Rh7CG050700

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015628
Physical Location & Seq
Forward (+)
3695585 .. 3697852
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG050700.1

Sequence Viewer

Length: 1797 bp
ATGGGTGAGGTTGATACCAAACCAATTGAATCAGTCCAGGCTGCTTTGTCCTTGTTTGAAGATAAAGCTGATCACCGGAAATCCCGCCCTACCGGCACCGATATGGAGAGTGAGAAAGAGAGAGAAATTGAAGGTATACTAAAGGATTTGGCCAATTACAAGGTGCAATTGGAAGCAAAGGATGCTGCCTATATGCAAGCTCTCCTTAAGCTGCAACACAATCAGTACACAGCAGATGAGCTTTCCACTCTGCTTCAAAGCATTGAGATTGAGAGAGATGAATACATACGAGACTGTAAAGAGGCTAGGACTCGCGTGGATGAACTCGAGTCCAAGGTGAAGGAGATGGCTGATCAGCTTTCGGAAACTGCCAAGCTACGCGAGCAGCTTATGCACGTTTTTAGCGAGTTGAAGGCCACACAAGCAGAGCTGTTTAGCATCGAAACTGACCTCGTGCGTGCCAGAGATTCAGAGCTCAAGGCCCTAACACAAGCAGAACTGATGGAGAGTGCTTTCGTCATGGAGCAAGAAAGGACAGAAGAGCTTGTGAGACAGGTTGCAGATCTCAATGACGCGATATTCATGTCAAAAGATGCTGCCATTGAGGCCGAGAATGACAAGTTAGCAATGTTATCTGAGAAAGATGCCGAGATTGAGCTAGCTACACAAGCTGCTCTTAAAGCACAGGAGCAGCTAGAAGACGCAAGAATACAAACACTAGCAGTTCAGGAGTTGGAGAATCAGCTCCTTTCCAAGTCTGAGTACATTGAAGTGCTTAAATATGAGATCAAAGATGTAAATGAACAACTTGTTTTGTCCAAGAAGGCTGCTTCTGATGCTATTGATAATCTGAAGCTAGTACAAGAAGAGTTGGAAGGGATGGAAAGAAAGAACTTCGATCAGGAAGGTTTGATTGAGTCACTTGAAATGGAATTGAATCAGTTAAAACAAGAGATAATAAATGCTAATGAAGTGGCTAATCGCTTGAAGGTTGATGTTGAAATTCTAACCAGAGAGTTACAGGAGGCAAGAAGTGAGATTGATGAAATCAAGCAGGGGGAAAACAATGCACTAGTTGAGATAGCAATGCTGGAATCTGAGCTGCATAGAGGAAGGTCAAAAATTGCAGCAGCTGAAGCAAGAAAGGAGAACATGAAATCTGGGATGTATCTTGCAATTCAGCAACTAGCAATAGAAGCCGAAACTGCCAAGATGGAAAACAGAATGTTAAAACAAGGAGCAGATGGGGTAGAGGAAGAAGCTGATGAACAATATCAGGATGCTGAAGCTTCCGAAATTGAAGAACTCAATGTTGAAGAAGATCATGAAGAGAGAAAAGAACAGGATAATGGACAACTTATAACAATTTCGTTGAAGGAATATGAGTGCTTGATTGAGAAGGCAGAGAAGGCTGATCAAATTCCTGTGTCATTGGAGAAGGAACTTAGTTTTTGTCGACAGTTAAGCTTAAGCGCCACAGAAGATAAGTCTGAGTTGGAAAGGTTAGGGAAGGAGCTAGAGGCTGCTTTGGAAAAAGTAGTTCAATTCAGGAACCGAGCAGAACAGGCAGTTACGAGGGCTGATCTTGCTGAGACAGCTAAAGCAGGACTTGAGGATCAGATAAGGCGATGGAGAGAGCACAGGCAAAAGAGAAAGGCTGCTCTTATTGCACTTAGGGAGGTAGCTGCTCCAAAAGAATATGGATACCATGCTCCTCAAGAATTTAGCCTTCCTGAATACAATGAAATACAAAAGGAAAATCCCCCACTAGGTCAGGTACTTAACTTGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

598

Amino Acids

68.32

Weight (kDa)

4.62

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 3 - 432 4.2e-22 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14430
malus_domestica MD06G1198500.v1.1 MD14G1206000.v1.1
prunus_persica Prupe.5G199300_v2.0.a1 Prupe.5G199300_v2.0.a1
pyrus_communis pycom14g17040
rosa_chinensis RchiOBHm_Chr7g0182231
rosa_laevigata RLG00000005138
rosa_multiflora Rmu_sc0000003.1_g000012
rosa_roxburghii Rroxscaffold_3G00271400
rosa_rugosa Rorug06G0446300
rosa_samantha Rh7AG049300 Rh7BG049400 Rh7CG050700 Rh7DG048600
rosa_wichuraiana Rw7G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1361
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 2 cut(s) 136, 1456
AccII CGCG 3 cut(s) 315, 381, 575
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 1623
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 4 cut(s) 1002, 1419, 1721, 1790
AcuI CTGAAG 3 cut(s) 872, 1155, 1305
AfaI GTAC 4 cut(s) 227, 764, 861, 1779
AfiI CCNNNNNNNGG 1 cut(s) 1769
AflII CTTAAG 2 cut(s) 206, 1468
AhlI ACTAGT 1 cut(s) 1072
AjnI CCWGG 1 cut(s) 36
Alw21I GWGCWC 2 cut(s) 477, 1641
Alw26I GTCTC 3 cut(s) 285, 544, 1586
AlwI GGATC 1 cut(s) 1623
AlwNI CAGNNNCTG 1 cut(s) 1133
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 4 cut(s) 150, 414, 480, 606
ApoI RAATTY 4 cut(s) 1002, 1419, 1721, 1790
AspLEI GCGC 1 cut(s) 1475
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 3 cut(s) 17, 65, 349
AsuNHI GCTAGC 1 cut(s) 658
AvaI CYCGRG 1 cut(s) 326
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 477
BauI CACGAG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 2 cut(s) 477, 1641
BccI CCATC 6 cut(s) 340, 496, 874, 1207, 1238, 1623
BciT130I CCWGG 1 cut(s) 38
BciVI GTATCC 1 cut(s) 1697
BclI TGATCA 3 cut(s) 70, 352, 1414
BcoDI GTCTC 3 cut(s) 285, 544, 1586
BcuI ACTAGT 1 cut(s) 1072
BfoI RGCGCY 1 cut(s) 1476
BfrI CTTAAG 2 cut(s) 206, 1468
BfuI GTATCC 1 cut(s) 1697
BglI GCCNNNNNGGC 2 cut(s) 93, 605
BglII AGATCT 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 2 cut(s) 97, 1553
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 6 cut(s) 172, 447, 583, 634, 826, 1270
BmtI GCTAGC 1 cut(s) 662
BpiI GAAGAC 1 cut(s) 705
BpuEI CTTGAG 3 cut(s) 461, 1631, 1701
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 1769
Bse118I RCCGGY 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 633, 1092
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 5 cut(s) 187, 325, 885, 1170, 1285
BseLI CCNNNNNNNGG 1 cut(s) 1769
BseMI GCAATG 2 cut(s) 633, 1092
BseMII CTCAG 5 cut(s) 627, 750, 1089, 1482, 1581
BseRI GAGGAG 1 cut(s) 1704
Bsh1236I CGCG 3 cut(s) 315, 381, 575
BshFI GGCC 4 cut(s) 152, 416, 482, 608
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 477, 1641
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 2 cut(s) 76, 93
BslI CCNNNNNNNGG 1 cut(s) 1769
BsmAI GTCTC 3 cut(s) 285, 544, 1586
BsnI GGCC 4 cut(s) 152, 416, 482, 608
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 477, 1641
Bsp143I GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
BspACI CCGC 1 cut(s) 85
BspANI GGCC 4 cut(s) 152, 416, 482, 608
BspCNI CTCAG 5 cut(s) 628, 751, 1090, 1483, 1582
BspFNI CGCG 3 cut(s) 315, 381, 575
BspHI TCATGA 1 cut(s) 1324
BspLI GGNNCC 2 cut(s) 97, 1553
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 1 cut(s) 1623
BspQI GCTCTTC 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 95
BspTI CTTAAG 2 cut(s) 206, 1468
BsrDI GCAATG 2 cut(s) 633, 1092
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
BssNAI GTATAC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 333
Bst1107I GTATAC 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 296, 1461
Bst6I CTCTTC 3 cut(s) 534, 861, 1323
BstAFI CTTAAG 2 cut(s) 206, 1468
BstAPI GCANNNNNTGC 2 cut(s) 182, 391
BstC8I GCNNGC 4 cut(s) 198, 383, 459, 660
BstDEI CTNAG 7 cut(s) 636, 759, 1098, 1445, 1491, 1590, 1673
BstF5I GGATG 5 cut(s) 187, 325, 885, 1170, 1285
BstFNI CGCG 3 cut(s) 315, 381, 575
BstH2I RGCGCY 1 cut(s) 1476
BstHHI GCGC 1 cut(s) 1475
BstKTI GATC 9 cut(s) 73, 355, 565, 789, 901, 1324, 1417, 1585, 1618
BstMAI GTCTC 3 cut(s) 285, 544, 1586
BstMBI GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstUI CGCG 3 cut(s) 315, 381, 575
BstV2I GAAGAC 1 cut(s) 705
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 137
BsuI GTATCC 1 cut(s) 1697
BsuRI GGCC 4 cut(s) 152, 416, 482, 608
BtgZI GCGATG 1 cut(s) 1642
BtsCI GGATG 5 cut(s) 187, 325, 885, 1170, 1285
Cac8I GCNNGC 4 cut(s) 198, 383, 459, 660
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 1 cut(s) 1324
CfoI GCGC 1 cut(s) 1475
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 2 cut(s) 581, 710
Csp6I GTAC 4 cut(s) 226, 763, 860, 1778
CviAII CATG 5 cut(s) 520, 583, 1153, 1325, 1709
CviQI GTAC 4 cut(s) 226, 763, 860, 1778
DdeI CTNAG 7 cut(s) 636, 759, 1098, 1445, 1491, 1590, 1673
DpnI GATC 9 cut(s) 72, 354, 564, 788, 900, 1323, 1416, 1584, 1617
DpnII GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 3 cut(s) 534, 861, 1323
EarI CTCTTC 3 cut(s) 534, 861, 1323
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 477
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 3 cut(s) 872, 1155, 1305
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 5 cut(s) 523, 586, 1156, 1328, 1712
FalI AAGNNNNNCTT 6 cut(s) 189, 221, 660, 692, 1593, 1625
FatI CATG 5 cut(s) 519, 582, 1152, 1324, 1708
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 3 cut(s) 70, 352, 1414
FblI GTMKAC 2 cut(s) 136, 1456
FokI GGATG 5 cut(s) 194, 332, 892, 1177, 1292
FriOI GRGCYC 1 cut(s) 477
GlaI GCGC 1 cut(s) 1474
HaeII RGCGCY 1 cut(s) 1476
HaeIII GGCC 4 cut(s) 152, 416, 482, 608
HapII CCGG 2 cut(s) 76, 93
HgaI GACGC 2 cut(s) 581, 710
HhaI GCGC 1 cut(s) 1475
Hin1II CATG 5 cut(s) 523, 586, 1156, 1328, 1712
Hin6I GCGC 1 cut(s) 1473
HinP1I GCGC 1 cut(s) 1473
HincII GTYRAC 1 cut(s) 1457
HindII GTYRAC 1 cut(s) 1457
HindIII AAGCTT 2 cut(s) 1287, 1465
HinfI GANTC 8 cut(s) 29, 310, 329, 467, 739, 917, 937, 1094
HpaII CCGG 2 cut(s) 76, 93
HphI GGTGA 3 cut(s) 17, 65, 349
Hpy166II GTNNAC 3 cut(s) 137, 228, 1457
Hpy188III TCNNGA 7 cut(s) 728, 902, 1277, 1325, 1549, 1718, 1733
Hpy8I GTNNAC 3 cut(s) 137, 228, 1457
HpyCH4III ACNGT 2 cut(s) 296, 1461
HpyCH4IV ACGT 1 cut(s) 396
HpyF3I CTNAG 7 cut(s) 636, 759, 1098, 1445, 1491, 1590, 1673
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 5 cut(s) 523, 586, 1156, 1328, 1712
HspAI GCGC 1 cut(s) 1473
Ksp22I TGATCA 3 cut(s) 70, 352, 1414
Kzo9I GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 7 cut(s) 523, 688, 750, 1238, 1513, 1693, 1717
LweI GCATC 6 cut(s) 172, 447, 583, 634, 826, 1270
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 3 cut(s) 918, 1017, 1570
MalI GATC 9 cut(s) 72, 354, 564, 788, 900, 1323, 1416, 1584, 1617
MboI GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
MfeI CAATTG 2 cut(s) 24, 167
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 2 cut(s) 477, 1641
MlsI TGGCCA 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 3 cut(s) 304, 338, 926
MmeI TCCRAC 3 cut(s) 714, 852, 1476
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 8 cut(s) 207, 678, 777, 944, 1229, 1463, 1469, 1782
MslI CAYNNNNRTG 2 cut(s) 101, 770
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 1133
MspCI CTTAAG 2 cut(s) 206, 1468
MspI CCGG 2 cut(s) 76, 93
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 2 cut(s) 24, 167
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 3 cut(s) 315, 381, 575
NdeII GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 5 cut(s) 523, 586, 1156, 1328, 1712
NlaIV GGNNCC 2 cut(s) 97, 1553
NmeAIII GCCGAG 2 cut(s) 634, 673
NmuCI GTSAC 1 cut(s) 918
PaeR7I CTCGAG 1 cut(s) 326
PagI TCATGA 1 cut(s) 1324
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PfeI GAWTC 5 cut(s) 29, 467, 739, 937, 1094
PleI GAGTC 3 cut(s) 304, 337, 925
PpsI GAGTC 3 cut(s) 304, 337, 925
PsiI TTATAA 1 cut(s) 1361
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 97, 1553
PspPI GGNCC 1 cut(s) 481
PspXI VCTCGAGB 1 cut(s) 326
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 1133
RsaI GTAC 4 cut(s) 227, 764, 861, 1779
RsaNI GTAC 4 cut(s) 226, 763, 860, 1778
RseI CAYNNNNRTG 2 cut(s) 101, 770
SacI GAGCTC 1 cut(s) 477
SalI GTCGAC 1 cut(s) 1455
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 8 cut(s) 207, 678, 777, 944, 1229, 1463, 1469, 1782
Sau3AI GATC 9 cut(s) 70, 352, 562, 786, 898, 1321, 1414, 1582, 1615
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 3 cut(s) 304, 338, 926
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 477, 1641
SfaNI GCATC 6 cut(s) 172, 447, 583, 634, 826, 1270
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 101, 770
SmlI CTYRAG 6 cut(s) 206, 326, 476, 1468, 1610, 1716
SmoI CTYRAG 6 cut(s) 206, 326, 476, 1468, 1610, 1716
SpeI ACTAGT 1 cut(s) 1072
SsiI CCGC 1 cut(s) 85
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 296, 1461
TaiI ACGT 1 cut(s) 399
TaqI TCGA 4 cut(s) 327, 441, 897, 1456
TatI WGTACW 3 cut(s) 225, 762, 859
TfiI GAWTC 5 cut(s) 29, 467, 739, 937, 1094
Tru1I TTAA 8 cut(s) 207, 678, 777, 944, 1229, 1463, 1469, 1782
Tru9I TTAA 8 cut(s) 207, 678, 777, 944, 1229, 1463, 1469, 1782
TseFI GTSAC 1 cut(s) 918
Tsp45I GTSAC 1 cut(s) 918
Vha464I CTTAAG 2 cut(s) 206, 1468
XapI RAATTY 4 cut(s) 1002, 1419, 1721, 1790
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 2 cut(s) 136, 1456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.