, 557, 580, 1748
Hin6I GCGC 4 cut(s) 683, 920, 991, 1476
HinP1I GCGC 4 cut(s) 683, 920, 991, 1476
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HpaII CCGG 5 cut(s) 37, 76, 85, 93, 1552
HphI GGTGA 6 cut(s) 65, 388, 808, 1055, 1331, 1648
Hpy166II GTNNAC 4 cut(s) 228, 360, 1261, 1322
Hpy188III TCNNGA 7 cut(s) 517, 902, 1183, 1546, 1706, 1721, 1752
Hpy8I GTNNAC 4 cut(s) 228, 360, 1261, 1322
Hpy99I CGWCG 1 cut(s) 998
HpyCH4IV ACGT 3 cut(s) 285, 996, 1798
HpyCH4V TGCA 9 cut(s) 166, 196, 214, 394, 965, 1127, 1523, 1742, 1804
HpySE526I ACGT 3 cut(s) 285, 996, 1798
Hsp92I GRCGYC 1 cut(s) 827
Hsp92II CATG 7 cut(s) 196, 394, 398, 442, 557, 580, 1748
HspAI GCGC 4 cut(s) 683, 920, 991, 1476
Ksp22I TGATCA 2 cut(s) 70, 1423
KspI CCGCGG 1 cut(s) 1482
Kzo9I GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
LguI GCTCTTC 3 cut(s) 534, 681, 1335
LmnI GCTCC 6 cut(s) 124, 472, 688, 750, 952, 1247
LweI GCATC 6 cut(s) 172, 634, 762, 826, 952, 1784
MaeI CTAG 9 cut(s) 462, 600, 680, 749, 923, 1196, 1572, 1607, 1834
MaeII ACGT 3 cut(s) 285, 996, 1798
MaeIII GTNAC 3 cut(s) 337, 1369, 1534
MalI GATC 7 cut(s) 72, 354, 741, 893, 900, 1425, 1581
MbiI CCGCTC 1 cut(s) 248
MboI GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
MfeI CAATTG 2 cut(s) 24, 1805
MflI RGATCY 1 cut(s) 891
MlsI TGGCCA 2 cut(s) 152, 977
MluNI TGGCCA 2 cut(s) 152, 977
MlyI GAGTC 2 cut(s) 361, 1403
MmeI TCCRAC 3 cut(s) 714, 762, 1494
Mox20I TGGCCA 2 cut(s) 152, 977
Mph1103I ATGCAT 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 543
MscI TGGCCA 2 cut(s) 152, 977
MseI TTAA 8 cut(s) 549, 566, 789, 944, 1238, 1404, 1731, 1821
MslI CAYNNNNRTG 2 cut(s) 581, 770
Msp20I TGGCCA 2 cut(s) 152, 977
MspA1I CMGCKG 3 cut(s) 169, 859, 1481
MspI CCGG 5 cut(s) 37, 76, 85, 93, 1552
MspR9I CCNGG 4 cut(s) 38, 85, 86, 1553
MunI CAATTG 2 cut(s) 24, 1805
MvnI CGCG 4 cut(s) 455, 993, 1184, 1481
NciI CCSGG 4 cut(s) 38, 85, 86, 1553
NcoI CCATGG 1 cut(s) 576
NdeII GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
NlaIII CATG 7 cut(s) 196, 394, 398, 442, 557, 580, 1748
NlaIV GGNNCC 1 cut(s) 1550
NruI TCGCGA 1 cut(s) 1184
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 3 cut(s) 196, 398, 557
PciI ACATGT 1 cut(s) 553
PciSI GCTCTTC 3 cut(s) 534, 681, 1335
PdmI GAANNNNTTC 1 cut(s) 543
Pfl23II CGTACG 1 cut(s) 456
PleI GAGTC 2 cut(s) 361, 1402
PpsI GAGTC 2 cut(s) 361, 1402
PscI ACATGT 1 cut(s) 553
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 1550
PspPI GGNCC 1 cut(s) 1612
PsuI RGATCY 1 cut(s) 891
PvuII CAGCTG 2 cut(s) 169, 859
RruI TCGCGA 1 cut(s) 1184
RsaI GTAC 8 cut(s) 227, 284, 312, 458, 1178, 1391, 1712, 1818
RsaNI GTAC 8 cut(s) 226, 283, 311, 457, 1177, 1390, 1711, 1817
RseI CAYNNNNRTG 2 cut(s) 581, 770
SacII CCGCGG 1 cut(s) 1482
SapI GCTCTTC 3 cut(s) 534, 681, 1335
SaqAI TTAA 8 cut(s) 549, 566, 789, 944, 1238, 1404, 1731, 1821
Sau3AI GATC 7 cut(s) 70, 352, 739, 891, 898, 1423, 1579
Sau96I GGNCC 1 cut(s) 1612
SchI GAGTC 2 cut(s) 361, 1403
ScrFI CCNGG 4 cut(s) 38, 85, 86, 1553
SfaNI GCATC 6 cut(s) 172, 634, 762, 826, 952, 1784
Sfr303I CCGCGG 1 cut(s) 1482
SgrBI CCGCGG 1 cut(s) 1482
SinI GGWCC 1 cut(s) 1612
SmaI CCCGGG 1 cut(s) 86
SmiMI CAYNNNNRTG 2 cut(s) 581, 770
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SsiI CCGC 6 cut(s) 246, 1445, 1479, 1481, 1630, 1665
SspMI CTAG 9 cut(s) 462, 600, 680, 749, 923, 1196, 1572, 1607, 1834
StyD4I CCNGG 4 cut(s) 36, 83, 84, 1551
StyI CCWWGG 3 cut(s) 333, 576, 1398
TaiI ACGT 3 cut(s) 288, 999, 1801
TaqI TCGA 2 cut(s) 264, 327
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 1481, 1667
Tru1I TTAA 8 cut(s) 549, 566, 789, 944, 1238, 1404, 1731, 1821
Tru9I TTAA 8 cut(s) 549, 566, 789, 944, 1238, 1404, 1731, 1821
TspDTI ATGAA 7 cut(s) 754, 816, 857, 901, 1094, 1740, 1761
TspGWI ACGGA 3 cut(s) 356, 377, 1286
TspMI CCCGGG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 1612
XapI RAATTY 5 cut(s) 1428, 1498, 1727, 1760, 1829
XceI RCATGY 3 cut(s) 196, 398, 557
XmaI CCCGGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 1260
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 9 cut(s) 462, 600, 680, 749, 923, 1196, 1572, 1607, 1834
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.